Protein–RNA interactions for Protein: P34896

SHMT1, Serine hydroxymethyltransferase, cytosolic, humanhuman

Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1P34896 AP003327.1-201ENST00000529684 127 ntBASIC0.69□□□□□ -2.3
SHMT1P34896 MIR3612-201ENST00000579753 87 ntBASIC0.69□□□□□ -2.3
SHMT1P34896 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC0.69□□□□□ -2.3
SHMT1P34896 SNORA72.6-201ENST00000384520 129 ntBASIC0.68□□□□□ -2.3
SHMT1P34896 RNU6-1104P-201ENST00000384723 104 ntBASIC0.68□□□□□ -2.3
SHMT1P34896 MIR216A-201ENST00000385063 110 ntBASIC0.68□□□□□ -2.3
SHMT1P34896 AC092628.1-201ENST00000436250 252 ntBASIC0.68□□□□□ -2.3
SHMT1P34896 AC002350.1-201ENST00000490759 375 ntBASIC0.68□□□□□ -2.3
SHMT1P34896 COX6CP6-201ENST00000490840 228 ntBASIC0.68□□□□□ -2.3
SHMT1P34896 AC022523.2-201ENST00000561045 150 ntBASIC0.68□□□□□ -2.3
SHMT1P34896 MIR4711-201ENST00000578274 70 ntBASIC0.68□□□□□ -2.3
SHMT1P34896 RN7SL793P-201ENST00000583259 296 ntBASIC0.68□□□□□ -2.3
SHMT1P34896 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC0.67□□□□□ -2.3
SHMT1P34896 RNA5SP117-201ENST00000365294 118 ntBASIC0.67□□□□□ -2.3
SHMT1P34896 MIR539-201ENST00000365690 78 ntBASIC0.67□□□□□ -2.3
SHMT1P34896 RNU6-257P-201ENST00000410238 98 ntBASIC0.67□□□□□ -2.3
SHMT1P34896 RNU6-733P-201ENST00000410759 104 ntBASIC0.67□□□□□ -2.3
SHMT1P34896 Y_RNA.617-201ENST00000410920 90 ntBASIC0.67□□□□□ -2.3
SHMT1P34896 Y_RNA.703-201ENST00000516846 111 ntBASIC0.67□□□□□ -2.3
SHMT1P34896 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.66□□□□□ -2.3
SHMT1P34896 RNA5SP347-201ENST00000362445 119 ntBASIC0.66□□□□□ -2.3
SHMT1P34896 Y_RNA.213-201ENST00000364178 111 ntBASIC0.66□□□□□ -2.3
SHMT1P34896 MIR1263-201ENST00000408324 86 ntBASIC0.66□□□□□ -2.3
SHMT1P34896 AL359881.1-201ENST00000602916 267 ntBASIC0.66□□□□□ -2.3
SHMT1P34896 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC0.66□□□□□ -2.3
SHMT1P34896 MIR18A-201ENST00000362310 71 ntBASIC0.65□□□□□ -2.31
SHMT1P34896 RNU4-58P-201ENST00000363192 141 ntBASIC0.65□□□□□ -2.31
SHMT1P34896 Y_RNA.198-201ENST00000364013 98 ntBASIC0.65□□□□□ -2.31
SHMT1P34896 SNORA36.2-201ENST00000384004 127 ntBASIC0.65□□□□□ -2.31
SHMT1P34896 RNU6-746P-201ENST00000384112 109 ntBASIC0.65□□□□□ -2.31
SHMT1P34896 MIR1270-201ENST00000459320 83 ntBASIC0.65□□□□□ -2.31
SHMT1P34896 RNU6-1194P-201ENST00000516208 104 ntBASIC0.65□□□□□ -2.31
SHMT1P34896 DEFB131E-201ENST00000532329 154 ntBASIC0.65□□□□□ -2.31
SHMT1P34896 MIR3163-201ENST00000581592 73 ntBASIC0.65□□□□□ -2.31
SHMT1P34896 RNA5SP133-201ENST00000363368 119 ntBASIC0.64□□□□□ -2.31
SHMT1P34896 SNORD50.2-201ENST00000365465 70 ntBASIC0.64□□□□□ -2.31
SHMT1P34896 SNORA25.16-201ENST00000516741 121 ntBASIC0.64□□□□□ -2.31
SHMT1P34896 RNU7-6P-201ENST00000516845 62 ntBASIC0.64□□□□□ -2.31
SHMT1P34896 MIR3133-201ENST00000583157 78 ntBASIC0.64□□□□□ -2.31
SHMT1P34896 MIR6779-201ENST00000617283 64 ntBASIC0.64□□□□□ -2.31
SHMT1P34896 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.63□□□□□ -2.31
SHMT1P34896 RNU6-235P-201ENST00000362644 107 ntBASIC0.63□□□□□ -2.31
SHMT1P34896 RNY1P2-201ENST00000364820 117 ntBASIC0.63□□□□□ -2.31
SHMT1P34896 Y_RNA.528-201ENST00000384575 108 ntBASIC0.63□□□□□ -2.31
SHMT1P34896 RNY1P4-201ENST00000384595 115 ntBASIC0.63□□□□□ -2.31
SHMT1P34896 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC0.63□□□□□ -2.31
SHMT1P34896 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC0.63□□□□□ -2.31
SHMT1P34896 AC105081.1-201ENST00000617727 106 ntBASIC0.63□□□□□ -2.31
SHMT1P34896 U6.109-201ENST00000636749 87 ntBASIC0.63□□□□□ -2.31
