Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 RPL39P25-201ENST00000449384 154 ntBASIC1.01□□□□□ -2.25
LMX1BO60663 RPS29P1-201ENST00000465274 159 ntBASIC1.01□□□□□ -2.25
LMX1BO60663 AC087343.1-201ENST00000477341 475 ntBASIC1.01□□□□□ -2.25
LMX1BO60663 RNU6-1223P-201ENST00000517124 104 ntBASIC1.01□□□□□ -2.25
LMX1BO60663 MIR4295-201ENST00000585286 85 ntBASIC1.01□□□□□ -2.25
LMX1BO60663 RNU6-766P-201ENST00000362478 107 ntBASIC1□□□□□ -2.25
LMX1BO60663 RNU6-1313P-201ENST00000362622 102 ntBASIC1□□□□□ -2.25
LMX1BO60663 Y_RNA.78-201ENST00000362970 110 ntBASIC1□□□□□ -2.25
LMX1BO60663 Y_RNA.247-201ENST00000364500 92 ntBASIC1□□□□□ -2.25
LMX1BO60663 RNU6-409P-201ENST00000384114 104 ntBASIC1□□□□□ -2.25
LMX1BO60663 RNU6-1201P-201ENST00000384227 107 ntBASIC1□□□□□ -2.25
LMX1BO60663 MIR34C-201ENST00000384831 77 ntBASIC1□□□□□ -2.25
LMX1BO60663 MIR590-201ENST00000385008 97 ntBASIC1□□□□□ -2.25
LMX1BO60663 RNU6-733P-201ENST00000410759 104 ntBASIC1□□□□□ -2.25
LMX1BO60663 AL031737.1-201ENST00000450125 223 ntBASIC1□□□□□ -2.25
LMX1BO60663 RNU6-1018P-201ENST00000516577 106 ntBASIC1□□□□□ -2.25
LMX1BO60663 AC106800.4-201ENST00000614905 153 ntBASIC1□□□□□ -2.25
LMX1BO60663 Y_RNA.155-201ENST00000363632 101 ntBASIC0.99□□□□□ -2.25
LMX1BO60663 SNORD113.3-201ENST00000364630 78 ntBASIC0.99□□□□□ -2.25
LMX1BO60663 Y_RNA.330-201ENST00000365230 109 ntBASIC0.99□□□□□ -2.25
LMX1BO60663 RNU6-756P-201ENST00000383997 107 ntBASIC0.99□□□□□ -2.25
LMX1BO60663 Y_RNA.448-201ENST00000384185 108 ntBASIC0.99□□□□□ -2.25
LMX1BO60663 SNORA80D-201ENST00000384488 135 ntBASIC0.99□□□□□ -2.25
LMX1BO60663 Y_RNA.507-201ENST00000384500 99 ntBASIC0.99□□□□□ -2.25
LMX1BO60663 MIR222-201ENST00000384992 110 ntBASIC0.99□□□□□ -2.25
LMX1BO60663 MIR1302-5-201ENST00000408164 150 ntBASIC0.99□□□□□ -2.25
LMX1BO60663 RNA5SP237-201ENST00000410414 113 ntBASIC0.99□□□□□ -2.25
LMX1BO60663 AL591704.2-201ENST00000421658 181 ntBASIC0.99□□□□□ -2.25
LMX1BO60663 RNU6-109P-201ENST00000516364 107 ntBASIC0.99□□□□□ -2.25
LMX1BO60663 RNU6-184P-201ENST00000516514 107 ntBASIC0.99□□□□□ -2.25
LMX1BO60663 MIR4694-201ENST00000578534 80 ntBASIC0.99□□□□□ -2.25
LMX1BO60663 MIR151B-201ENST00000584249 96 ntBASIC0.99□□□□□ -2.25
LMX1BO60663 5S_rRNA.15-201ENST00000611169 127 ntBASIC0.99□□□□□ -2.25
LMX1BO60663 MIR376B-201ENST00000614515 100 ntBASIC0.99□□□□□ -2.25
