Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 MIR4295-201ENST00000585286 85 ntBASIC1.26□□□□□ -2.21
SMARCA1P28370 MIR6779-201ENST00000617283 64 ntBASIC1.26□□□□□ -2.21
SMARCA1P28370 U6.95-201ENST00000636931 70 ntBASIC1.26□□□□□ -2.21
SMARCA1P28370 RNU6ATAC6P-201ENST00000408132 126 ntBASIC1.25□□□□□ -2.21
SMARCA1P28370 RNU2-51P-201ENST00000410708 197 ntBASIC1.25□□□□□ -2.21
SMARCA1P28370 AC015818.7-201ENST00000428754 109 ntBASIC1.25□□□□□ -2.21
SMARCA1P28370 AC087499.7-201ENST00000441958 109 ntBASIC1.25□□□□□ -2.21
SMARCA1P28370 AC087343.1-201ENST00000477341 475 ntBASIC1.25□□□□□ -2.21
SMARCA1P28370 RNU6-313P-201ENST00000516317 112 ntBASIC1.25□□□□□ -2.21
SMARCA1P28370 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC1.25□□□□□ -2.21
SMARCA1P28370 MIR3163-201ENST00000581592 73 ntBASIC1.25□□□□□ -2.21
SMARCA1P28370 RNU6-934P-201ENST00000365154 107 ntBASIC1.24□□□□□ -2.21
SMARCA1P28370 MIR759-201ENST00000390224 91 ntBASIC1.24□□□□□ -2.21
SMARCA1P28370 MIR18B-201ENST00000454574 71 ntBASIC1.24□□□□□ -2.21
SMARCA1P28370 Y_RNA.649-201ENST00000459077 103 ntBASIC1.24□□□□□ -2.21
SMARCA1P28370 AL359881.1-201ENST00000602916 267 ntBASIC1.24□□□□□ -2.21
SMARCA1P28370 AL589743.1-201ENST00000551932 2712 ntBASIC1.24□□□□□ -2.21
SMARCA1P28370 U8.15-201ENST00000390947 134 ntBASIC1.23□□□□□ -2.21
SMARCA1P28370 MIR548I2-201ENST00000408348 149 ntBASIC1.23□□□□□ -2.21
SMARCA1P28370 SNORD124-201ENST00000459577 104 ntBASIC1.23□□□□□ -2.21
SMARCA1P28370 UGP2-230ENST00000626380 276 ntTSL 5 BASIC1.23□□□□□ -2.21
SMARCA1P28370 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.22□□□□□ -2.21
SMARCA1P28370 RNU6-369P-201ENST00000362515 102 ntBASIC1.22□□□□□ -2.21
SMARCA1P28370 RNU6-949P-201ENST00000384040 107 ntBASIC1.22□□□□□ -2.21
SMARCA1P28370 RNU6-616P-201ENST00000384353 107 ntBASIC1.22□□□□□ -2.21
SMARCA1P28370 Y_RNA.540-201ENST00000384638 111 ntBASIC1.22□□□□□ -2.21
SMARCA1P28370 SNORD67.1-201ENST00000516618 108 ntBASIC1.22□□□□□ -2.21
SMARCA1P28370 Y_RNA.773-201ENST00000607168 90 ntBASIC1.22□□□□□ -2.21
SMARCA1P28370 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1.21□□□□□ -2.22
SMARCA1P28370 Y_RNA.344-201ENST00000365381 112 ntBASIC1.21□□□□□ -2.22
SMARCA1P28370 MIR200A-201ENST00000384875 90 ntBASIC1.21□□□□□ -2.22
SMARCA1P28370 MIR548D2-201ENST00000384955 97 ntBASIC1.21□□□□□ -2.22
SMARCA1P28370 MIR548A1-201ENST00000385041 97 ntBASIC1.21□□□□□ -2.22