SHMT1P34896 Y_RNA.174-201ENST00000363781 105 ntBASIC0.62□□□□□ -2.31
SHMT1P34896 Y_RNA.586-201ENST00000391146 98 ntBASIC0.62□□□□□ -2.31
SHMT1P34896 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.62□□□□□ -2.31
SHMT1P34896 RNU6-1211P-201ENST00000459179 105 ntBASIC0.62□□□□□ -2.31
SHMT1P34896 RNU6-1061P-201ENST00000516530 99 ntBASIC0.62□□□□□ -2.31
SHMT1P34896 Y_RNA.697-201ENST00000516776 113 ntBASIC0.62□□□□□ -2.31
SHMT1P34896 AC138749.4-201ENST00000563970 127 ntBASIC0.62□□□□□ -2.31
SHMT1P34896 Y_RNA.98-201ENST00000363109 102 ntBASIC0.61□□□□□ -2.31
SHMT1P34896 Y_RNA.536-201ENST00000384621 113 ntBASIC0.61□□□□□ -2.31
SHMT1P34896 MIR206-201ENST00000384872 86 ntBASIC0.61□□□□□ -2.31
SHMT1P34896 MIR92A1-201ENST00000385233 78 ntBASIC0.61□□□□□ -2.31
SHMT1P34896 MIR140-201ENST00000385282 100 ntBASIC0.61□□□□□ -2.31
SHMT1P34896 RNU7-2P-201ENST00000516096 62 ntBASIC0.61□□□□□ -2.31
SHMT1P34896 RNU6-781P-201ENST00000516377 101 ntBASIC0.61□□□□□ -2.31
SHMT1P34896 RNU6-229P-201ENST00000516614 102 ntBASIC0.61□□□□□ -2.31
SHMT1P34896 RNU6-531P-201ENST00000516694 104 ntBASIC0.61□□□□□ -2.31
SHMT1P34896 AC087741.2-201ENST00000619415 172 ntBASIC0.61□□□□□ -2.31
SHMT1P34896 Y_RNA.119-201ENST00000363301 96 ntBASIC0.6□□□□□ -2.31
SHMT1P34896 SNORD58C-201ENST00000365223 64 ntBASIC0.6□□□□□ -2.31
SHMT1P34896 RNU6-616P-201ENST00000384353 107 ntBASIC0.6□□□□□ -2.31
SHMT1P34896 RNU6-1321P-201ENST00000390905 107 ntBASIC0.6□□□□□ -2.31
SHMT1P34896 RNU7-48P-201ENST00000458875 63 ntBASIC0.6□□□□□ -2.31
SHMT1P34896 RNU6-469P-201ENST00000516253 101 ntBASIC0.6□□□□□ -2.31
SHMT1P34896 AC025166.1-201ENST00000612411 163 ntBASIC0.6□□□□□ -2.31
SHMT1P34896 AC243829.3-201ENST00000622177 108 ntBASIC0.6□□□□□ -2.31
SHMT1P34896 MIR101-2-201ENST00000362195 79 ntBASIC0.59□□□□□ -2.31
SHMT1P34896 SNORD115-19-201ENST00000363098 82 ntBASIC0.59□□□□□ -2.31
SHMT1P34896 RNU6-774P-201ENST00000363238 107 ntBASIC0.59□□□□□ -2.31
SHMT1P34896 SNORD115-18-201ENST00000363293 82 ntBASIC0.59□□□□□ -2.31
SHMT1P34896 Y_RNA.205-201ENST00000364128 113 ntBASIC0.59□□□□□ -2.31
SHMT1P34896 SNORD115-17-201ENST00000364612 82 ntBASIC0.59□□□□□ -2.31
SHMT1P34896 SNORD115-35-201ENST00000365122 82 ntBASIC0.59□□□□□ -2.31
SHMT1P34896 Y_RNA.448-201ENST00000384185 108 ntBASIC0.59□□□□□ -2.31
SHMT1P34896 RNU6-429P-201ENST00000384582 108 ntBASIC0.59□□□□□ -2.31
SHMT1P34896 RNU6-535P-201ENST00000384722 107 ntBASIC0.59□□□□□ -2.31
SHMT1P34896 MIRLET7F2-201ENST00000385277 83 ntBASIC0.59□□□□□ -2.31
SHMT1P34896 MT-TI-201ENST00000387365 69 ntBASIC0.59□□□□□ -2.31
SHMT1P34896 RNU6-135P-201ENST00000516769 101 ntBASIC0.59□□□□□ -2.31
SHMT1P34896 AC018659.1-201ENST00000551083 169 ntBASIC0.59□□□□□ -2.31
SHMT1P34896 MIR3678-201ENST00000578455 94 ntBASIC0.59□□□□□ -2.31
SHMT1P34896 uc_338.16-201ENST00000621804 95 ntBASIC0.59□□□□□ -2.31
SHMT1P34896 SNORD114-23-201ENST00000363536 72 ntBASIC0.58□□□□□ -2.32
SHMT1P34896 RNU6-704P-201ENST00000364162 103 ntBASIC0.58□□□□□ -2.32
SHMT1P34896 Y_RNA.346-201ENST00000365385 112 ntBASIC0.58□□□□□ -2.32
SHMT1P34896 RNU6-291P-201ENST00000384720 107 ntBASIC0.58□□□□□ -2.32
SHMT1P34896 RNA5SP121-201ENST00000516537 101 ntBASIC0.58□□□□□ -2.32
SHMT1P34896 MTND5P34-201ENST00000568888 325 ntBASIC0.58□□□□□ -2.32
SHMT1P34896 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.58□□□□□ -2.32
SHMT1P34896 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.58□□□□□ -2.32
SHMT1P34896 RNY4P6-201ENST00000363667 96 ntBASIC0.57□□□□□ -2.32
SHMT1P34896 RNU6-865P-201ENST00000364772 107 ntBASIC0.57□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 182.5 ms