Protein–RNA interactions for Protein: P0CW19

LIMS3, LIM and senescent cell antigen-like-containing domain protein 3, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3P0CW19 Y_RNA.610-201ENST00000410681 103 ntBASIC-1.11□□□□□ -2.59
LIMS3P0CW19 RNA5SP169-201ENST00000517268 117 ntBASIC-1.11□□□□□ -2.59
LIMS3P0CW19 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC-1.11□□□□□ -2.59
LIMS3P0CW19 MTND5P40-201ENST00000559945 246 ntBASIC-1.11□□□□□ -2.59
LIMS3P0CW19 AL359881.1-201ENST00000602916 267 ntBASIC-1.11□□□□□ -2.59
LIMS3P0CW19 AC112487.2-201ENST00000637950 304 ntBASIC-1.11□□□□□ -2.59
LIMS3P0CW19 Y_RNA.152-201ENST00000363578 100 ntBASIC-1.12□□□□□ -2.59
LIMS3P0CW19 RNU6-35P-201ENST00000384530 107 ntBASIC-1.12□□□□□ -2.59
LIMS3P0CW19 MIR519A1-201ENST00000385257 85 ntBASIC-1.12□□□□□ -2.59
LIMS3P0CW19 MIR616-201ENST00000385293 97 ntBASIC-1.12□□□□□ -2.59
LIMS3P0CW19 RNA5SP25-201ENST00000410815 110 ntBASIC-1.12□□□□□ -2.59
LIMS3P0CW19 SCARNA20.2-201ENST00000516052 116 ntBASIC-1.12□□□□□ -2.59
LIMS3P0CW19 SCARNA15-202ENST00000516881 127 ntBASIC-1.12□□□□□ -2.59
LIMS3P0CW19 Y_RNA.68-201ENST00000362881 102 ntBASIC-1.13□□□□□ -2.59
LIMS3P0CW19 Y_RNA.384-201ENST00000383909 102 ntBASIC-1.13□□□□□ -2.59
LIMS3P0CW19 RNU6-211P-201ENST00000384047 107 ntBASIC-1.13□□□□□ -2.59
LIMS3P0CW19 RNY1P6-201ENST00000384193 109 ntBASIC-1.13□□□□□ -2.59
LIMS3P0CW19 MIR548I2-201ENST00000408348 149 ntBASIC-1.13□□□□□ -2.59
LIMS3P0CW19 MTATP6P23-201ENST00000440153 476 ntBASIC-1.13□□□□□ -2.59
LIMS3P0CW19 Z83846.1-201ENST00000446798 265 ntBASIC-1.13□□□□□ -2.59
LIMS3P0CW19 RNU7-152P-201ENST00000458982 64 ntBASIC-1.13□□□□□ -2.59
LIMS3P0CW19 AC084781.2-201ENST00000615568 161 ntBASIC-1.13□□□□□ -2.59
LIMS3P0CW19 SNORA63.7-201ENST00000365579 123 ntBASIC-1.14□□□□□ -2.59
LIMS3P0CW19 RNU6-976P-201ENST00000516086 111 ntBASIC-1.14□□□□□ -2.59
LIMS3P0CW19 MIR4500-201ENST00000579472 76 ntBASIC-1.14□□□□□ -2.59
LIMS3P0CW19 YWHAEP2-201ENST00000580066 112 ntBASIC-1.14□□□□□ -2.59
LIMS3P0CW19 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC-1.14□□□□□ -2.59
LIMS3P0CW19 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC-1.14□□□□□ -2.59
LIMS3P0CW19 Y_RNA.154-201ENST00000363624 102 ntBASIC-1.15□□□□□ -2.59
LIMS3P0CW19 AC082651.2-201ENST00000496833 166 ntBASIC-1.15□□□□□ -2.59
LIMS3P0CW19 Y_RNA.809-201ENST00000516058 95 ntBASIC-1.15□□□□□ -2.59
