Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 RNA5SP237-201ENST00000410414 113 ntBASIC0.22□□□□□ -2.37
COL5A3P25940 RNU6-1258P-201ENST00000516911 111 ntBASIC0.22□□□□□ -2.37
COL5A3P25940 MIR3149-201ENST00000584629 83 ntBASIC0.22□□□□□ -2.37
COL5A3P25940 AL662814.1-201ENST00000617364 121 ntBASIC0.22□□□□□ -2.37
COL5A3P25940 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC0.22□□□□□ -2.37
COL5A3P25940 AC010332.2-201ENST00000613083 1904 ntBASIC0.22□□□□□ -2.37
COL5A3P25940 MIR30D-201ENST00000362283 70 ntBASIC0.21□□□□□ -2.38
COL5A3P25940 RNU6-403P-201ENST00000363163 104 ntBASIC0.21□□□□□ -2.38
COL5A3P25940 Y_RNA.200-201ENST00000364018 102 ntBASIC0.21□□□□□ -2.38
COL5A3P25940 RNU6-818P-201ENST00000364837 108 ntBASIC0.21□□□□□ -2.38
COL5A3P25940 RNU6-702P-201ENST00000364982 107 ntBASIC0.21□□□□□ -2.38
COL5A3P25940 Y_RNA.357-201ENST00000365487 109 ntBASIC0.21□□□□□ -2.38
COL5A3P25940 MIR573-201ENST00000384964 99 ntBASIC0.21□□□□□ -2.38
COL5A3P25940 RNU6-1190P-201ENST00000410811 104 ntBASIC0.21□□□□□ -2.38
COL5A3P25940 RNU7-79P-201ENST00000516082 62 ntBASIC0.21□□□□□ -2.38
COL5A3P25940 RNU6-1023P-201ENST00000516137 106 ntBASIC0.21□□□□□ -2.38
COL5A3P25940 IGHVIII-67-2-201ENST00000519849 88 ntBASIC0.21□□□□□ -2.38
COL5A3P25940 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.21□□□□□ -2.38
COL5A3P25940 MRPS18CP4-201ENST00000535821 231 ntBASIC0.21□□□□□ -2.38
COL5A3P25940 MTND5P34-201ENST00000568888 325 ntBASIC0.21□□□□□ -2.38
COL5A3P25940 Y_RNA.182-201ENST00000363880 111 ntBASIC0.21□□□□□ -2.38
COL5A3P25940 Y_RNA.454-201ENST00000384224 113 ntBASIC0.21□□□□□ -2.38
COL5A3P25940 SNORA20-201ENST00000384662 132 ntBASIC0.21□□□□□ -2.38
COL5A3P25940 U8.15-201ENST00000390947 134 ntBASIC0.21□□□□□ -2.38
COL5A3P25940 Y_RNA.644-201ENST00000459006 113 ntBASIC0.21□□□□□ -2.38
COL5A3P25940 RNA5SP33-201ENST00000516687 98 ntBASIC0.21□□□□□ -2.38
COL5A3P25940 RNU6-111P-201ENST00000517179 105 ntBASIC0.21□□□□□ -2.38
COL5A3P25940 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC0.21□□□□□ -2.38
COL5A3P25940 RNY1P9-201ENST00000532431 109 ntBASIC0.21□□□□□ -2.38
COL5A3P25940 MIR3678-201ENST00000578455 94 ntBASIC0.21□□□□□ -2.38
COL5A3P25940 MIR4667-201ENST00000578933 66 ntBASIC0.21□□□□□ -2.38
COL5A3P25940 MIR3612-201ENST00000579753 87 ntBASIC0.21□□□□□ -2.38
COL5A3P25940 AC009779.6-201ENST00000603972 165 ntBASIC0.21□□□□□ -2.38
