Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 RNU6-1076P-201ENST00000410397 104 ntBASIC1.65□□□□□ -2.15
MSX2P35548 RNU6-355P-201ENST00000410427 104 ntBASIC1.65□□□□□ -2.15
MSX2P35548 RNU6-791P-201ENST00000410467 104 ntBASIC1.65□□□□□ -2.15
MSX2P35548 RNU6-705P-201ENST00000410601 104 ntBASIC1.65□□□□□ -2.15
MSX2P35548 RNU6-1100P-201ENST00000410691 104 ntBASIC1.65□□□□□ -2.15
MSX2P35548 RNU6-860P-201ENST00000410860 104 ntBASIC1.65□□□□□ -2.15
MSX2P35548 RNU6-1217P-201ENST00000411276 104 ntBASIC1.65□□□□□ -2.15
MSX2P35548 RNU6-785P-201ENST00000411324 104 ntBASIC1.65□□□□□ -2.15
MSX2P35548 RNU7-48P-201ENST00000458875 63 ntBASIC1.65□□□□□ -2.15
MSX2P35548 snoU13.2-201ENST00000459201 104 ntBASIC1.65□□□□□ -2.15
MSX2P35548 Y_RNA.676-201ENST00000516393 96 ntBASIC1.65□□□□□ -2.15
MSX2P35548 AP003716.2-201ENST00000528260 108 ntBASIC1.65□□□□□ -2.15
MSX2P35548 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC1.65□□□□□ -2.15
MSX2P35548 U6.90-201ENST00000614007 104 ntBASIC1.65□□□□□ -2.15
MSX2P35548 U6.70-201ENST00000620287 104 ntBASIC1.65□□□□□ -2.15
MSX2P35548 WWP1P1-201ENST00000466609 2769 ntBASIC1.65□□□□□ -2.15
MSX2P35548 MIR494-201ENST00000349529 81 ntBASIC1.64□□□□□ -2.15
MSX2P35548 SNORA25.3-201ENST00000363205 127 ntBASIC1.64□□□□□ -2.15
MSX2P35548 RNA5SP173-201ENST00000364857 136 ntBASIC1.64□□□□□ -2.15
MSX2P35548 U8.15-201ENST00000390947 134 ntBASIC1.64□□□□□ -2.15
MSX2P35548 RNU6-592P-201ENST00000411333 103 ntBASIC1.64□□□□□ -2.15
MSX2P35548 RPS29P28-201ENST00000446439 141 ntBASIC1.64□□□□□ -2.15
MSX2P35548 RNU6-295P-201ENST00000516901 104 ntBASIC1.64□□□□□ -2.15
MSX2P35548 MIR4285-201ENST00000581001 85 ntBASIC1.64□□□□□ -2.15
MSX2P35548 MIR4422-201ENST00000581938 83 ntBASIC1.64□□□□□ -2.15
MSX2P35548 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC1.63□□□□□ -2.15
MSX2P35548 RNA5SP237-201ENST00000410414 113 ntBASIC1.63□□□□□ -2.15
MSX2P35548 RNU6-86P-201ENST00000606534 107 ntBASIC1.63□□□□□ -2.15
MSX2P35548 TP73-AS1.1-201ENST00000611447 161 ntBASIC1.63□□□□□ -2.15
MSX2P35548 MIR6740-201ENST00000618268 113 ntBASIC1.63□□□□□ -2.15
MSX2P35548 MIR8063-201ENST00000621930 81 ntBASIC1.63□□□□□ -2.15
MSX2P35548 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC1.62□□□□□ -2.15
MSX2P35548 Y_RNA.98-201ENST00000363109 102 ntBASIC1.62□□□□□ -2.15
MSX2P35548 RNU6-1244P-201ENST00000363614 108 ntBASIC1.62□□□□□ -2.15
MSX2P35548 SNORD58A-201ENST00000383875 65 ntBASIC1.62□□□□□ -2.15
MSX2P35548 RNU6-949P-201ENST00000384040 107 ntBASIC1.62□□□□□ -2.15
MSX2P35548 MIR588-201ENST00000384900 83 ntBASIC1.62□□□□□ -2.15
MSX2P35548 MIR9-3-201ENST00000385084 90 ntBASIC1.62□□□□□ -2.15
MSX2P35548 MIR548G-201ENST00000408442 89 ntBASIC1.62□□□□□ -2.15
MSX2P35548 AC103810.7-201ENST00000607821 91 ntBASIC1.62□□□□□ -2.15
MSX2P35548 ZNF355P-201ENST00000427301 3216 ntBASIC1.61□□□□□ -2.15
MSX2P35548 Y_RNA.338-201ENST00000365320 114 ntBASIC1.61□□□□□ -2.15
MSX2P35548 RNU6-396P-201ENST00000365369 105 ntBASIC1.61□□□□□ -2.15
MSX2P35548 RNU6-675P-201ENST00000384236 104 ntBASIC1.61□□□□□ -2.15
MSX2P35548 MIR1185-1-201ENST00000408598 86 ntBASIC1.61□□□□□ -2.15
MSX2P35548 MIR4264-201ENST00000583520 66 ntBASIC1.61□□□□□ -2.15
MSX2P35548 AP001362.1-201ENST00000625165 124 ntBASIC1.61□□□□□ -2.15
MSX2P35548 SNORD33-201ENST00000362761 85 ntBASIC1.6□□□□□ -2.15
MSX2P35548 Y_RNA.173-201ENST00000363776 113 ntBASIC1.6□□□□□ -2.15
MSX2P35548 SNORD116-10-201ENST00000363791 102 ntBASIC1.6□□□□□ -2.15
