Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 MIR3935-201ENST00000583472 104 ntBASIC2.66□□□□□ -1.98
SENP3-EIF4A1A0A087X0R7 MIR4536-1-201ENST00000583537 88 ntBASIC2.66□□□□□ -1.98
SENP3-EIF4A1A0A087X0R7 AL357312.1-201ENST00000603879 298 ntBASIC2.66□□□□□ -1.98
SENP3-EIF4A1A0A087X0R7 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC2.66□□□□□ -1.98
SENP3-EIF4A1A0A087X0R7 MIR4251-201ENST00000635819 61 ntBASIC2.66□□□□□ -1.98
SENP3-EIF4A1A0A087X0R7 SNORA48.1-201ENST00000390879 135 ntBASIC2.65□□□□□ -1.99
SENP3-EIF4A1A0A087X0R7 RNU6-634P-201ENST00000459134 106 ntBASIC2.65□□□□□ -1.99
SENP3-EIF4A1A0A087X0R7 RNVU1-2-201ENST00000516326 135 ntBASIC2.65□□□□□ -1.99
SENP3-EIF4A1A0A087X0R7 SNORA25.15-201ENST00000516487 89 ntBASIC2.65□□□□□ -1.99
SENP3-EIF4A1A0A087X0R7 RNA5SP137-201ENST00000516833 135 ntBASIC2.65□□□□□ -1.99
SENP3-EIF4A1A0A087X0R7 MIR6132-201ENST00000622083 109 ntBASIC2.65□□□□□ -1.99
SENP3-EIF4A1A0A087X0R7 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC2.64□□□□□ -1.99
SENP3-EIF4A1A0A087X0R7 SNORD77.2-201ENST00000391045 68 ntBASIC2.64□□□□□ -1.99
SENP3-EIF4A1A0A087X0R7 SUB1P4-201ENST00000566062 339 ntBASIC2.64□□□□□ -1.99
SENP3-EIF4A1A0A087X0R7 IST1-227ENST00000626438 126 ntTSL 5 BASIC2.64□□□□□ -1.99
SENP3-EIF4A1A0A087X0R7 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
SENP3-EIF4A1A0A087X0R7 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC2.63□□□□□ -1.99
SENP3-EIF4A1A0A087X0R7 RNU6ATAC38P-201ENST00000408119 126 ntBASIC2.63□□□□□ -1.99
SENP3-EIF4A1A0A087X0R7 MIR1283-2-201ENST00000408621 87 ntBASIC2.63□□□□□ -1.99
SENP3-EIF4A1A0A087X0R7 RNU2-59P-201ENST00000410482 191 ntBASIC2.63□□□□□ -1.99
SENP3-EIF4A1A0A087X0R7 AC138749.4-201ENST00000563970 127 ntBASIC2.63□□□□□ -1.99
SENP3-EIF4A1A0A087X0R7 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC2.63□□□□□ -1.99
SENP3-EIF4A1A0A087X0R7 RNU6-112P-201ENST00000363599 104 ntBASIC2.62□□□□□ -1.99
SENP3-EIF4A1A0A087X0R7 RNU6-649P-201ENST00000384463 107 ntBASIC2.62□□□□□ -1.99
SENP3-EIF4A1A0A087X0R7 RNU6-296P-201ENST00000384608 107 ntBASIC2.62□□□□□ -1.99
SENP3-EIF4A1A0A087X0R7 MIR1265-201ENST00000408444 86 ntBASIC2.62□□□□□ -1.99
SENP3-EIF4A1A0A087X0R7 RNU7-26P-201ENST00000458980 63 ntBASIC2.62□□□□□ -1.99
SENP3-EIF4A1A0A087X0R7 RNU7-95P-201ENST00000459222 64 ntBASIC2.62□□□□□ -1.99
SENP3-EIF4A1A0A087X0R7 SNORA18.5-201ENST00000516616 101 ntBASIC2.62□□□□□ -1.99
SENP3-EIF4A1A0A087X0R7 MIR4303-201ENST00000581299 66 ntBASIC2.62□□□□□ -1.99
SENP3-EIF4A1A0A087X0R7 FO624990.1-201ENST00000636373 85 ntBASIC2.62□□□□□ -1.99
SENP3-EIF4A1A0A087X0R7 RNU5F-1-201ENST00000362507 117 ntBASIC2.61□□□□□ -1.99
SENP3-EIF4A1A0A087X0R7 RNU1-148P-201ENST00000384472 162 ntBASIC2.61□□□□□ -1.99
