Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 RNU7-137P-201ENST00000516788 62 ntBASIC0.61□□□□□ -2.31
HOXC4P09017 IGHVII-40-1-201ENST00000517316 58 ntBASIC0.61□□□□□ -2.31
HOXC4P09017 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC0.61□□□□□ -2.31
HOXC4P09017 AL035470.1-201ENST00000622571 220 ntBASIC0.61□□□□□ -2.31
HOXC4P09017 AC023934.1-201ENST00000574529 2389 ntBASIC0.61□□□□□ -2.31
HOXC4P09017 Y_RNA.213-201ENST00000364178 111 ntBASIC0.6□□□□□ -2.31
HOXC4P09017 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC0.6□□□□□ -2.31
HOXC4P09017 RNU6-429P-201ENST00000384582 108 ntBASIC0.6□□□□□ -2.31
HOXC4P09017 MIR598-201ENST00000384868 97 ntBASIC0.6□□□□□ -2.31
HOXC4P09017 MIR206-201ENST00000384872 86 ntBASIC0.6□□□□□ -2.31
HOXC4P09017 MIR605-201ENST00000385078 83 ntBASIC0.6□□□□□ -2.31
HOXC4P09017 SNORD89-201ENST00000390981 114 ntBASIC0.6□□□□□ -2.31
HOXC4P09017 RNU6-994P-201ENST00000410507 111 ntBASIC0.6□□□□□ -2.31
HOXC4P09017 MIR18B-201ENST00000454574 71 ntBASIC0.6□□□□□ -2.31
HOXC4P09017 RNU6-313P-201ENST00000516317 112 ntBASIC0.6□□□□□ -2.31
HOXC4P09017 MTND5P34-201ENST00000568888 325 ntBASIC0.6□□□□□ -2.31
HOXC4P09017 MIR3163-201ENST00000581592 73 ntBASIC0.6□□□□□ -2.31
HOXC4P09017 MIR4676-201ENST00000583078 72 ntBASIC0.6□□□□□ -2.31
HOXC4P09017 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC0.6□□□□□ -2.31
HOXC4P09017 RNU6-1290P-201ENST00000362957 109 ntBASIC0.59□□□□□ -2.31
HOXC4P09017 SNORD115-19-201ENST00000363098 82 ntBASIC0.59□□□□□ -2.31
HOXC4P09017 SNORD115-18-201ENST00000363293 82 ntBASIC0.59□□□□□ -2.31
HOXC4P09017 SNORD115-17-201ENST00000364612 82 ntBASIC0.59□□□□□ -2.31
HOXC4P09017 Y_RNA.299-201ENST00000364973 94 ntBASIC0.59□□□□□ -2.31
HOXC4P09017 MIR548D2-201ENST00000384955 97 ntBASIC0.59□□□□□ -2.31
HOXC4P09017 MIR548A3-201ENST00000385297 97 ntBASIC0.59□□□□□ -2.31
HOXC4P09017 MT-TF-201ENST00000387314 71 ntBASIC0.59□□□□□ -2.31
HOXC4P09017 RNU6-1321P-201ENST00000390905 107 ntBASIC0.59□□□□□ -2.31
HOXC4P09017 Y_RNA.588-201ENST00000391254 102 ntBASIC0.59□□□□□ -2.31
HOXC4P09017 SNORD93-201ENST00000408813 74 ntBASIC0.59□□□□□ -2.31
HOXC4P09017 AC092628.1-201ENST00000436250 252 ntBASIC0.59□□□□□ -2.31
HOXC4P09017 AL353813.1-201ENST00000440700 253 ntBASIC0.59□□□□□ -2.31
HOXC4P09017 AC007012.1-201ENST00000567192 175 ntBASIC0.59□□□□□ -2.31
HOXC4P09017 MIR4491-201ENST00000581087 68 ntBASIC0.59□□□□□ -2.31
HOXC4P09017 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC0.59□□□□□ -2.31
HOXC4P09017 AC008608.1-201ENST00000603910 127 ntBASIC0.59□□□□□ -2.31
HOXC4P09017 MIR6129-201ENST00000616087 109 ntBASIC0.59□□□□□ -2.31
HOXC4P09017 hsa-mir-4536-1.1-201ENST00000636519 88 ntBASIC0.59□□□□□ -2.31
HOXC4P09017 Y_RNA.35-201ENST00000362601 101 ntBASIC0.58□□□□□ -2.32
HOXC4P09017 Y_RNA.362-201ENST00000365518 110 ntBASIC0.58□□□□□ -2.32
HOXC4P09017 RNU6-110P-201ENST00000384508 104 ntBASIC0.58□□□□□ -2.32
HOXC4P09017 MIR125B2-201ENST00000385128 89 ntBASIC0.58□□□□□ -2.32
HOXC4P09017 MIR548I2-201ENST00000408348 149 ntBASIC0.58□□□□□ -2.32
HOXC4P09017 MIR1827-201ENST00000408549 66 ntBASIC0.58□□□□□ -2.32
HOXC4P09017 RNA5SP436-201ENST00000516020 115 ntBASIC0.58□□□□□ -2.32
HOXC4P09017 RNU6-521P-201ENST00000516663 105 ntBASIC0.58□□□□□ -2.32
HOXC4P09017 SNORA25.16-201ENST00000516741 121 ntBASIC0.58□□□□□ -2.32
HOXC4P09017 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC0.58□□□□□ -2.32
HOXC4P09017 MIR4804-201ENST00000581683 73 ntBASIC0.58□□□□□ -2.32
HOXC4P09017 AL670379.3-201ENST00000605040 251 ntBASIC0.58□□□□□ -2.32