LMX1BO60663 MIR6788-201ENST00000618842 66 ntBASIC0.99□□□□□ -2.25
LMX1BO60663 AC012676.2-201ENST00000619258 186 ntBASIC0.99□□□□□ -2.25
LMX1BO60663 RNY3P2-201ENST00000362918 102 ntBASIC0.98□□□□□ -2.25
LMX1BO60663 RNU6-832P-201ENST00000363319 107 ntBASIC0.98□□□□□ -2.25
LMX1BO60663 Y_RNA.377-201ENST00000365644 108 ntBASIC0.98□□□□□ -2.25
LMX1BO60663 SNORA51.5-201ENST00000384126 131 ntBASIC0.98□□□□□ -2.25
LMX1BO60663 SNORA2B-201ENST00000384583 137 ntBASIC0.98□□□□□ -2.25
LMX1BO60663 MT-TF-201ENST00000387314 71 ntBASIC0.98□□□□□ -2.25
LMX1BO60663 Y_RNA.588-201ENST00000391254 102 ntBASIC0.98□□□□□ -2.25
LMX1BO60663 RNU6ATAC20P-201ENST00000408436 127 ntBASIC0.98□□□□□ -2.25
LMX1BO60663 RNA5SP89-201ENST00000410300 108 ntBASIC0.98□□□□□ -2.25
LMX1BO60663 AC002429.1-201ENST00000437672 148 ntBASIC0.98□□□□□ -2.25
LMX1BO60663 MIR18B-201ENST00000454574 71 ntBASIC0.98□□□□□ -2.25
LMX1BO60663 AC023827.1-201ENST00000569247 97 ntBASIC0.98□□□□□ -2.25
LMX1BO60663 SNORD114-26-201ENST00000363543 72 ntBASIC0.97□□□□□ -2.25
LMX1BO60663 Y_RNA.348-201ENST00000365403 103 ntBASIC0.97□□□□□ -2.25
LMX1BO60663 Y_RNA.495-201ENST00000384435 112 ntBASIC0.97□□□□□ -2.25
LMX1BO60663 SNORD83.1-201ENST00000411362 77 ntBASIC0.97□□□□□ -2.25
LMX1BO60663 AC015818.7-201ENST00000428754 109 ntBASIC0.97□□□□□ -2.25
LMX1BO60663 AC087499.7-201ENST00000441958 109 ntBASIC0.97□□□□□ -2.25
LMX1BO60663 SNORA70.22-201ENST00000517160 124 ntBASIC0.97□□□□□ -2.25
LMX1BO60663 AC138749.4-201ENST00000563970 127 ntBASIC0.97□□□□□ -2.25
LMX1BO60663 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC0.97□□□□□ -2.25
LMX1BO60663 AC020891.4-201ENST00000605745 93 ntBASIC0.97□□□□□ -2.25
LMX1BO60663 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC0.97□□□□□ -2.25
LMX1BO60663 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC0.96□□□□□ -2.26
LMX1BO60663 AC008163.1-202ENST00000636004 2889 ntBASIC0.96□□□□□ -2.26
LMX1BO60663 RNU6-1298P-201ENST00000362456 101 ntBASIC0.96□□□□□ -2.26
LMX1BO60663 SNORA25.8-201ENST00000364831 128 ntBASIC0.96□□□□□ -2.26
LMX1BO60663 RNU6-905P-201ENST00000384434 107 ntBASIC0.96□□□□□ -2.26
LMX1BO60663 MIR598-201ENST00000384868 97 ntBASIC0.96□□□□□ -2.26
LMX1BO60663 SNORD12-201ENST00000391002 90 ntBASIC0.96□□□□□ -2.26
LMX1BO60663 RNU6ATAC6P-201ENST00000408132 126 ntBASIC0.96□□□□□ -2.26