LIMS3P0CW19 RNU6-1149P-201ENST00000516810 97 ntBASIC-1.15□□□□□ -2.59
LIMS3P0CW19 RNU6-175P-201ENST00000516896 107 ntBASIC-1.15□□□□□ -2.59
LIMS3P0CW19 AC006504.6-201ENST00000590142 199 ntBASIC-1.15□□□□□ -2.59
LIMS3P0CW19 UBE2WP1-201ENST00000362030 340 ntBASIC-1.16□□□□□ -2.6
LIMS3P0CW19 Y_RNA.5-201ENST00000362334 102 ntBASIC-1.16□□□□□ -2.6
LIMS3P0CW19 Y_RNA.120-201ENST00000363304 110 ntBASIC-1.16□□□□□ -2.6
LIMS3P0CW19 Y_RNA.176-201ENST00000363815 109 ntBASIC-1.16□□□□□ -2.6
LIMS3P0CW19 MIR204-201ENST00000385200 110 ntBASIC-1.16□□□□□ -2.6
LIMS3P0CW19 MIR1302-11-201ENST00000408051 138 ntBASIC-1.16□□□□□ -2.6
LIMS3P0CW19 MIR1302-9-201ENST00000408365 138 ntBASIC-1.16□□□□□ -2.6
LIMS3P0CW19 MIR1302-10-201ENST00000408734 138 ntBASIC-1.16□□□□□ -2.6
LIMS3P0CW19 AC021146.6-201ENST00000514659 117 ntBASIC-1.16□□□□□ -2.6
LIMS3P0CW19 MTRNR2L2-201ENST00000604882 87 ntBASIC-1.16□□□□□ -2.6
LIMS3P0CW19 MIR1302-2-201ENST00000607096 138 ntBASIC-1.16□□□□□ -2.6
LIMS3P0CW19 AC090574.1-201ENST00000623186 233 ntBASIC-1.16□□□□□ -2.6
LIMS3P0CW19 Y_RNA.246-201ENST00000364495 108 ntBASIC-1.17□□□□□ -2.6
LIMS3P0CW19 MIR539-201ENST00000365690 78 ntBASIC-1.17□□□□□ -2.6
LIMS3P0CW19 MIR9-2-201ENST00000384838 87 ntBASIC-1.17□□□□□ -2.6
LIMS3P0CW19 MIR196A1-201ENST00000388006 70 ntBASIC-1.17□□□□□ -2.6
LIMS3P0CW19 AC016907.1-201ENST00000419483 435 ntBASIC-1.17□□□□□ -2.6
LIMS3P0CW19 RNU6-453P-201ENST00000516819 85 ntBASIC-1.17□□□□□ -2.6
LIMS3P0CW19 MIR548AE2-201ENST00000583456 67 ntBASIC-1.17□□□□□ -2.6
LIMS3P0CW19 AC073869.6-201ENST00000640656 341 ntBASIC-1.17□□□□□ -2.6
LIMS3P0CW19 RNU6-1260P-201ENST00000362944 107 ntBASIC-1.18□□□□□ -2.6
LIMS3P0CW19 RNU6-1244P-201ENST00000363614 108 ntBASIC-1.18□□□□□ -2.6
LIMS3P0CW19 Y_RNA.318-201ENST00000365131 97 ntBASIC-1.18□□□□□ -2.6
LIMS3P0CW19 MIR617-201ENST00000385030 97 ntBASIC-1.18□□□□□ -2.6
LIMS3P0CW19 MIR519E-201ENST00000385075 84 ntBASIC-1.18□□□□□ -2.6
LIMS3P0CW19 MT-TL1-201ENST00000386347 75 ntBASIC-1.18□□□□□ -2.6
LIMS3P0CW19 RNU6-876P-201ENST00000391295 104 ntBASIC-1.18□□□□□ -2.6
LIMS3P0CW19 AC093423.1-201ENST00000440817 142 ntBASIC-1.18□□□□□ -2.6
LIMS3P0CW19 RNU7-195P-201ENST00000458793 62 ntBASIC-1.18□□□□□ -2.6
LIMS3P0CW19 MIR548AX-201ENST00000580117 73 ntBASIC-1.18□□□□□ -2.6
LIMS3P0CW19 AC020913.3-201ENST00000594678 125 ntTSL 3 BASIC-1.18□□□□□ -2.6
LIMS3P0CW19 snoU2_19.4-201ENST00000364329 80 ntBASIC-1.19□□□□□ -2.6
