Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 RNU6-170P-201ENST00000362832 104 ntBASIC2.09□□□□□ -2.07
USHBP1Q8N6Y0 SNORD115-35-201ENST00000365122 82 ntBASIC2.09□□□□□ -2.07
USHBP1Q8N6Y0 Y_RNA.377-201ENST00000365644 108 ntBASIC2.09□□□□□ -2.07
USHBP1Q8N6Y0 SNORA26.2-201ENST00000390922 122 ntBASIC2.09□□□□□ -2.07
USHBP1Q8N6Y0 AC012531.4-201ENST00000616509 177 ntBASIC2.09□□□□□ -2.07
USHBP1Q8N6Y0 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC2.09□□□□□ -2.07
USHBP1Q8N6Y0 SNORD45B-201ENST00000364617 72 ntBASIC2.08□□□□□ -2.08
USHBP1Q8N6Y0 AL451046.2-201ENST00000403074 277 ntBASIC2.08□□□□□ -2.08
USHBP1Q8N6Y0 RNY4P29-201ENST00000410801 97 ntBASIC2.08□□□□□ -2.08
USHBP1Q8N6Y0 RNU6-602P-201ENST00000411155 105 ntBASIC2.08□□□□□ -2.08
USHBP1Q8N6Y0 AC004941.2-201ENST00000427009 228 ntBASIC2.08□□□□□ -2.08
USHBP1Q8N6Y0 JTBP1-201ENST00000441314 247 ntBASIC2.08□□□□□ -2.08
USHBP1Q8N6Y0 RNU6-795P-201ENST00000516323 103 ntBASIC2.08□□□□□ -2.08
USHBP1Q8N6Y0 RNU7-35P-201ENST00000517174 62 ntBASIC2.08□□□□□ -2.08
USHBP1Q8N6Y0 CYP3A52P-201ENST00000563326 91 ntBASIC2.08□□□□□ -2.08
USHBP1Q8N6Y0 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC2.08□□□□□ -2.08
USHBP1Q8N6Y0 FAS-AS1.2-201ENST00000620386 170 ntBASIC2.08□□□□□ -2.08
USHBP1Q8N6Y0 MIR8065-201ENST00000620577 100 ntBASIC2.08□□□□□ -2.08
USHBP1Q8N6Y0 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC2.08□□□□□ -2.08
USHBP1Q8N6Y0 MIR337-201ENST00000362281 93 ntBASIC2.07□□□□□ -2.08
USHBP1Q8N6Y0 RNY1P10-201ENST00000363268 113 ntBASIC2.07□□□□□ -2.08
USHBP1Q8N6Y0 RNA5SP259-201ENST00000365541 109 ntBASIC2.07□□□□□ -2.08
USHBP1Q8N6Y0 RNU6-1201P-201ENST00000384227 107 ntBASIC2.07□□□□□ -2.08
USHBP1Q8N6Y0 RNU6-342P-201ENST00000384521 104 ntBASIC2.07□□□□□ -2.08
USHBP1Q8N6Y0 AL161935.2-201ENST00000414627 60 ntBASIC2.07□□□□□ -2.08
USHBP1Q8N6Y0 MIR548AO-201ENST00000579992 96 ntBASIC2.07□□□□□ -2.08
USHBP1Q8N6Y0 AC096720.1-201ENST00000604441 183 ntBASIC2.07□□□□□ -2.08
USHBP1Q8N6Y0 MIR4251-201ENST00000635819 61 ntBASIC2.07□□□□□ -2.08
USHBP1Q8N6Y0 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC2.07□□□□□ -2.08
USHBP1Q8N6Y0 RNU6-1313P-201ENST00000362622 102 ntBASIC2.06□□□□□ -2.08
USHBP1Q8N6Y0 Y_RNA.96-201ENST00000363092 109 ntBASIC2.06□□□□□ -2.08
USHBP1Q8N6Y0 SNORD38B-201ENST00000384690 67 ntBASIC2.06□□□□□ -2.08
USHBP1Q8N6Y0 MIR513A1-201ENST00000385138 129 ntBASIC2.06□□□□□ -2.08
