Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC1.15□□□□□ -2.23
SMARCA1P28370 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC1.15□□□□□ -2.23
SMARCA1P28370 MIR96-201ENST00000362288 78 ntBASIC1.14□□□□□ -2.23
SMARCA1P28370 Y_RNA.205-201ENST00000364128 113 ntBASIC1.14□□□□□ -2.23
SMARCA1P28370 SNORD115-35-201ENST00000365122 82 ntBASIC1.14□□□□□ -2.23
SMARCA1P28370 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC1.14□□□□□ -2.23
SMARCA1P28370 SNORD116-21-201ENST00000384507 92 ntBASIC1.14□□□□□ -2.23
SMARCA1P28370 RNU6-429P-201ENST00000384582 108 ntBASIC1.14□□□□□ -2.23
SMARCA1P28370 MIR125B2-201ENST00000385128 89 ntBASIC1.14□□□□□ -2.23
SMARCA1P28370 MIR100-201ENST00000385259 80 ntBASIC1.14□□□□□ -2.23
SMARCA1P28370 SNORD89-201ENST00000390981 114 ntBASIC1.14□□□□□ -2.23
SMARCA1P28370 MIR1257-201ENST00000408490 117 ntBASIC1.14□□□□□ -2.23
SMARCA1P28370 FABP5P4-201ENST00000437203 171 ntBASIC1.14□□□□□ -2.23
SMARCA1P28370 RPL39P25-201ENST00000449384 154 ntBASIC1.14□□□□□ -2.23
SMARCA1P28370 AC067940.1-201ENST00000458411 300 ntBASIC1.14□□□□□ -2.23
SMARCA1P28370 RNU6-521P-201ENST00000516663 105 ntBASIC1.14□□□□□ -2.23
SMARCA1P28370 MIR4491-201ENST00000581087 68 ntBASIC1.14□□□□□ -2.23
SMARCA1P28370 MIR4804-201ENST00000581683 73 ntBASIC1.14□□□□□ -2.23
SMARCA1P28370 PVT1_3.1-201ENST00000620853 95 ntBASIC1.14□□□□□ -2.23
SMARCA1P28370 RNU6-834P-201ENST00000362367 110 ntBASIC1.13□□□□□ -2.23
SMARCA1P28370 Y_RNA.35-201ENST00000362601 101 ntBASIC1.13□□□□□ -2.23
SMARCA1P28370 SNORD114-27-201ENST00000363766 70 ntBASIC1.13□□□□□ -2.23
SMARCA1P28370 MIR520E-201ENST00000384867 87 ntBASIC1.13□□□□□ -2.23
SMARCA1P28370 RNU6-1321P-201ENST00000390905 107 ntBASIC1.13□□□□□ -2.23
SMARCA1P28370 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC1.13□□□□□ -2.23
SMARCA1P28370 AC103810.9-201ENST00000606688 112 ntBASIC1.13□□□□□ -2.23
SMARCA1P28370 hsa-mir-4536-1.1-201ENST00000636519 88 ntBASIC1.13□□□□□ -2.23
SMARCA1P28370 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC1.13□□□□□ -2.23
SMARCA1P28370 SNORA63.5-201ENST00000363548 123 ntBASIC1.12□□□□□ -2.23
SMARCA1P28370 Y_RNA.273-201ENST00000364703 102 ntBASIC1.12□□□□□ -2.23
SMARCA1P28370 RNU6-1187P-201ENST00000364771 110 ntBASIC1.12□□□□□ -2.23
SMARCA1P28370 RNU6-1335P-201ENST00000365426 107 ntBASIC1.12□□□□□ -2.23
SMARCA1P28370 RNU6-1056P-201ENST00000383996 107 ntBASIC1.12□□□□□ -2.23
SMARCA1P28370 Y_RNA.448-201ENST00000384185 108 ntBASIC1.12□□□□□ -2.23
SMARCA1P28370 MIR532-201ENST00000385025 91 ntBASIC1.12□□□□□ -2.23
SMARCA1P28370 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC1.12□□□□□ -2.23
SMARCA1P28370 U7.7-201ENST00000459276 60 ntBASIC1.12□□□□□ -2.23
SMARCA1P28370 RNU6-977P-201ENST00000516411 103 ntBASIC1.12□□□□□ -2.23
SMARCA1P28370 MIR548AI-201ENST00000579940 88 ntBASIC1.12□□□□□ -2.23
SMARCA1P28370 MIR6857-201ENST00000613267 93 ntBASIC1.12□□□□□ -2.23
SMARCA1P28370 MIR6129-201ENST00000616087 109 ntBASIC1.12□□□□□ -2.23
SMARCA1P28370 RNU6-363P-201ENST00000362895 105 ntBASIC1.11□□□□□ -2.23
SMARCA1P28370 RNU4-83P-201ENST00000410863 133 ntBASIC1.11□□□□□ -2.23
SMARCA1P28370 AL353813.1-201ENST00000440700 253 ntBASIC1.11□□□□□ -2.23
SMARCA1P28370 RNU7-56P-201ENST00000458744 62 ntBASIC1.11□□□□□ -2.23
SMARCA1P28370 RPL39P34-201ENST00000477141 156 ntBASIC1.11□□□□□ -2.23
SMARCA1P28370 RNU6-1110P-201ENST00000516462 101 ntBASIC1.11□□□□□ -2.23
SMARCA1P28370 RNU7-156P-201ENST00000517214 74 ntBASIC1.11□□□□□ -2.23
SMARCA1P28370 MIR8066-201ENST00000617280 78 ntBASIC1.11□□□□□ -2.23
SMARCA1P28370 MIR6788-201ENST00000618842 66 ntBASIC1.11□□□□□ -2.23
