Protein–RNA interactions for Protein: Q9Y6R9

CCDC61, Coiled-coil domain-containing protein 61, humanhuman

Predictions only

Length 512 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC61Q9Y6R9 RNU7-41P-201ENST00000515917 61 ntBASIC3.66□□□□□ -1.82
CCDC61Q9Y6R9 MIR3605-201ENST00000583214 100 ntBASIC3.66□□□□□ -1.82
CCDC61Q9Y6R9 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC3.66□□□□□ -1.82
CCDC61Q9Y6R9 AL021368.2-201ENST00000606125 5352 ntBASIC3.65□□□□□ -1.83
CCDC61Q9Y6R9 RNA5SP48-201ENST00000363969 126 ntBASIC3.65□□□□□ -1.83
CCDC61Q9Y6R9 RNU6-604P-201ENST00000390917 100 ntBASIC3.65□□□□□ -1.83
CCDC61Q9Y6R9 MIR887-201ENST00000401258 79 ntBASIC3.65□□□□□ -1.83
CCDC61Q9Y6R9 MIR3126-201ENST00000577443 74 ntBASIC3.65□□□□□ -1.83
CCDC61Q9Y6R9 U6.81-201ENST00000612550 106 ntBASIC3.65□□□□□ -1.83
CCDC61Q9Y6R9 MIR7153-201ENST00000637758 57 ntBASIC3.65□□□□□ -1.83
CCDC61Q9Y6R9 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
CCDC61Q9Y6R9 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC3.64□□□□□ -1.83
CCDC61Q9Y6R9 Y_RNA.236-201ENST00000364427 111 ntBASIC3.64□□□□□ -1.83
CCDC61Q9Y6R9 AL691482.2-201ENST00000457453 84 ntBASIC3.64□□□□□ -1.83
CCDC61Q9Y6R9 AC008413.1-201ENST00000511864 177 ntBASIC3.64□□□□□ -1.83
CCDC61Q9Y6R9 RNU6-322P-201ENST00000516010 103 ntBASIC3.64□□□□□ -1.83
CCDC61Q9Y6R9 RNVU1-2-201ENST00000516326 135 ntBASIC3.64□□□□□ -1.83
CCDC61Q9Y6R9 RNU6-531P-201ENST00000516694 104 ntBASIC3.64□□□□□ -1.83
CCDC61Q9Y6R9 RNU2-19P-201ENST00000517288 84 ntBASIC3.64□□□□□ -1.83
CCDC61Q9Y6R9 AC104984.5-201ENST00000586878 94 ntBASIC3.64□□□□□ -1.83
CCDC61Q9Y6R9 AC022202.1-201ENST00000613515 211 ntBASIC3.64□□□□□ -1.83
CCDC61Q9Y6R9 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC3.64□□□□□ -1.83
CCDC61Q9Y6R9 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC3.63□□□□□ -1.83
CCDC61Q9Y6R9 RNU6-829P-201ENST00000363700 112 ntBASIC3.63□□□□□ -1.83
CCDC61Q9Y6R9 SNORA24B-201ENST00000384176 131 ntBASIC3.63□□□□□ -1.83
CCDC61Q9Y6R9 SNORA70B-201ENST00000384210 135 ntBASIC3.63□□□□□ -1.83
CCDC61Q9Y6R9 RNU11-2P-201ENST00000516898 142 ntBASIC3.63□□□□□ -1.83
CCDC61Q9Y6R9 SNORD53-201ENST00000579969 78 ntBASIC3.63□□□□□ -1.83
CCDC61Q9Y6R9 MIR3140-201ENST00000583685 90 ntBASIC3.63□□□□□ -1.83
CCDC61Q9Y6R9 MIR6715A-201ENST00000615929 79 ntBASIC3.63□□□□□ -1.83
CCDC61Q9Y6R9 DLEU2_3.1-201ENST00000620005 73 ntBASIC3.63□□□□□ -1.83
CCDC61Q9Y6R9 TRDV1-202ENST00000621643 102 ntBASIC3.63□□□□□ -1.83
CCDC61Q9Y6R9 MIR30D-201ENST00000362283 70 ntBASIC3.62□□□□□ -1.83
CCDC61Q9Y6R9 RNU6-664P-201ENST00000362381 107 ntBASIC3.62□□□□□ -1.83
CCDC61Q9Y6R9 RNU1-91P-201ENST00000364746 163 ntBASIC3.62□□□□□ -1.83
CCDC61Q9Y6R9 MIR2113-201ENST00000459007 91 ntBASIC3.62□□□□□ -1.83
CCDC61Q9Y6R9 RNA5SP24-201ENST00000516478 95 ntBASIC3.62□□□□□ -1.83
CCDC61Q9Y6R9 MIR5089-201ENST00000580047 84 ntBASIC3.62□□□□□ -1.83
CCDC61Q9Y6R9 DLEU2_6.1-201ENST00000610536 112 ntBASIC3.62□□□□□ -1.83
CCDC61Q9Y6R9 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC3.62□□□□□ -1.83
CCDC61Q9Y6R9 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
CCDC61Q9Y6R9 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
CCDC61Q9Y6R9 SNORD101-201ENST00000384027 73 ntBASIC3.61□□□□□ -1.83
CCDC61Q9Y6R9 RNU6-1165P-201ENST00000410119 107 ntBASIC3.61□□□□□ -1.83
CCDC61Q9Y6R9 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC3.61□□□□□ -1.83
CCDC61Q9Y6R9 AP004217.1-201ENST00000480579 346 ntBASIC3.61□□□□□ -1.83
CCDC61Q9Y6R9 PRELID3BP2-201ENST00000605362 201 ntBASIC3.61□□□□□ -1.83
CCDC61Q9Y6R9 RNU7-10P-201ENST00000607194 63 ntBASIC3.61□□□□□ -1.83
CCDC61Q9Y6R9 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.61□□□□□ -1.83