COL5A3P25940 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.21□□□□□ -2.38
COL5A3P25940 AC090625.1-201ENST00000357130 210 ntBASIC0.2□□□□□ -2.38
COL5A3P25940 Y_RNA.121-201ENST00000363309 113 ntBASIC0.2□□□□□ -2.38
COL5A3P25940 RNU6-309P-201ENST00000364573 106 ntBASIC0.2□□□□□ -2.38
COL5A3P25940 Y_RNA.307-201ENST00000365022 117 ntBASIC0.2□□□□□ -2.38
COL5A3P25940 RNY1P13-201ENST00000365030 105 ntBASIC0.2□□□□□ -2.38
COL5A3P25940 RNY1P6-201ENST00000384193 109 ntBASIC0.2□□□□□ -2.38
COL5A3P25940 SNORD100-201ENST00000408573 76 ntBASIC0.2□□□□□ -2.38
COL5A3P25940 Y_RNA.617-201ENST00000410920 90 ntBASIC0.2□□□□□ -2.38
COL5A3P25940 RNU6-1086P-201ENST00000410930 100 ntBASIC0.2□□□□□ -2.38
COL5A3P25940 ATP6V0E1P1-201ENST00000412537 226 ntBASIC0.2□□□□□ -2.38
COL5A3P25940 RNA5SP134-201ENST00000516492 96 ntBASIC0.2□□□□□ -2.38
COL5A3P25940 RNU6-1271P-201ENST00000517049 105 ntBASIC0.2□□□□□ -2.38
COL5A3P25940 AC022559.1-201ENST00000520905 205 ntBASIC0.2□□□□□ -2.38
COL5A3P25940 MIR5197-201ENST00000583721 112 ntBASIC0.2□□□□□ -2.38
COL5A3P25940 AC021613.1-201ENST00000623880 111 ntBASIC0.2□□□□□ -2.38
COL5A3P25940 MIR376A2-201ENST00000636782 80 ntBASIC0.2□□□□□ -2.38
COL5A3P25940 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC0.2□□□□□ -2.38
COL5A3P25940 MIR103A1-201ENST00000362165 78 ntBASIC0.19□□□□□ -2.38
COL5A3P25940 MIR411-201ENST00000362239 96 ntBASIC0.19□□□□□ -2.38
COL5A3P25940 SNORD18B-201ENST00000365659 72 ntBASIC0.19□□□□□ -2.38
COL5A3P25940 RNU6-643P-201ENST00000384018 107 ntBASIC0.19□□□□□ -2.38
COL5A3P25940 Y_RNA.452-201ENST00000384202 108 ntBASIC0.19□□□□□ -2.38
COL5A3P25940 Y_RNA.562-201ENST00000384695 113 ntBASIC0.19□□□□□ -2.38
COL5A3P25940 RNU6-535P-201ENST00000384722 107 ntBASIC0.19□□□□□ -2.38
COL5A3P25940 Y_RNA.668-201ENST00000516233 93 ntBASIC0.19□□□□□ -2.38
COL5A3P25940 MIR3646-201ENST00000578301 84 ntBASIC0.19□□□□□ -2.38
COL5A3P25940 SNORD44.1-201ENST00000363202 61 ntBASIC0.18□□□□□ -2.38
COL5A3P25940 Y_RNA.337-201ENST00000365312 102 ntBASIC0.18□□□□□ -2.38
COL5A3P25940 Y_RNA.478-201ENST00000384358 107 ntBASIC0.18□□□□□ -2.38
COL5A3P25940 Y_RNA.489-201ENST00000384410 101 ntBASIC0.18□□□□□ -2.38
COL5A3P25940 Y_RNA.515-201ENST00000384535 112 ntBASIC0.18□□□□□ -2.38
COL5A3P25940 Y_RNA.531-201ENST00000384589 121 ntBASIC0.18□□□□□ -2.38
COL5A3P25940 AL512326.2-201ENST00000426359 151 ntBASIC0.18□□□□□ -2.38