SMARCA1P28370 RNU4-67P-201ENST00000364569 141 ntBASIC1.1□□□□□ -2.23
SMARCA1P28370 RNU6-880P-201ENST00000384526 107 ntBASIC1.1□□□□□ -2.23
SMARCA1P28370 RNU6-816P-201ENST00000390914 107 ntBASIC1.1□□□□□ -2.23
SMARCA1P28370 RNU6-1268P-201ENST00000391214 107 ntBASIC1.1□□□□□ -2.23
SMARCA1P28370 RNU6-1239P-201ENST00000391310 107 ntBASIC1.1□□□□□ -2.23
SMARCA1P28370 MIR938-201ENST00000401216 83 ntBASIC1.1□□□□□ -2.23
SMARCA1P28370 SNORA7.5-201ENST00000410672 110 ntBASIC1.1□□□□□ -2.23
SMARCA1P28370 Y_RNA.629-201ENST00000411368 105 ntBASIC1.1□□□□□ -2.23
SMARCA1P28370 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC1.1□□□□□ -2.23
SMARCA1P28370 PDCD5P2-201ENST00000507570 312 ntBASIC1.1□□□□□ -2.23
SMARCA1P28370 RNA5SP255-201ENST00000516370 107 ntBASIC1.1□□□□□ -2.23
SMARCA1P28370 SNORA25.16-201ENST00000516741 121 ntBASIC1.1□□□□□ -2.23
SMARCA1P28370 AC138749.4-201ENST00000563970 127 ntBASIC1.1□□□□□ -2.23
SMARCA1P28370 AL162726.3-218ENST00000636401 95 ntBASIC1.1□□□□□ -2.23
SMARCA1P28370 MIR6767-201ENST00000637302 66 ntBASIC1.1□□□□□ -2.23
SMARCA1P28370 Y_RNA.85-201ENST00000363014 111 ntBASIC1.09□□□□□ -2.23
SMARCA1P28370 RNU6-403P-201ENST00000363163 104 ntBASIC1.09□□□□□ -2.23
SMARCA1P28370 Y_RNA.281-201ENST00000364774 94 ntBASIC1.09□□□□□ -2.23
SMARCA1P28370 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC1.09□□□□□ -2.23
SMARCA1P28370 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC1.09□□□□□ -2.23
SMARCA1P28370 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1.09□□□□□ -2.23
SMARCA1P28370 SNORD92-201ENST00000585078 85 ntBASIC1.09□□□□□ -2.23
SMARCA1P28370 AC008608.1-201ENST00000603910 127 ntBASIC1.09□□□□□ -2.23
SMARCA1P28370 U6.109-201ENST00000636749 87 ntBASIC1.09□□□□□ -2.23
SMARCA1P28370 Y_RNA.13-201ENST00000362403 112 ntBASIC1.08□□□□□ -2.24
SMARCA1P28370 RNA5SP133-201ENST00000363368 119 ntBASIC1.08□□□□□ -2.24
SMARCA1P28370 Y_RNA.328-201ENST00000365208 113 ntBASIC1.08□□□□□ -2.24
SMARCA1P28370 Y_RNA.374-201ENST00000365606 101 ntBASIC1.08□□□□□ -2.24
SMARCA1P28370 MIR520F-201ENST00000384824 87 ntBASIC1.08□□□□□ -2.24
SMARCA1P28370 MIR605-201ENST00000385078 83 ntBASIC1.08□□□□□ -2.24
SMARCA1P28370 RNU6-679P-201ENST00000391003 106 ntBASIC1.08□□□□□ -2.24
SMARCA1P28370 MIR548J-201ENST00000408833 112 ntBASIC1.08□□□□□ -2.24
SMARCA1P28370 RNU7-48P-201ENST00000458875 63 ntBASIC1.08□□□□□ -2.24
SMARCA1P28370 AC068339.1-201ENST00000526965 141 ntBASIC1.08□□□□□ -2.24
SMARCA1P28370 AC133485.1-201ENST00000567176 124 ntBASIC1.08□□□□□ -2.24
SMARCA1P28370 AL136317.1-201ENST00000612653 226 ntBASIC1.08□□□□□ -2.24
SMARCA1P28370 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC1.07□□□□□ -2.24
SMARCA1P28370 MIR373-201ENST00000362273 69 ntBASIC1.07□□□□□ -2.24
SMARCA1P28370 Y_RNA.42-201ENST00000362660 108 ntBASIC1.07□□□□□ -2.24
SMARCA1P28370 Y_RNA.98-201ENST00000363109 102 ntBASIC1.07□□□□□ -2.24
SMARCA1P28370 RNY1P2-201ENST00000364820 117 ntBASIC1.07□□□□□ -2.24
SMARCA1P28370 RNU6-364P-201ENST00000384387 107 ntBASIC1.07□□□□□ -2.24
SMARCA1P28370 MIR34C-201ENST00000384831 77 ntBASIC1.07□□□□□ -2.24
SMARCA1P28370 RNU6-447P-201ENST00000410293 104 ntBASIC1.07□□□□□ -2.24
SMARCA1P28370 RNU6-1118P-201ENST00000410382 104 ntBASIC1.07□□□□□ -2.24
SMARCA1P28370 RNU6-1076P-201ENST00000410397 104 ntBASIC1.07□□□□□ -2.24
SMARCA1P28370 RNU6-355P-201ENST00000410427 104 ntBASIC1.07□□□□□ -2.24
SMARCA1P28370 RNU6-791P-201ENST00000410467 104 ntBASIC1.07□□□□□ -2.24
SMARCA1P28370 RNU6-705P-201ENST00000410601 104 ntBASIC1.07□□□□□ -2.24
SMARCA1P28370 RNU6-1100P-201ENST00000410691 104 ntBASIC1.07□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 174.9 ms