LIMS3P0CW19 SNORD114-15-201ENST00000364687 72 ntBASIC-1.19□□□□□ -2.6
LIMS3P0CW19 RNU6-728P-201ENST00000365375 104 ntBASIC-1.19□□□□□ -2.6
LIMS3P0CW19 RNU6-1201P-201ENST00000384227 107 ntBASIC-1.19□□□□□ -2.6
LIMS3P0CW19 RNU6-524P-201ENST00000384270 107 ntBASIC-1.19□□□□□ -2.6
LIMS3P0CW19 RNU6-154P-201ENST00000384306 106 ntBASIC-1.19□□□□□ -2.6
LIMS3P0CW19 SNORD63B-201ENST00000411005 70 ntBASIC-1.19□□□□□ -2.6
LIMS3P0CW19 RNU6-277P-201ENST00000516272 106 ntBASIC-1.19□□□□□ -2.6
LIMS3P0CW19 SNORD115-44-201ENST00000365391 82 ntBASIC-1.2□□□□□ -2.6
LIMS3P0CW19 Y_RNA.416-201ENST00000384014 113 ntBASIC-1.2□□□□□ -2.6
LIMS3P0CW19 Y_RNA.541-201ENST00000384640 113 ntBASIC-1.2□□□□□ -2.6
LIMS3P0CW19 Y_RNA.562-201ENST00000384695 113 ntBASIC-1.2□□□□□ -2.6
LIMS3P0CW19 MIR624-201ENST00000385217 97 ntBASIC-1.2□□□□□ -2.6
LIMS3P0CW19 RNU6-1133P-201ENST00000410963 100 ntBASIC-1.2□□□□□ -2.6
LIMS3P0CW19 AC023051.1-201ENST00000414098 876 ntTSL 5 BASIC-1.2□□□□□ -2.6
LIMS3P0CW19 AL445193.1-201ENST00000441183 141 ntBASIC-1.2□□□□□ -2.6
LIMS3P0CW19 FGF7P6-202ENST00000451282 293 ntBASIC-1.2□□□□□ -2.6
LIMS3P0CW19 SCARNA17-201ENST00000516183 144 ntBASIC-1.2□□□□□ -2.6
LIMS3P0CW19 SNORD116-25-201ENST00000516517 92 ntBASIC-1.2□□□□□ -2.6
LIMS3P0CW19 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC-1.2□□□□□ -2.6
LIMS3P0CW19 MIR4460-201ENST00000577862 86 ntBASIC-1.2□□□□□ -2.6
LIMS3P0CW19 RNU6-1036P-201ENST00000383959 104 ntBASIC-1.21□□□□□ -2.6
LIMS3P0CW19 RNU6-900P-201ENST00000384498 102 ntBASIC-1.21□□□□□ -2.6
LIMS3P0CW19 RNU6-901P-201ENST00000384593 106 ntBASIC-1.21□□□□□ -2.6
LIMS3P0CW19 RNU6-1321P-201ENST00000390905 107 ntBASIC-1.21□□□□□ -2.6
LIMS3P0CW19 RNU4-43P-201ENST00000410628 137 ntBASIC-1.21□□□□□ -2.6
LIMS3P0CW19 RNU7-48P-201ENST00000458875 63 ntBASIC-1.21□□□□□ -2.6
LIMS3P0CW19 MIR548AE1-201ENST00000583292 70 ntBASIC-1.21□□□□□ -2.6
LIMS3P0CW19 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC-1.22□□□□□ -2.6
LIMS3P0CW19 RNU6-170P-201ENST00000362832 104 ntBASIC-1.22□□□□□ -2.6
LIMS3P0CW19 Y_RNA.294-201ENST00000364916 102 ntBASIC-1.22□□□□□ -2.6
LIMS3P0CW19 Y_RNA.407-201ENST00000383986 113 ntBASIC-1.22□□□□□ -2.6
LIMS3P0CW19 Y_RNA.531-201ENST00000384589 121 ntBASIC-1.22□□□□□ -2.6
LIMS3P0CW19 MIR548AG2-201ENST00000581228 64 ntBASIC-1.22□□□□□ -2.6
LIMS3P0CW19 Y_RNA.98-201ENST00000363109 102 ntBASIC-1.23□□□□□ -2.61
Retrieved 100 of 98,524 protein–RNA pairs in 161.6 ms