COL5A3P25940 HMGN2P22-201ENST00000427588 175 ntBASIC0.18□□□□□ -2.38
COL5A3P25940 RNU7-113P-201ENST00000459273 62 ntBASIC0.18□□□□□ -2.38
COL5A3P25940 RNU7-35P-201ENST00000517174 62 ntBASIC0.18□□□□□ -2.38
COL5A3P25940 MIR5093-201ENST00000583199 100 ntBASIC0.18□□□□□ -2.38
COL5A3P25940 DNAJC19P2-201ENST00000593340 302 ntBASIC0.18□□□□□ -2.38
COL5A3P25940 AC092634.7-201ENST00000621022 103 ntBASIC0.18□□□□□ -2.38
COL5A3P25940 uc_338.16-201ENST00000621804 95 ntBASIC0.18□□□□□ -2.38
COL5A3P25940 AC099654.10-201ENST00000640395 161 ntBASIC0.18□□□□□ -2.38
COL5A3P25940 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC0.18□□□□□ -2.38
COL5A3P25940 RNU6-508P-201ENST00000363231 103 ntBASIC0.18□□□□□ -2.38
COL5A3P25940 Y_RNA.171-201ENST00000363760 102 ntBASIC0.18□□□□□ -2.38
COL5A3P25940 Y_RNA.188-201ENST00000363952 111 ntBASIC0.18□□□□□ -2.38
COL5A3P25940 RNY1P8-201ENST00000383970 114 ntBASIC0.18□□□□□ -2.38
COL5A3P25940 Y_RNA.470-201ENST00000384307 117 ntBASIC0.18□□□□□ -2.38
COL5A3P25940 RNU6-463P-201ENST00000384340 107 ntBASIC0.18□□□□□ -2.38
COL5A3P25940 SNORA18-201ENST00000384416 132 ntBASIC0.18□□□□□ -2.38
COL5A3P25940 Y_RNA.536-201ENST00000384621 113 ntBASIC0.18□□□□□ -2.38
COL5A3P25940 MIR140-201ENST00000385282 100 ntBASIC0.18□□□□□ -2.38
COL5A3P25940 AL078595.1-201ENST00000404458 226 ntBASIC0.18□□□□□ -2.38
COL5A3P25940 MIR1257-201ENST00000408490 117 ntBASIC0.18□□□□□ -2.38
COL5A3P25940 AC096949.1-201ENST00000412047 152 ntBASIC0.18□□□□□ -2.38
COL5A3P25940 RNA5SP236-201ENST00000516169 116 ntBASIC0.18□□□□□ -2.38
COL5A3P25940 Y_RNA.674-201ENST00000516362 113 ntBASIC0.18□□□□□ -2.38
COL5A3P25940 SNORA31.14-201ENST00000516728 116 ntBASIC0.18□□□□□ -2.38
COL5A3P25940 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC0.18□□□□□ -2.38
COL5A3P25940 AC011603.4-201ENST00000611325 277 ntBASIC0.18□□□□□ -2.38
COL5A3P25940 MIR198-201ENST00000637333 62 ntBASIC0.18□□□□□ -2.38
COL5A3P25940 Y_RNA.42-201ENST00000362660 108 ntBASIC0.17□□□□□ -2.38
COL5A3P25940 RNU6-275P-201ENST00000364910 107 ntBASIC0.17□□□□□ -2.38
COL5A3P25940 Y_RNA.299-201ENST00000364973 94 ntBASIC0.17□□□□□ -2.38
COL5A3P25940 RNU6-1327P-201ENST00000365302 105 ntBASIC0.17□□□□□ -2.38
COL5A3P25940 RNU4-83P-201ENST00000410863 133 ntBASIC0.17□□□□□ -2.38
COL5A3P25940 RNU6-1135P-201ENST00000411083 103 ntBASIC0.17□□□□□ -2.38
Retrieved 100 of 98,524 protein–RNA pairs in 167.4 ms