Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 Y_RNA.564-201ENST00000384708 106 ntBASIC-0.94□□□□□ -2.56
CHD9Q3L8U1 RNU6-1203P-201ENST00000410703 110 ntBASIC-0.94□□□□□ -2.56
CHD9Q3L8U1 SNORD63B-201ENST00000411005 70 ntBASIC-0.94□□□□□ -2.56
CHD9Q3L8U1 AL160004.2-201ENST00000432935 350 ntBASIC-0.94□□□□□ -2.56
CHD9Q3L8U1 CCDC34P1-201ENST00000507441 517 ntBASIC-0.94□□□□□ -2.56
CHD9Q3L8U1 UBE2V2P2-201ENST00000587677 504 ntBASIC-0.94□□□□□ -2.56
CHD9Q3L8U1 AC145423.2-201ENST00000610631 239 ntBASIC-0.94□□□□□ -2.56
CHD9Q3L8U1 AC013791.1-201ENST00000616619 62 ntBASIC-0.94□□□□□ -2.56
CHD9Q3L8U1 Y_RNA.77-201ENST00000362962 107 ntBASIC-0.94□□□□□ -2.56
CHD9Q3L8U1 RNU6-1306P-201ENST00000365219 99 ntBASIC-0.94□□□□□ -2.56
CHD9Q3L8U1 AC009480.1-201ENST00000402410 412 ntTSL 3 BASIC-0.94□□□□□ -2.56
CHD9Q3L8U1 MIR4460-201ENST00000577862 86 ntBASIC-0.94□□□□□ -2.56
CHD9Q3L8U1 RNA5SP403-201ENST00000363598 108 ntBASIC-0.94□□□□□ -2.56
CHD9Q3L8U1 Y_RNA.331-201ENST00000365267 102 ntBASIC-0.94□□□□□ -2.56
CHD9Q3L8U1 RNU6-728P-201ENST00000365375 104 ntBASIC-0.94□□□□□ -2.56
CHD9Q3L8U1 RNU6-20P-201ENST00000384106 107 ntBASIC-0.94□□□□□ -2.56
CHD9Q3L8U1 RNU6-155P-201ENST00000516347 100 ntBASIC-0.94□□□□□ -2.56
CHD9Q3L8U1 MIR4662B-201ENST00000579498 81 ntBASIC-0.94□□□□□ -2.56
CHD9Q3L8U1 AC097639.2-201ENST00000603159 172 ntBASIC-0.94□□□□□ -2.56
CHD9Q3L8U1 RNU6-89P-201ENST00000606519 100 ntBASIC-0.94□□□□□ -2.56
CHD9Q3L8U1 MIR8068-201ENST00000618032 68 ntBASIC-0.94□□□□□ -2.56
CHD9Q3L8U1 U4.1-201ENST00000620349 87 ntBASIC-0.94□□□□□ -2.56
CHD9Q3L8U1 AC124864.2-201ENST00000624736 186 ntBASIC-0.94□□□□□ -2.56
CHD9Q3L8U1 RNU6-484P-201ENST00000384016 107 ntBASIC-0.95□□□□□ -2.56
CHD9Q3L8U1 RNU2-66P-201ENST00000410650 161 ntBASIC-0.95□□□□□ -2.56
CHD9Q3L8U1 MTND2P22-201ENST00000444325 1033 ntBASIC-0.95□□□□□ -2.56
CHD9Q3L8U1 RNU7-45P-201ENST00000459460 63 ntBASIC-0.95□□□□□ -2.56
CHD9Q3L8U1 PLSCR5-AS1-201ENST00000473817 450 ntTSL 3 BASIC-0.95□□□□□ -2.56
CHD9Q3L8U1 Y_RNA.658-201ENST00000515990 97 ntBASIC-0.95□□□□□ -2.56
CHD9Q3L8U1 RNU6-412P-201ENST00000516434 106 ntBASIC-0.95□□□□□ -2.56
CHD9Q3L8U1 RNU7-70P-201ENST00000516941 66 ntBASIC-0.95□□□□□ -2.56
CHD9Q3L8U1 MIR466-201ENST00000580653 84 ntBASIC-0.95□□□□□ -2.56
CHD9Q3L8U1 RNU6-973P-201ENST00000364690 107 ntBASIC-0.95□□□□□ -2.56
