Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 Y_RNA.630-201ENST00000411370 108 ntBASIC0.64□□□□□ -2.31
HOXD4P09016 RNU7-56P-201ENST00000458744 62 ntBASIC0.64□□□□□ -2.31
HOXD4P09016 RNU7-102P-201ENST00000458948 62 ntBASIC0.64□□□□□ -2.31
HOXD4P09016 COX6CP6-201ENST00000490840 228 ntBASIC0.64□□□□□ -2.31
HOXD4P09016 RNU7-156P-201ENST00000517214 74 ntBASIC0.64□□□□□ -2.31
HOXD4P09016 AC008608.1-201ENST00000603910 127 ntBASIC0.64□□□□□ -2.31
HOXD4P09016 AL353765.1-201ENST00000605514 183 ntBASIC0.64□□□□□ -2.31
HOXD4P09016 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC0.64□□□□□ -2.31
HOXD4P09016 AC010487.4-201ENST00000637027 61 ntBASIC0.64□□□□□ -2.31
HOXD4P09016 RNU6-403P-201ENST00000363163 104 ntBASIC0.63□□□□□ -2.31
HOXD4P09016 SNORD114-23-201ENST00000363536 72 ntBASIC0.63□□□□□ -2.31
HOXD4P09016 Y_RNA.213-201ENST00000364178 111 ntBASIC0.63□□□□□ -2.31
HOXD4P09016 RNU6-80P-201ENST00000384195 107 ntBASIC0.63□□□□□ -2.31
HOXD4P09016 RNU6-364P-201ENST00000384387 107 ntBASIC0.63□□□□□ -2.31
HOXD4P09016 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.63□□□□□ -2.31
HOXD4P09016 RNU6-733P-201ENST00000410759 104 ntBASIC0.63□□□□□ -2.31
HOXD4P09016 TMSB4XP3-201ENST00000445144 114 ntBASIC0.63□□□□□ -2.31
HOXD4P09016 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC0.63□□□□□ -2.31
HOXD4P09016 MIR4491-201ENST00000581087 68 ntBASIC0.63□□□□□ -2.31
HOXD4P09016 SNORD92-201ENST00000585078 85 ntBASIC0.63□□□□□ -2.31
HOXD4P09016 AC025166.1-201ENST00000612411 163 ntBASIC0.63□□□□□ -2.31
HOXD4P09016 AC105081.1-201ENST00000617727 106 ntBASIC0.63□□□□□ -2.31
HOXD4P09016 AC087741.2-201ENST00000619415 172 ntBASIC0.63□□□□□ -2.31
HOXD4P09016 MTND5P18-201ENST00000445624 1801 ntBASIC0.62□□□□□ -2.31
HOXD4P09016 Y_RNA.42-201ENST00000362660 108 ntBASIC0.62□□□□□ -2.31
HOXD4P09016 Y_RNA.71-201ENST00000362892 104 ntBASIC0.62□□□□□ -2.31
HOXD4P09016 SNORD114-10-201ENST00000363409 72 ntBASIC0.62□□□□□ -2.31
HOXD4P09016 RNU6-616P-201ENST00000384353 107 ntBASIC0.62□□□□□ -2.31
HOXD4P09016 RNU6-110P-201ENST00000384508 104 ntBASIC0.62□□□□□ -2.31
HOXD4P09016 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC0.62□□□□□ -2.31
HOXD4P09016 SNORD77B-201ENST00000391112 67 ntBASIC0.62□□□□□ -2.31
HOXD4P09016 RNU1-119P-201ENST00000391122 165 ntBASIC0.62□□□□□ -2.31
HOXD4P09016 RNU7-6P-201ENST00000516845 62 ntBASIC0.62□□□□□ -2.31
HOXD4P09016 MIR3163-201ENST00000581592 73 ntBASIC0.62□□□□□ -2.31
HOXD4P09016 MIR8066-201ENST00000617280 78 ntBASIC0.62□□□□□ -2.31
HOXD4P09016 AL157777.2-201ENST00000258070 137 ntBASIC0.61□□□□□ -2.31
HOXD4P09016 Y_RNA.13-201ENST00000362403 112 ntBASIC0.61□□□□□ -2.31
HOXD4P09016 RNA5SP347-201ENST00000362445 119 ntBASIC0.61□□□□□ -2.31
HOXD4P09016 Y_RNA.374-201ENST00000365606 101 ntBASIC0.61□□□□□ -2.31
HOXD4P09016 SNORA72.6-201ENST00000384520 129 ntBASIC0.61□□□□□ -2.31
HOXD4P09016 MIR206-201ENST00000384872 86 ntBASIC0.61□□□□□ -2.31
HOXD4P09016 RNU6-447P-201ENST00000410293 104 ntBASIC0.61□□□□□ -2.31
HOXD4P09016 RNU6-1118P-201ENST00000410382 104 ntBASIC0.61□□□□□ -2.31
HOXD4P09016 RNU6-1076P-201ENST00000410397 104 ntBASIC0.61□□□□□ -2.31
HOXD4P09016 RNU6-355P-201ENST00000410427 104 ntBASIC0.61□□□□□ -2.31
HOXD4P09016 RNU6-791P-201ENST00000410467 104 ntBASIC0.61□□□□□ -2.31
HOXD4P09016 RNU6-705P-201ENST00000410601 104 ntBASIC0.61□□□□□ -2.31
HOXD4P09016 RNU6-1100P-201ENST00000410691 104 ntBASIC0.61□□□□□ -2.31
HOXD4P09016 RNU6-860P-201ENST00000410860 104 ntBASIC0.61□□□□□ -2.31
HOXD4P09016 RNU6-1217P-201ENST00000411276 104 ntBASIC0.61□□□□□ -2.31