SMARCA1P28370 MIR548A3-201ENST00000385297 97 ntBASIC1.21□□□□□ -2.22
SMARCA1P28370 MT-TF-201ENST00000387314 71 ntBASIC1.21□□□□□ -2.22
SMARCA1P28370 AC096949.1-201ENST00000412047 152 ntBASIC1.21□□□□□ -2.22
SMARCA1P28370 RPS26P5-201ENST00000418544 335 ntBASIC1.21□□□□□ -2.22
SMARCA1P28370 OR2A41P-201ENST00000473586 105 ntBASIC1.21□□□□□ -2.22
SMARCA1P28370 AC020891.4-201ENST00000605745 93 ntBASIC1.21□□□□□ -2.22
SMARCA1P28370 SNORD114-21-201ENST00000606412 72 ntBASIC1.21□□□□□ -2.22
SMARCA1P28370 5S_rRNA.15-201ENST00000611169 127 ntBASIC1.21□□□□□ -2.22
SMARCA1P28370 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.21□□□□□ -2.22
SMARCA1P28370 RNY4P6-201ENST00000363667 96 ntBASIC1.2□□□□□ -2.22
SMARCA1P28370 MIR598-201ENST00000384868 97 ntBASIC1.2□□□□□ -2.22
SMARCA1P28370 SNORD77B-201ENST00000391112 67 ntBASIC1.2□□□□□ -2.22
SMARCA1P28370 RNU6-994P-201ENST00000410507 111 ntBASIC1.2□□□□□ -2.22
SMARCA1P28370 RNU7-137P-201ENST00000516788 62 ntBASIC1.2□□□□□ -2.22
SMARCA1P28370 MIR4771-2-201ENST00000577758 74 ntBASIC1.2□□□□□ -2.22
SMARCA1P28370 MIR4771-1-201ENST00000582617 74 ntBASIC1.2□□□□□ -2.22
SMARCA1P28370 FAM71BP1-201ENST00000604431 523 ntBASIC1.2□□□□□ -2.22
SMARCA1P28370 AL670379.3-201ENST00000605040 251 ntBASIC1.2□□□□□ -2.22
SMARCA1P28370 IST1-227ENST00000626438 126 ntTSL 5 BASIC1.2□□□□□ -2.22
SMARCA1P28370 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC1.2□□□□□ -2.22
SMARCA1P28370 AC023934.1-201ENST00000574529 2389 ntBASIC1.2□□□□□ -2.22
SMARCA1P28370 SNORD115-19-201ENST00000363098 82 ntBASIC1.19□□□□□ -2.22
SMARCA1P28370 SNORD115-18-201ENST00000363293 82 ntBASIC1.19□□□□□ -2.22
SMARCA1P28370 SNORD115-17-201ENST00000364612 82 ntBASIC1.19□□□□□ -2.22
SMARCA1P28370 Y_RNA.291-201ENST00000364886 113 ntBASIC1.19□□□□□ -2.22
SMARCA1P28370 SNORD114-24-201ENST00000365029 72 ntBASIC1.19□□□□□ -2.22
SMARCA1P28370 MIR1285-1-201ENST00000408593 84 ntBASIC1.19□□□□□ -2.22
SMARCA1P28370 RNU7-185P-201ENST00000459215 60 ntBASIC1.19□□□□□ -2.22
SMARCA1P28370 AC007012.1-201ENST00000567192 175 ntBASIC1.19□□□□□ -2.22
SMARCA1P28370 AC022709.1-201ENST00000615967 87 ntBASIC1.19□□□□□ -2.22
SMARCA1P28370 MIR1255B1-201ENST00000636325 63 ntBASIC1.19□□□□□ -2.22
SMARCA1P28370 AL391516.1-201ENST00000554380 2449 ntBASIC1.19□□□□□ -2.22
SMARCA1P28370 RNU4-38P-201ENST00000364472 129 ntBASIC1.18□□□□□ -2.22
SMARCA1P28370 RNU6-1081P-201ENST00000384537 107 ntBASIC1.18□□□□□ -2.22