CHD9Q3L8U1 RNU6-1201P-201ENST00000384227 107 ntBASIC-0.95□□□□□ -2.56
CHD9Q3L8U1 MIR527-201ENST00000385244 85 ntBASIC-0.95□□□□□ -2.56
CHD9Q3L8U1 RNU6-1068P-201ENST00000410958 103 ntBASIC-0.95□□□□□ -2.56
CHD9Q3L8U1 RNU6-1016P-201ENST00000516689 94 ntBASIC-0.95□□□□□ -2.56
CHD9Q3L8U1 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC-0.95□□□□□ -2.56
CHD9Q3L8U1 ZNF519P2-201ENST00000557032 169 ntBASIC-0.95□□□□□ -2.56
CHD9Q3L8U1 AC141846.1-201ENST00000568348 142 ntBASIC-0.95□□□□□ -2.56
CHD9Q3L8U1 Y_RNA.91-201ENST00000363042 107 ntBASIC-0.96□□□□□ -2.56
CHD9Q3L8U1 RNU6-842P-201ENST00000384269 107 ntBASIC-0.96□□□□□ -2.56
CHD9Q3L8U1 RNU6-273P-201ENST00000516937 96 ntBASIC-0.96□□□□□ -2.56
CHD9Q3L8U1 Y_RNA.169-201ENST00000363745 96 ntBASIC-0.96□□□□□ -2.56
CHD9Q3L8U1 SNORD114-17-201ENST00000364699 75 ntBASIC-0.96□□□□□ -2.56
CHD9Q3L8U1 Y_RNA.353-201ENST00000365440 108 ntBASIC-0.96□□□□□ -2.56
CHD9Q3L8U1 RNU6-38P-201ENST00000384085 107 ntBASIC-0.96□□□□□ -2.56
CHD9Q3L8U1 SNORA72.4-201ENST00000384174 132 ntBASIC-0.96□□□□□ -2.56
CHD9Q3L8U1 SNORD63-201ENST00000384262 68 ntBASIC-0.96□□□□□ -2.56
CHD9Q3L8U1 AL590004.1-201ENST00000405321 300 ntBASIC-0.96□□□□□ -2.56
CHD9Q3L8U1 AL161932.1-201ENST00000437408 146 ntBASIC-0.96□□□□□ -2.56
CHD9Q3L8U1 AC055872.1-201ENST00000570978 278 ntBASIC-0.96□□□□□ -2.56
CHD9Q3L8U1 Y_RNA.23-201ENST00000362496 106 ntBASIC-0.97□□□□□ -2.56
CHD9Q3L8U1 RNU6-801P-201ENST00000364087 105 ntBASIC-0.97□□□□□ -2.56
CHD9Q3L8U1 SNORD115-20-201ENST00000365099 82 ntBASIC-0.97□□□□□ -2.56
CHD9Q3L8U1 RNU6-1050P-201ENST00000410388 107 ntBASIC-0.97□□□□□ -2.56
CHD9Q3L8U1 RNU6-383P-201ENST00000410864 94 ntBASIC-0.97□□□□□ -2.56
CHD9Q3L8U1 AC108059.2-201ENST00000434626 151 ntBASIC-0.97□□□□□ -2.56
CHD9Q3L8U1 MIR2053-201ENST00000459295 91 ntBASIC-0.97□□□□□ -2.56
CHD9Q3L8U1 AC133104.2-201ENST00000615272 193 ntBASIC-0.97□□□□□ -2.56
CHD9Q3L8U1 Z69908.1-201ENST00000622603 247 ntBASIC-0.97□□□□□ -2.56
CHD9Q3L8U1 RNU6-879P-201ENST00000364328 108 ntBASIC-0.97□□□□□ -2.56
CHD9Q3L8U1 RNU6-1163P-201ENST00000364516 107 ntBASIC-0.97□□□□□ -2.56
CHD9Q3L8U1 MIR519E-201ENST00000385075 84 ntBASIC-0.97□□□□□ -2.56
CHD9Q3L8U1 RNU6-576P-201ENST00000390854 102 ntBASIC-0.97□□□□□ -2.56
CHD9Q3L8U1 MIR548H3-201ENST00000408771 118 ntBASIC-0.97□□□□□ -2.56
CHD9Q3L8U1 AF228730.4-201ENST00000421457 183 ntBASIC-0.97□□□□□ -2.56