HOXD4P09016 RNU6-785P-201ENST00000411324 104 ntBASIC0.61□□□□□ -2.31
HOXD4P09016 AC244098.3-201ENST00000424803 96 ntBASIC0.61□□□□□ -2.31
HOXD4P09016 RNU6-659P-201ENST00000516454 104 ntBASIC0.61□□□□□ -2.31
HOXD4P09016 SNORA25.16-201ENST00000516741 121 ntBASIC0.61□□□□□ -2.31
HOXD4P09016 Y_RNA.712-201ENST00000517011 92 ntBASIC0.61□□□□□ -2.31
HOXD4P09016 AC011195.1-201ENST00000578177 177 ntBASIC0.61□□□□□ -2.31
HOXD4P09016 U6.90-201ENST00000614007 104 ntBASIC0.61□□□□□ -2.31
HOXD4P09016 U6.70-201ENST00000620287 104 ntBASIC0.61□□□□□ -2.31
HOXD4P09016 RNA5SP133-201ENST00000363368 119 ntBASIC0.6□□□□□ -2.31
HOXD4P09016 RNA5SP457-201ENST00000363657 124 ntBASIC0.6□□□□□ -2.31
HOXD4P09016 RNU6-81P-201ENST00000365608 104 ntBASIC0.6□□□□□ -2.31
HOXD4P09016 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.6□□□□□ -2.31
HOXD4P09016 SNORD116-14-201ENST00000383894 92 ntBASIC0.6□□□□□ -2.31
HOXD4P09016 SNORD116-17-201ENST00000383929 92 ntBASIC0.6□□□□□ -2.31
HOXD4P09016 SNORD116-15-201ENST00000384445 92 ntBASIC0.6□□□□□ -2.31
HOXD4P09016 RNU6-959P-201ENST00000384671 107 ntBASIC0.6□□□□□ -2.31
HOXD4P09016 SNORD116-19-201ENST00000384729 92 ntBASIC0.6□□□□□ -2.31
HOXD4P09016 MIR573-201ENST00000384964 99 ntBASIC0.6□□□□□ -2.31
HOXD4P09016 MIR759-201ENST00000390224 91 ntBASIC0.6□□□□□ -2.31
HOXD4P09016 RNU6-1321P-201ENST00000390905 107 ntBASIC0.6□□□□□ -2.31
HOXD4P09016 RNU6-1307P-201ENST00000391012 103 ntBASIC0.6□□□□□ -2.31
HOXD4P09016 AC090897.1-201ENST00000580909 226 ntBASIC0.6□□□□□ -2.31
HOXD4P09016 MIR3910-1-201ENST00000580936 111 ntBASIC0.6□□□□□ -2.31
HOXD4P09016 Y_RNA.773-201ENST00000607168 90 ntBASIC0.6□□□□□ -2.31
HOXD4P09016 MIR6082-201ENST00000613604 109 ntBASIC0.6□□□□□ -2.31
HOXD4P09016 U6.109-201ENST00000636749 87 ntBASIC0.6□□□□□ -2.31
HOXD4P09016 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC0.6□□□□□ -2.31
HOXD4P09016 SNORD115-19-201ENST00000363098 82 ntBASIC0.59□□□□□ -2.31
HOXD4P09016 SNORD115-18-201ENST00000363293 82 ntBASIC0.59□□□□□ -2.31
HOXD4P09016 SNORD115-17-201ENST00000364612 82 ntBASIC0.59□□□□□ -2.31
HOXD4P09016 Y_RNA.346-201ENST00000365385 112 ntBASIC0.59□□□□□ -2.31
HOXD4P09016 Y_RNA.448-201ENST00000384185 108 ntBASIC0.59□□□□□ -2.31
HOXD4P09016 AC138749.4-201ENST00000563970 127 ntBASIC0.59□□□□□ -2.31
HOXD4P09016 MIR4711-201ENST00000578274 70 ntBASIC0.59□□□□□ -2.31
HOXD4P09016 MIR3914-2-201ENST00000637339 95 ntBASIC0.59□□□□□ -2.31
HOXD4P09016 MIR924-201ENST00000638017 53 ntBASIC0.59□□□□□ -2.31
HOXD4P09016 Y_RNA.127-201ENST00000363386 109 ntBASIC0.58□□□□□ -2.32
HOXD4P09016 MIR548D2-201ENST00000384955 97 ntBASIC0.58□□□□□ -2.32
HOXD4P09016 RNA5SP193-201ENST00000410353 107 ntBASIC0.58□□□□□ -2.32
HOXD4P09016 RNU7-2P-201ENST00000516096 62 ntBASIC0.58□□□□□ -2.32
HOXD4P09016 RNU6-1333P-201ENST00000516162 93 ntBASIC0.58□□□□□ -2.32
HOXD4P09016 SNORD33.1-201ENST00000516213 88 ntBASIC0.58□□□□□ -2.32
HOXD4P09016 MIR1255B1-201ENST00000636325 63 ntBASIC0.58□□□□□ -2.32
HOXD4P09016 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.57□□□□□ -2.32
HOXD4P09016 RNU6-531P-201ENST00000516694 104 ntBASIC0.57□□□□□ -2.32
HOXD4P09016 RNU6-448P-201ENST00000517052 107 ntBASIC0.57□□□□□ -2.32
HOXD4P09016 DEFB131E-201ENST00000532329 154 ntBASIC0.57□□□□□ -2.32
HOXD4P09016 MIR3612-201ENST00000579753 87 ntBASIC0.57□□□□□ -2.32
HOXD4P09016 Y_RNA.261-201ENST00000364631 102 ntBASIC0.56□□□□□ -2.32
HOXD4P09016 RNY1P2-201ENST00000364820 117 ntBASIC0.56□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 193.2 ms