SMARCA1P28370 Y_RNA.549-201ENST00000384657 102 ntBASIC1.18□□□□□ -2.22
SMARCA1P28370 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC1.18□□□□□ -2.22
SMARCA1P28370 AC105081.1-201ENST00000617727 106 ntBASIC1.18□□□□□ -2.22
SMARCA1P28370 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.18□□□□□ -2.22
SMARCA1P28370 SNORD114-10-201ENST00000363409 72 ntBASIC1.17□□□□□ -2.22
SMARCA1P28370 Y_RNA.362-201ENST00000365518 110 ntBASIC1.17□□□□□ -2.22
SMARCA1P28370 RNU6-1144P-201ENST00000384247 104 ntBASIC1.17□□□□□ -2.22
SMARCA1P28370 MIR206-201ENST00000384872 86 ntBASIC1.17□□□□□ -2.22
SMARCA1P28370 RNU6-1307P-201ENST00000391012 103 ntBASIC1.17□□□□□ -2.22
SMARCA1P28370 RNU6-1223P-201ENST00000517124 104 ntBASIC1.17□□□□□ -2.22
SMARCA1P28370 MTND5P34-201ENST00000568888 325 ntBASIC1.17□□□□□ -2.22
SMARCA1P28370 MIR4676-201ENST00000583078 72 ntBASIC1.17□□□□□ -2.22
SMARCA1P28370 AL035470.1-201ENST00000622571 220 ntBASIC1.17□□□□□ -2.22
SMARCA1P28370 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC1.16□□□□□ -2.22
SMARCA1P28370 RNU1-36P-201ENST00000365130 165 ntBASIC1.16□□□□□ -2.22
SMARCA1P28370 RNU6ATAC20P-201ENST00000408436 127 ntBASIC1.16□□□□□ -2.22
SMARCA1P28370 MIR1827-201ENST00000408549 66 ntBASIC1.16□□□□□ -2.22
SMARCA1P28370 SNORD93-201ENST00000408813 74 ntBASIC1.16□□□□□ -2.22
SMARCA1P28370 RNU6-1064P-201ENST00000410626 104 ntBASIC1.16□□□□□ -2.22
SMARCA1P28370 RPS29P1-201ENST00000465274 159 ntBASIC1.16□□□□□ -2.22
SMARCA1P28370 MIR4679-2-201ENST00000578358 77 ntBASIC1.16□□□□□ -2.22
SMARCA1P28370 MIR151B-201ENST00000584249 96 ntBASIC1.16□□□□□ -2.22
SMARCA1P28370 MIR1-1-201ENST00000362147 71 ntBASIC1.15□□□□□ -2.23
SMARCA1P28370 RNU6-1290P-201ENST00000362957 109 ntBASIC1.15□□□□□ -2.23
SMARCA1P28370 RNU1-93P-201ENST00000364704 169 ntBASIC1.15□□□□□ -2.23
SMARCA1P28370 SNORA22-201ENST00000383907 134 ntBASIC1.15□□□□□ -2.23
SMARCA1P28370 RNU6-476P-201ENST00000384726 107 ntBASIC1.15□□□□□ -2.23
SMARCA1P28370 Y_RNA.588-201ENST00000391254 102 ntBASIC1.15□□□□□ -2.23
SMARCA1P28370 MIR942-201ENST00000401111 86 ntBASIC1.15□□□□□ -2.23
SMARCA1P28370 RNU6ATAC33P-201ENST00000408647 126 ntBASIC1.15□□□□□ -2.23
SMARCA1P28370 UBL5P1-201ENST00000507979 193 ntBASIC1.15□□□□□ -2.23
SMARCA1P28370 RNU7-2P-201ENST00000516096 62 ntBASIC1.15□□□□□ -2.23
SMARCA1P28370 MIR4661-201ENST00000582720 75 ntBASIC1.15□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 178.1 ms