SENP3-EIF4A1A0A087X0R7 MIR635-201ENST00000384830 98 ntBASIC2.61□□□□□ -1.99
SENP3-EIF4A1A0A087X0R7 MIR548U-201ENST00000390728 81 ntBASIC2.61□□□□□ -1.99
SENP3-EIF4A1A0A087X0R7 HMGN2P39-201ENST00000398005 273 ntBASIC2.61□□□□□ -1.99
SENP3-EIF4A1A0A087X0R7 RNU1-123P-201ENST00000458950 160 ntBASIC2.61□□□□□ -1.99
SENP3-EIF4A1A0A087X0R7 AC023790.1-201ENST00000482174 347 ntBASIC2.61□□□□□ -1.99
SENP3-EIF4A1A0A087X0R7 RNA5SP182-201ENST00000516064 82 ntBASIC2.61□□□□□ -1.99
SENP3-EIF4A1A0A087X0R7 RNU6-687P-201ENST00000516443 89 ntBASIC2.61□□□□□ -1.99
SENP3-EIF4A1A0A087X0R7 MIR4484-201ENST00000582855 83 ntBASIC2.61□□□□□ -1.99
SENP3-EIF4A1A0A087X0R7 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
SENP3-EIF4A1A0A087X0R7 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
SENP3-EIF4A1A0A087X0R7 Y_RNA.532-201ENST00000384590 113 ntBASIC2.6□□□□□ -1.99
SENP3-EIF4A1A0A087X0R7 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC2.6□□□□□ -1.99
SENP3-EIF4A1A0A087X0R7 RNA5SP292-201ENST00000390974 118 ntBASIC2.6□□□□□ -1.99
SENP3-EIF4A1A0A087X0R7 HSPE1P24-201ENST00000450782 238 ntBASIC2.6□□□□□ -1.99
SENP3-EIF4A1A0A087X0R7 RNU6-303P-201ENST00000517091 106 ntBASIC2.6□□□□□ -1.99
SENP3-EIF4A1A0A087X0R7 U6.109-201ENST00000636749 87 ntBASIC2.6□□□□□ -1.99
SENP3-EIF4A1A0A087X0R7 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC2.59□□□□□ -1.99
SENP3-EIF4A1A0A087X0R7 RNU6-1254P-201ENST00000391266 104 ntBASIC2.59□□□□□ -1.99
SENP3-EIF4A1A0A087X0R7 RNU6-587P-201ENST00000391282 106 ntBASIC2.59□□□□□ -1.99
SENP3-EIF4A1A0A087X0R7 SUMO1P4-201ENST00000429430 302 ntBASIC2.59□□□□□ -1.99
SENP3-EIF4A1A0A087X0R7 snoU13.2-201ENST00000459201 104 ntBASIC2.59□□□□□ -1.99
SENP3-EIF4A1A0A087X0R7 AC025033.1-201ENST00000463883 194 ntBASIC2.59□□□□□ -1.99
SENP3-EIF4A1A0A087X0R7 AC104996.3-201ENST00000590718 94 ntBASIC2.59□□□□□ -1.99
SENP3-EIF4A1A0A087X0R7 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC2.59□□□□□ -2
SENP3-EIF4A1A0A087X0R7 AC008163.1-202ENST00000636004 2889 ntBASIC2.59□□□□□ -2
SENP3-EIF4A1A0A087X0R7 RNU6-208P-201ENST00000362431 107 ntBASIC2.58□□□□□ -2
SENP3-EIF4A1A0A087X0R7 MIR518A2-201ENST00000384966 87 ntBASIC2.58□□□□□ -2
SENP3-EIF4A1A0A087X0R7 RNU6-243P-201ENST00000391140 107 ntBASIC2.58□□□□□ -2
SENP3-EIF4A1A0A087X0R7 BX276092.1-201ENST00000427368 251 ntBASIC2.58□□□□□ -2
SENP3-EIF4A1A0A087X0R7 AC015818.7-201ENST00000428754 109 ntBASIC2.58□□□□□ -2
SENP3-EIF4A1A0A087X0R7 RNU6-322P-201ENST00000516010 103 ntBASIC2.58□□□□□ -2
SENP3-EIF4A1A0A087X0R7 SNORD92-201ENST00000585078 85 ntBASIC2.58□□□□□ -2
SENP3-EIF4A1A0A087X0R7 AL096861.1-201ENST00000610899 123 ntBASIC2.58□□□□□ -2