CHD9Q3L8U1 MTND4P28-201ENST00000426217 387 ntBASIC-0.97□□□□□ -2.56
CHD9Q3L8U1 MIR4528-201ENST00000577763 90 ntBASIC-0.97□□□□□ -2.56
CHD9Q3L8U1 MIR3920-201ENST00000581751 86 ntBASIC-0.97□□□□□ -2.56
CHD9Q3L8U1 AC021443.1-201ENST00000604478 211 ntBASIC-0.97□□□□□ -2.56
CHD9Q3L8U1 RNU6-208P-201ENST00000362431 107 ntBASIC-0.98□□□□□ -2.57
CHD9Q3L8U1 SNORA22.1-201ENST00000362701 134 ntBASIC-0.98□□□□□ -2.57
CHD9Q3L8U1 Y_RNA.357-201ENST00000365487 109 ntBASIC-0.98□□□□□ -2.57
CHD9Q3L8U1 MIR147A-201ENST00000385079 72 ntBASIC-0.98□□□□□ -2.57
CHD9Q3L8U1 RNU6-1158P-201ENST00000391167 107 ntBASIC-0.98□□□□□ -2.57
CHD9Q3L8U1 RNU7-48P-201ENST00000458875 63 ntBASIC-0.98□□□□□ -2.57
CHD9Q3L8U1 AC068137.3-201ENST00000639191 341 ntBASIC-0.98□□□□□ -2.57
CHD9Q3L8U1 RNU6-874P-201ENST00000362390 105 ntBASIC-0.98□□□□□ -2.57
CHD9Q3L8U1 RNU6-230P-201ENST00000362457 104 ntBASIC-0.98□□□□□ -2.57
CHD9Q3L8U1 RNU6-144P-201ENST00000383951 107 ntBASIC-0.98□□□□□ -2.57
CHD9Q3L8U1 RNU6-831P-201ENST00000384548 107 ntBASIC-0.98□□□□□ -2.57
CHD9Q3L8U1 RPS29P25-201ENST00000481709 171 ntBASIC-0.98□□□□□ -2.57
CHD9Q3L8U1 MTATP6P24-201ENST00000576835 677 ntBASIC-0.98□□□□□ -2.57
CHD9Q3L8U1 AC005014.3-201ENST00000605985 190 ntBASIC-0.98□□□□□ -2.57
CHD9Q3L8U1 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC-0.98□□□□□ -2.57
CHD9Q3L8U1 TPTEP1-208ENST00000636884 213 ntBASIC-0.98□□□□□ -2.57
CHD9Q3L8U1 FGF7P2-201ENST00000332473 296 ntBASIC-0.98□□□□□ -2.57
CHD9Q3L8U1 Y_RNA.171-201ENST00000363760 102 ntBASIC-0.98□□□□□ -2.57
CHD9Q3L8U1 AL603910.2-201ENST00000407268 136 ntBASIC-0.98□□□□□ -2.57
CHD9Q3L8U1 MTND1P34-201ENST00000438556 671 ntBASIC-0.98□□□□□ -2.57
CHD9Q3L8U1 AC097510.1-201ENST00000510945 133 ntBASIC-0.98□□□□□ -2.57
CHD9Q3L8U1 SERF1AP1-201ENST00000514575 187 ntBASIC-0.98□□□□□ -2.57
CHD9Q3L8U1 RNU6-408P-201ENST00000515910 100 ntBASIC-0.98□□□□□ -2.57
CHD9Q3L8U1 SNORD77.4-201ENST00000516158 81 ntBASIC-0.98□□□□□ -2.57
CHD9Q3L8U1 NBR2-204ENST00000587322 63 ntBASIC-0.98□□□□□ -2.57
CHD9Q3L8U1 Y_RNA.39-201ENST00000362620 98 ntBASIC-0.99□□□□□ -2.57
CHD9Q3L8U1 Y_RNA.440-201ENST00000384120 114 ntBASIC-0.99□□□□□ -2.57
CHD9Q3L8U1 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC-0.99□□□□□ -2.57
CHD9Q3L8U1 AP005530.1-201ENST00000572608 567 ntTSL 3 BASIC-0.99□□□□□ -2.57
Retrieved 100 of 98,524 protein–RNA pairs in 190.7 ms