MSX2P35548 RNU6-573P-201ENST00000383938 106 ntBASIC1.6□□□□□ -2.15
MSX2P35548 MT-TN-201ENST00000387400 73 ntBASIC1.6□□□□□ -2.15
MSX2P35548 RNU6ATAC42P-201ENST00000408637 95 ntBASIC1.6□□□□□ -2.15
MSX2P35548 AC027119.1-201ENST00000440877 241 ntBASIC1.6□□□□□ -2.15
MSX2P35548 AC245517.4-201ENST00000448601 281 ntBASIC1.6□□□□□ -2.15
MSX2P35548 AC079140.2-201ENST00000506193 142 ntBASIC1.6□□□□□ -2.15
MSX2P35548 RNU6-947P-201ENST00000516264 106 ntBASIC1.6□□□□□ -2.15
MSX2P35548 MIR6516-201ENST00000630554 81 ntBASIC1.6□□□□□ -2.15
MSX2P35548 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.59□□□□□ -2.15
MSX2P35548 MIR30D-201ENST00000362283 70 ntBASIC1.59□□□□□ -2.15
MSX2P35548 Y_RNA.164-201ENST00000363709 102 ntBASIC1.59□□□□□ -2.15
MSX2P35548 RNU6-219P-201ENST00000364728 107 ntBASIC1.59□□□□□ -2.15
MSX2P35548 Y_RNA.567-201ENST00000384736 106 ntBASIC1.59□□□□□ -2.15
MSX2P35548 MIR583-201ENST00000384846 75 ntBASIC1.59□□□□□ -2.15
MSX2P35548 U8.13-201ENST00000390842 128 ntBASIC1.59□□□□□ -2.15
MSX2P35548 RNU6-402P-201ENST00000410678 103 ntBASIC1.59□□□□□ -2.15
MSX2P35548 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC1.59□□□□□ -2.15
MSX2P35548 AL133373.1-201ENST00000497098 94 ntBASIC1.59□□□□□ -2.15
MSX2P35548 MIR2115-201ENST00000516657 100 ntBASIC1.59□□□□□ -2.15
MSX2P35548 RNU6-90P-201ENST00000606352 106 ntBASIC1.59□□□□□ -2.15
MSX2P35548 uc_338.6-201ENST00000613544 171 ntBASIC1.59□□□□□ -2.15
MSX2P35548 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.58□□□□□ -2.16
MSX2P35548 HSBP1P2-201ENST00000299671 229 ntBASIC1.58□□□□□ -2.16
MSX2P35548 RNU1-17P-201ENST00000363022 152 ntBASIC1.58□□□□□ -2.16
MSX2P35548 RNY1P2-201ENST00000364820 117 ntBASIC1.58□□□□□ -2.16
MSX2P35548 RNU6-205P-201ENST00000390858 107 ntBASIC1.58□□□□□ -2.16
MSX2P35548 SNORA40.18-201ENST00000391200 128 ntBASIC1.58□□□□□ -2.16
MSX2P35548 SNORA26.9-201ENST00000391322 122 ntBASIC1.58□□□□□ -2.16
MSX2P35548 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC1.58□□□□□ -2.16
MSX2P35548 SPINT5P-201ENST00000448174 155 ntBASIC1.58□□□□□ -2.16
MSX2P35548 RPL39P39-201ENST00000455840 151 ntBASIC1.58□□□□□ -2.16
MSX2P35548 AC133485.1-201ENST00000567176 124 ntBASIC1.58□□□□□ -2.16
MSX2P35548 AC020891.4-201ENST00000605745 93 ntBASIC1.58□□□□□ -2.16
MSX2P35548 AC012676.2-201ENST00000619258 186 ntBASIC1.58□□□□□ -2.16
MSX2P35548 MIR1245B-201ENST00000636115 69 ntBASIC1.58□□□□□ -2.16
MSX2P35548 RNA5SP264-201ENST00000363115 107 ntBASIC1.57□□□□□ -2.16
MSX2P35548 Y_RNA.168-201ENST00000363740 102 ntBASIC1.57□□□□□ -2.16
MSX2P35548 SNORD116-22-201ENST00000384430 92 ntBASIC1.57□□□□□ -2.16
MSX2P35548 SNORD38.2-201ENST00000384470 69 ntBASIC1.57□□□□□ -2.16
MSX2P35548 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC1.57□□□□□ -2.16
MSX2P35548 RNU6-1165P-201ENST00000410119 107 ntBASIC1.57□□□□□ -2.16
MSX2P35548 RNU6-267P-201ENST00000516714 103 ntBASIC1.57□□□□□ -2.16
MSX2P35548 RNU11-2P-201ENST00000516898 142 ntBASIC1.57□□□□□ -2.16
MSX2P35548 RNU6-165P-201ENST00000517170 99 ntBASIC1.57□□□□□ -2.16
MSX2P35548 snoMBII-202.2-201ENST00000517263 86 ntBASIC1.57□□□□□ -2.16
MSX2P35548 AC019176.1-201ENST00000518519 225 ntBASIC1.57□□□□□ -2.16
MSX2P35548 AC138749.4-201ENST00000563970 127 ntBASIC1.57□□□□□ -2.16
MSX2P35548 SNORA4-201ENST00000584302 138 ntBASIC1.57□□□□□ -2.16
MSX2P35548 AP000753.3-201ENST00000604083 169 ntBASIC1.57□□□□□ -2.16
MSX2P35548 MIR6845-201ENST00000613182 61 ntBASIC1.57□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 258.8 ms