SENP3-EIF4A1A0A087X0R7 MIR8081-201ENST00000611533 95 ntBASIC2.58□□□□□ -2
SENP3-EIF4A1A0A087X0R7 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC2.58□□□□□ -2
SENP3-EIF4A1A0A087X0R7 Y_RNA.119-201ENST00000363301 96 ntBASIC2.57□□□□□ -2
SENP3-EIF4A1A0A087X0R7 Y_RNA.491-201ENST00000384417 107 ntBASIC2.57□□□□□ -2
SENP3-EIF4A1A0A087X0R7 MIR520H-201ENST00000385126 88 ntBASIC2.57□□□□□ -2
SENP3-EIF4A1A0A087X0R7 RNU6ATAC42P-201ENST00000408637 95 ntBASIC2.57□□□□□ -2
SENP3-EIF4A1A0A087X0R7 AC121758.2-201ENST00000553271 193 ntBASIC2.57□□□□□ -2
SENP3-EIF4A1A0A087X0R7 MIR3064-201ENST00000581130 66 ntBASIC2.57□□□□□ -2
SENP3-EIF4A1A0A087X0R7 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
SENP3-EIF4A1A0A087X0R7 AC131280.1-202ENST00000624067 4211 ntBASIC2.57□□□□□ -2
SENP3-EIF4A1A0A087X0R7 Z82195.2-201ENST00000612348 18351 ntBASIC2.56□□□□□ -2
SENP3-EIF4A1A0A087X0R7 RNU6-1123P-201ENST00000362347 106 ntBASIC2.56□□□□□ -2
SENP3-EIF4A1A0A087X0R7 SNORD36A-201ENST00000362874 73 ntBASIC2.56□□□□□ -2
SENP3-EIF4A1A0A087X0R7 RNA5SP48-201ENST00000363969 126 ntBASIC2.56□□□□□ -2
SENP3-EIF4A1A0A087X0R7 Y_RNA.283-201ENST00000364798 112 ntBASIC2.56□□□□□ -2
SENP3-EIF4A1A0A087X0R7 RNU6-466P-201ENST00000391224 103 ntBASIC2.56□□□□□ -2
SENP3-EIF4A1A0A087X0R7 SNORD30.1-201ENST00000391309 70 ntBASIC2.56□□□□□ -2
SENP3-EIF4A1A0A087X0R7 RNU1-40P-201ENST00000516816 164 ntBASIC2.56□□□□□ -2
SENP3-EIF4A1A0A087X0R7 RNU1-97P-201ENST00000516872 164 ntBASIC2.56□□□□□ -2
SENP3-EIF4A1A0A087X0R7 Y_RNA.386-201ENST00000383913 105 ntBASIC2.55□□□□□ -2
SENP3-EIF4A1A0A087X0R7 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC2.55□□□□□ -2
SENP3-EIF4A1A0A087X0R7 SNORA48.3-201ENST00000391081 134 ntBASIC2.55□□□□□ -2
SENP3-EIF4A1A0A087X0R7 RNA5SP501-201ENST00000410990 112 ntBASIC2.55□□□□□ -2
SENP3-EIF4A1A0A087X0R7 AC074348.1-201ENST00000426503 132 ntBASIC2.55□□□□□ -2
SENP3-EIF4A1A0A087X0R7 AC009474.2-201ENST00000451383 136 ntBASIC2.55□□□□□ -2
SENP3-EIF4A1A0A087X0R7 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC2.55□□□□□ -2
SENP3-EIF4A1A0A087X0R7 AC005908.1-201ENST00000468701 347 ntBASIC2.55□□□□□ -2
SENP3-EIF4A1A0A087X0R7 MIR588-201ENST00000384900 83 ntBASIC2.54□□□□□ -2
SENP3-EIF4A1A0A087X0R7 Y_RNA.596-201ENST00000410462 109 ntBASIC2.54□□□□□ -2
SENP3-EIF4A1A0A087X0R7 RNU7-41P-201ENST00000515917 61 ntBASIC2.54□□□□□ -2
SENP3-EIF4A1A0A087X0R7 RNU6-75P-201ENST00000515944 104 ntBASIC2.54□□□□□ -2
SENP3-EIF4A1A0A087X0R7 RNU4ATAC9P-201ENST00000517146 126 ntBASIC2.54□□□□□ -2
SENP3-EIF4A1A0A087X0R7 U1.36-201ENST00000620684 176 ntBASIC2.54□□□□□ -2
SENP3-EIF4A1A0A087X0R7 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC2.54□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 188 ms