CCDC61Q9Y6R9 RNU6-112P-201ENST00000363599 104 ntBASIC3.6□□□□□ -1.83
CCDC61Q9Y6R9 MIR27B-201ENST00000385129 97 ntBASIC3.6□□□□□ -1.83
CCDC61Q9Y6R9 MT-TF-201ENST00000387314 71 ntBASIC3.6□□□□□ -1.83
CCDC61Q9Y6R9 RNU6ATAC33P-201ENST00000408647 126 ntBASIC3.6□□□□□ -1.83
CCDC61Q9Y6R9 SNORA9.3-201ENST00000516383 129 ntBASIC3.6□□□□□ -1.83
CCDC61Q9Y6R9 Y_RNA.722-201ENST00000517279 114 ntBASIC3.6□□□□□ -1.83
CCDC61Q9Y6R9 MIR6740-201ENST00000618268 113 ntBASIC3.6□□□□□ -1.83
CCDC61Q9Y6R9 AC093010.3-201ENST00000570269 15214 ntBASIC3.6□□□□□ -1.83
CCDC61Q9Y6R9 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC3.59□□□□□ -1.83
CCDC61Q9Y6R9 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC3.59□□□□□ -1.83
CCDC61Q9Y6R9 RNU6-396P-201ENST00000365369 105 ntBASIC3.59□□□□□ -1.83
CCDC61Q9Y6R9 SNORA48.1-201ENST00000390879 135 ntBASIC3.59□□□□□ -1.83
CCDC61Q9Y6R9 RNA5SP465-201ENST00000391195 109 ntBASIC3.59□□□□□ -1.83
CCDC61Q9Y6R9 SNORA3.2-201ENST00000408221 125 ntBASIC3.59□□□□□ -1.83
CCDC61Q9Y6R9 RNU6ATAC37P-201ENST00000408328 131 ntBASIC3.59□□□□□ -1.83
CCDC61Q9Y6R9 RNU7-195P-201ENST00000458793 62 ntBASIC3.59□□□□□ -1.83
CCDC61Q9Y6R9 RNU7-26P-201ENST00000458980 63 ntBASIC3.59□□□□□ -1.83
CCDC61Q9Y6R9 RNA5SP320-201ENST00000516263 124 ntBASIC3.59□□□□□ -1.83
CCDC61Q9Y6R9 MIR4696-201ENST00000581431 70 ntBASIC3.59□□□□□ -1.83
CCDC61Q9Y6R9 MIR4264-201ENST00000583520 66 ntBASIC3.59□□□□□ -1.83
CCDC61Q9Y6R9 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC3.59□□□□□ -1.84
CCDC61Q9Y6R9 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
CCDC61Q9Y6R9 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
CCDC61Q9Y6R9 RNU6-824P-201ENST00000363724 104 ntBASIC3.58□□□□□ -1.84
CCDC61Q9Y6R9 RNU6-1187P-201ENST00000364771 110 ntBASIC3.58□□□□□ -1.84
CCDC61Q9Y6R9 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC3.58□□□□□ -1.84
CCDC61Q9Y6R9 MIR4635-201ENST00000583759 79 ntBASIC3.58□□□□□ -1.84
CCDC61Q9Y6R9 DLEU2_3.2-201ENST00000612883 73 ntBASIC3.58□□□□□ -1.84
CCDC61Q9Y6R9 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
CCDC61Q9Y6R9 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
CCDC61Q9Y6R9 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC3.57□□□□□ -1.84
CCDC61Q9Y6R9 MIR101-2-201ENST00000362195 79 ntBASIC3.57□□□□□ -1.84
CCDC61Q9Y6R9 RNU1-138P-201ENST00000384093 164 ntBASIC3.57□□□□□ -1.84
CCDC61Q9Y6R9 HMGN2P3-201ENST00000433603 273 ntBASIC3.57□□□□□ -1.84
CCDC61Q9Y6R9 HMGN2P5-201ENST00000436882 273 ntBASIC3.57□□□□□ -1.84
CCDC61Q9Y6R9 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC3.57□□□□□ -1.84
CCDC61Q9Y6R9 SNORA50A-202ENST00000629536 136 ntBASIC3.57□□□□□ -1.84
CCDC61Q9Y6R9 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC3.57□□□□□ -1.84
CCDC61Q9Y6R9 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
CCDC61Q9Y6R9 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
CCDC61Q9Y6R9 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC3.57□□□□□ -1.84
CCDC61Q9Y6R9 RNA5SP289-201ENST00000362332 137 ntBASIC3.56□□□□□ -1.84
CCDC61Q9Y6R9 Y_RNA.536-201ENST00000384621 113 ntBASIC3.56□□□□□ -1.84
CCDC61Q9Y6R9 MIR519A1-201ENST00000385257 85 ntBASIC3.56□□□□□ -1.84
CCDC61Q9Y6R9 Y_RNA.809-201ENST00000516058 95 ntBASIC3.56□□□□□ -1.84
CCDC61Q9Y6R9 SNORA25.16-201ENST00000516741 121 ntBASIC3.56□□□□□ -1.84
CCDC61Q9Y6R9 MIR548H5-201ENST00000580314 60 ntBASIC3.56□□□□□ -1.84
CCDC61Q9Y6R9 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
CCDC61Q9Y6R9 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
CCDC61Q9Y6R9 RNU6-1123P-201ENST00000362347 106 ntBASIC3.55□□□□□ -1.84
CCDC61Q9Y6R9 RNU6-808P-201ENST00000391233 108 ntBASIC3.55□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 193.9 ms