LMX1BO60663 SNORD111-201ENST00000408139 94 ntBASIC0.96□□□□□ -2.26
LMX1BO60663 MIR548J-201ENST00000408833 112 ntBASIC0.96□□□□□ -2.26
LMX1BO60663 RNU7-48P-201ENST00000458875 63 ntBASIC0.96□□□□□ -2.26
LMX1BO60663 RNU7-90P-201ENST00000459216 62 ntBASIC0.96□□□□□ -2.26
LMX1BO60663 RNU6-168P-201ENST00000516189 101 ntBASIC0.96□□□□□ -2.26
LMX1BO60663 MIR4491-201ENST00000581087 68 ntBASIC0.96□□□□□ -2.26
LMX1BO60663 MIR548Z-201ENST00000584743 97 ntBASIC0.96□□□□□ -2.26
LMX1BO60663 AL442128.1-201ENST00000615151 90 ntBASIC0.96□□□□□ -2.26
LMX1BO60663 AP001318.4-201ENST00000616637 121 ntBASIC0.96□□□□□ -2.26
LMX1BO60663 AC027335.2-201ENST00000624030 375 ntBASIC0.96□□□□□ -2.26
LMX1BO60663 AC091304.10-201ENST00000641554 121 ntBASIC0.96□□□□□ -2.26
LMX1BO60663 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC0.96□□□□□ -2.26
LMX1BO60663 RNU6-640P-201ENST00000363693 105 ntBASIC0.95□□□□□ -2.26
LMX1BO60663 RNY1P2-201ENST00000364820 117 ntBASIC0.95□□□□□ -2.26
LMX1BO60663 RNU1-36P-201ENST00000365130 165 ntBASIC0.95□□□□□ -2.26
LMX1BO60663 SNORA25-201ENST00000384384 134 ntBASIC0.95□□□□□ -2.26
LMX1BO60663 MIR618-201ENST00000385287 98 ntBASIC0.95□□□□□ -2.26
LMX1BO60663 RNU6ATAC41P-201ENST00000408600 126 ntBASIC0.95□□□□□ -2.26
LMX1BO60663 RNU6-447P-201ENST00000410293 104 ntBASIC0.95□□□□□ -2.26
LMX1BO60663 RNU6-1118P-201ENST00000410382 104 ntBASIC0.95□□□□□ -2.26
LMX1BO60663 RNU6-1076P-201ENST00000410397 104 ntBASIC0.95□□□□□ -2.26
LMX1BO60663 RNU6-355P-201ENST00000410427 104 ntBASIC0.95□□□□□ -2.26
LMX1BO60663 RNU6-791P-201ENST00000410467 104 ntBASIC0.95□□□□□ -2.26
LMX1BO60663 RNU6-705P-201ENST00000410601 104 ntBASIC0.95□□□□□ -2.26
LMX1BO60663 RNU6-1100P-201ENST00000410691 104 ntBASIC0.95□□□□□ -2.26
LMX1BO60663 RNU6-860P-201ENST00000410860 104 ntBASIC0.95□□□□□ -2.26
LMX1BO60663 RNU6-1217P-201ENST00000411276 104 ntBASIC0.95□□□□□ -2.26
LMX1BO60663 RNU6-785P-201ENST00000411324 104 ntBASIC0.95□□□□□ -2.26
LMX1BO60663 RNU7-40P-201ENST00000516397 64 ntBASIC0.95□□□□□ -2.26
LMX1BO60663 DEFB131E-201ENST00000532329 154 ntBASIC0.95□□□□□ -2.26
LMX1BO60663 AC141557.1-201ENST00000540982 400 ntBASIC0.95□□□□□ -2.26
LMX1BO60663 U6.90-201ENST00000614007 104 ntBASIC0.95□□□□□ -2.26
LMX1BO60663 AC012531.4-201ENST00000616509 177 ntBASIC0.95□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 171 ms