USHBP1Q8N6Y0 RNU6-644P-201ENST00000391155 98 ntBASIC2.06□□□□□ -2.08
USHBP1Q8N6Y0 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC2.06□□□□□ -2.08
USHBP1Q8N6Y0 RNU7-2P-201ENST00000516096 62 ntBASIC2.06□□□□□ -2.08
USHBP1Q8N6Y0 RNU6-762P-201ENST00000517107 102 ntBASIC2.06□□□□□ -2.08
USHBP1Q8N6Y0 AC026421.1-201ENST00000519101 163 ntBASIC2.06□□□□□ -2.08
USHBP1Q8N6Y0 SNORD38B-202ENST00000625943 69 ntBASIC2.06□□□□□ -2.08
USHBP1Q8N6Y0 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC2.05□□□□□ -2.08
USHBP1Q8N6Y0 Y_RNA.327-201ENST00000365201 102 ntBASIC2.05□□□□□ -2.08
USHBP1Q8N6Y0 SNORA67.6-201ENST00000391093 99 ntBASIC2.05□□□□□ -2.08
USHBP1Q8N6Y0 RNU7-61P-201ENST00000515897 61 ntBASIC2.05□□□□□ -2.08
USHBP1Q8N6Y0 Y_RNA.659-201ENST00000515994 113 ntBASIC2.05□□□□□ -2.08
USHBP1Q8N6Y0 RNU7-79P-201ENST00000516082 62 ntBASIC2.05□□□□□ -2.08
USHBP1Q8N6Y0 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC2.04□□□□□ -2.08
USHBP1Q8N6Y0 Y_RNA.95-201ENST00000363079 95 ntBASIC2.04□□□□□ -2.08
USHBP1Q8N6Y0 Y_RNA.388-201ENST00000383919 113 ntBASIC2.04□□□□□ -2.08
USHBP1Q8N6Y0 RNU6-1086P-201ENST00000410930 100 ntBASIC2.04□□□□□ -2.08
USHBP1Q8N6Y0 AC009474.2-201ENST00000451383 136 ntBASIC2.04□□□□□ -2.08
USHBP1Q8N6Y0 RNU7-41P-201ENST00000515917 61 ntBASIC2.04□□□□□ -2.08
USHBP1Q8N6Y0 MIR4713-201ENST00000582691 75 ntBASIC2.04□□□□□ -2.08
USHBP1Q8N6Y0 MIR4777-201ENST00000583710 86 ntBASIC2.04□□□□□ -2.08
USHBP1Q8N6Y0 AL096840.1-201ENST00000603287 93 ntBASIC2.04□□□□□ -2.08
USHBP1Q8N6Y0 AL627230.6-201ENST00000611129 280 ntBASIC2.04□□□□□ -2.08
USHBP1Q8N6Y0 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC2.04□□□□□ -2.08
USHBP1Q8N6Y0 Y_RNA.290-201ENST00000364879 114 ntBASIC2.03□□□□□ -2.08
USHBP1Q8N6Y0 RNU6-820P-201ENST00000384273 107 ntBASIC2.03□□□□□ -2.08
USHBP1Q8N6Y0 MIR499A-201ENST00000384903 122 ntBASIC2.03□□□□□ -2.08
USHBP1Q8N6Y0 MIR450A2-201ENST00000385022 100 ntBASIC2.03□□□□□ -2.08
USHBP1Q8N6Y0 MRPL35P3-201ENST00000421557 364 ntBASIC2.03□□□□□ -2.08
USHBP1Q8N6Y0 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC2.03□□□□□ -2.08
USHBP1Q8N6Y0 AL359851.1-201ENST00000569460 4997 ntBASIC2.03□□□□□ -2.08
USHBP1Q8N6Y0 SNORA7.1-201ENST00000363750 139 ntBASIC2.02□□□□□ -2.09
USHBP1Q8N6Y0 MIR206-201ENST00000384872 86 ntBASIC2.02□□□□□ -2.09
USHBP1Q8N6Y0 RPL31P63-201ENST00000422565 375 ntBASIC2.02□□□□□ -2.09