HOXC4P09017 PVT1_3.1-201ENST00000620853 95 ntBASIC0.58□□□□□ -2.32
HOXC4P09017 U6.95-201ENST00000636931 70 ntBASIC0.58□□□□□ -2.32
HOXC4P09017 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC0.58□□□□□ -2.32
HOXC4P09017 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.57□□□□□ -2.32
HOXC4P09017 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.57□□□□□ -2.32
HOXC4P09017 MIR1-1-201ENST00000362147 71 ntBASIC0.57□□□□□ -2.32
HOXC4P09017 RNA5SP347-201ENST00000362445 119 ntBASIC0.57□□□□□ -2.32
HOXC4P09017 RNU6-403P-201ENST00000363163 104 ntBASIC0.57□□□□□ -2.32
HOXC4P09017 SNORA63.5-201ENST00000363548 123 ntBASIC0.57□□□□□ -2.32
HOXC4P09017 RNY4P6-201ENST00000363667 96 ntBASIC0.57□□□□□ -2.32
HOXC4P09017 Y_RNA.291-201ENST00000364886 113 ntBASIC0.57□□□□□ -2.32
HOXC4P09017 SNORD115-35-201ENST00000365122 82 ntBASIC0.57□□□□□ -2.32
HOXC4P09017 Y_RNA.448-201ENST00000384185 108 ntBASIC0.57□□□□□ -2.32
HOXC4P09017 RNU6-476P-201ENST00000384726 107 ntBASIC0.57□□□□□ -2.32
HOXC4P09017 MIR759-201ENST00000390224 91 ntBASIC0.57□□□□□ -2.32
HOXC4P09017 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC0.57□□□□□ -2.32
HOXC4P09017 SNORD77B-201ENST00000391112 67 ntBASIC0.57□□□□□ -2.32
HOXC4P09017 MIR1257-201ENST00000408490 117 ntBASIC0.57□□□□□ -2.32
HOXC4P09017 RNU6ATAC33P-201ENST00000408647 126 ntBASIC0.57□□□□□ -2.32
HOXC4P09017 SNORA7.5-201ENST00000410672 110 ntBASIC0.57□□□□□ -2.32
HOXC4P09017 RNU4-83P-201ENST00000410863 133 ntBASIC0.57□□□□□ -2.32
HOXC4P09017 RNU7-56P-201ENST00000458744 62 ntBASIC0.57□□□□□ -2.32
HOXC4P09017 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC0.57□□□□□ -2.32
HOXC4P09017 RNU7-2P-201ENST00000516096 62 ntBASIC0.57□□□□□ -2.32
HOXC4P09017 RNU6-977P-201ENST00000516411 103 ntBASIC0.57□□□□□ -2.32
HOXC4P09017 AC138749.4-201ENST00000563970 127 ntBASIC0.57□□□□□ -2.32
HOXC4P09017 MIR8066-201ENST00000617280 78 ntBASIC0.57□□□□□ -2.32
HOXC4P09017 Y_RNA.13-201ENST00000362403 112 ntBASIC0.56□□□□□ -2.32
HOXC4P09017 RNA5SP133-201ENST00000363368 119 ntBASIC0.56□□□□□ -2.32
HOXC4P09017 SNORD114-10-201ENST00000363409 72 ntBASIC0.56□□□□□ -2.32
HOXC4P09017 RNU6-1144P-201ENST00000384247 104 ntBASIC0.56□□□□□ -2.32
HOXC4P09017 SNORD116-21-201ENST00000384507 92 ntBASIC0.56□□□□□ -2.32
HOXC4P09017 MIR520F-201ENST00000384824 87 ntBASIC0.56□□□□□ -2.32
HOXC4P09017 RNU6-679P-201ENST00000391003 106 ntBASIC0.56□□□□□ -2.32
HOXC4P09017 RNU6-1064P-201ENST00000410626 104 ntBASIC0.56□□□□□ -2.32
HOXC4P09017 RPL39P25-201ENST00000449384 154 ntBASIC0.56□□□□□ -2.32
HOXC4P09017 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC0.56□□□□□ -2.32
HOXC4P09017 RNU7-102P-201ENST00000458948 62 ntBASIC0.56□□□□□ -2.32
HOXC4P09017 RNU6-531P-201ENST00000516694 104 ntBASIC0.56□□□□□ -2.32
HOXC4P09017 RNU7-156P-201ENST00000517214 74 ntBASIC0.56□□□□□ -2.32
HOXC4P09017 AL353765.1-201ENST00000605514 183 ntBASIC0.56□□□□□ -2.32
HOXC4P09017 MIR376B-201ENST00000614515 100 ntBASIC0.56□□□□□ -2.32
HOXC4P09017 U6.109-201ENST00000636749 87 ntBASIC0.56□□□□□ -2.32
HOXC4P09017 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.56□□□□□ -2.32
HOXC4P09017 RNU4-67P-201ENST00000364569 141 ntBASIC0.55□□□□□ -2.32
HOXC4P09017 SNORA72.6-201ENST00000384520 129 ntBASIC0.55□□□□□ -2.32
HOXC4P09017 Y_RNA.540-201ENST00000384638 111 ntBASIC0.55□□□□□ -2.32
HOXC4P09017 MIR34C-201ENST00000384831 77 ntBASIC0.55□□□□□ -2.32
HOXC4P09017 RNU6-816P-201ENST00000390914 107 ntBASIC0.55□□□□□ -2.32
HOXC4P09017 RNU6-1268P-201ENST00000391214 107 ntBASIC0.55□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 212.8 ms