USHBP1Q8N6Y0 MIR4439-201ENST00000583746 80 ntBASIC2.02□□□□□ -2.09
USHBP1Q8N6Y0 MIR548Z-201ENST00000584743 97 ntBASIC2.02□□□□□ -2.09
USHBP1Q8N6Y0 U7.3-201ENST00000616123 62 ntBASIC2.02□□□□□ -2.09
USHBP1Q8N6Y0 AC091304.10-201ENST00000641554 121 ntBASIC2.02□□□□□ -2.09
USHBP1Q8N6Y0 SNORA25.9-201ENST00000365087 128 ntBASIC2.01□□□□□ -2.09
USHBP1Q8N6Y0 RNU6-1134P-201ENST00000365156 101 ntBASIC2.01□□□□□ -2.09
USHBP1Q8N6Y0 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC2.01□□□□□ -2.09
USHBP1Q8N6Y0 RNU6ATAC41P-201ENST00000408600 126 ntBASIC2.01□□□□□ -2.09
USHBP1Q8N6Y0 AC090844.1-201ENST00000422019 156 ntBASIC2.01□□□□□ -2.09
USHBP1Q8N6Y0 RN7SL274P-201ENST00000492268 272 ntBASIC2.01□□□□□ -2.09
USHBP1Q8N6Y0 SNORD67.1-201ENST00000516618 108 ntBASIC2.01□□□□□ -2.09
USHBP1Q8N6Y0 Y_RNA.705-201ENST00000516862 110 ntBASIC2.01□□□□□ -2.09
USHBP1Q8N6Y0 RNU1-92P-201ENST00000517017 135 ntBASIC2.01□□□□□ -2.09
USHBP1Q8N6Y0 AC024614.2-201ENST00000577584 372 ntBASIC2.01□□□□□ -2.09
USHBP1Q8N6Y0 MIR4421-201ENST00000578133 69 ntBASIC2.01□□□□□ -2.09
USHBP1Q8N6Y0 AL357312.1-201ENST00000603879 298 ntBASIC2.01□□□□□ -2.09
USHBP1Q8N6Y0 SNORD114-10-201ENST00000363409 72 ntBASIC2□□□□□ -2.09
USHBP1Q8N6Y0 RNU6-439P-201ENST00000384188 106 ntBASIC2□□□□□ -2.09
USHBP1Q8N6Y0 RNU6-1237P-201ENST00000384777 107 ntBASIC2□□□□□ -2.09
USHBP1Q8N6Y0 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC2□□□□□ -2.09
USHBP1Q8N6Y0 RNU6-447P-201ENST00000410293 104 ntBASIC2□□□□□ -2.09
USHBP1Q8N6Y0 RNU6-1118P-201ENST00000410382 104 ntBASIC2□□□□□ -2.09
USHBP1Q8N6Y0 RNU6-1076P-201ENST00000410397 104 ntBASIC2□□□□□ -2.09
USHBP1Q8N6Y0 RNU6-355P-201ENST00000410427 104 ntBASIC2□□□□□ -2.09
USHBP1Q8N6Y0 RNU6-791P-201ENST00000410467 104 ntBASIC2□□□□□ -2.09
USHBP1Q8N6Y0 RNU6-705P-201ENST00000410601 104 ntBASIC2□□□□□ -2.09
USHBP1Q8N6Y0 RNU6-1100P-201ENST00000410691 104 ntBASIC2□□□□□ -2.09
USHBP1Q8N6Y0 RNU2-40P-201ENST00000410833 196 ntBASIC2□□□□□ -2.09
USHBP1Q8N6Y0 RNU6-860P-201ENST00000410860 104 ntBASIC2□□□□□ -2.09
USHBP1Q8N6Y0 RNU6-1217P-201ENST00000411276 104 ntBASIC2□□□□□ -2.09
USHBP1Q8N6Y0 RNU6-785P-201ENST00000411324 104 ntBASIC2□□□□□ -2.09
USHBP1Q8N6Y0 AL354695.1-201ENST00000427935 228 ntBASIC2□□□□□ -2.09
USHBP1Q8N6Y0 UBL5P1-201ENST00000507979 193 ntBASIC2□□□□□ -2.09
USHBP1Q8N6Y0 RNU6-162P-201ENST00000516228 103 ntBASIC2□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 337.6 ms