Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 RNU6-924P-201ENST00000362926 108 ntBASIC-2.27□□□□□ -2.77
CUX1P39880 AL365203.2-201ENST00000423444 196 ntBASIC-2.27□□□□□ -2.77
CUX1P39880 AC091951.2-201ENST00000500762 203 ntBASIC-2.27□□□□□ -2.77
CUX1P39880 SNORD67.1-201ENST00000516618 108 ntBASIC-2.27□□□□□ -2.77
CUX1P39880 RNU6-126P-201ENST00000516685 103 ntBASIC-2.27□□□□□ -2.77
CUX1P39880 AC124303.1-201ENST00000605703 360 ntBASIC-2.27□□□□□ -2.77
CUX1P39880 AL158211.2-201ENST00000607282 395 ntBASIC-2.27□□□□□ -2.77
CUX1P39880 RNU6-254P-201ENST00000363377 107 ntBASIC-2.28□□□□□ -2.77
CUX1P39880 Y_RNA.461-201ENST00000384263 103 ntBASIC-2.28□□□□□ -2.77
CUX1P39880 RNU7-137P-201ENST00000516788 62 ntBASIC-2.28□□□□□ -2.77
CUX1P39880 AL589826.1-201ENST00000340697 249 ntBASIC-2.29□□□□□ -2.78
CUX1P39880 RNU6-79P-201ENST00000362511 107 ntBASIC-2.29□□□□□ -2.78
CUX1P39880 RNU5F-7P-201ENST00000363696 115 ntBASIC-2.29□□□□□ -2.78
CUX1P39880 RNU6-1163P-201ENST00000364516 107 ntBASIC-2.29□□□□□ -2.78
CUX1P39880 AC024067.1-201ENST00000426199 223 ntBASIC-2.29□□□□□ -2.78
CUX1P39880 AL033528.1-201ENST00000453780 140 ntBASIC-2.29□□□□□ -2.78
CUX1P39880 RNU7-141P-201ENST00000459304 62 ntBASIC-2.29□□□□□ -2.78
CUX1P39880 AC024933.1-201ENST00000608472 348 ntBASIC-2.29□□□□□ -2.78
CUX1P39880 RNU6-1301P-201ENST00000362724 104 ntBASIC-2.3□□□□□ -2.78
CUX1P39880 RNU6-144P-201ENST00000383951 107 ntBASIC-2.3□□□□□ -2.78
CUX1P39880 RNU6-38P-201ENST00000384085 107 ntBASIC-2.3□□□□□ -2.78
CUX1P39880 RPL35AP4-201ENST00000412007 102 ntBASIC-2.3□□□□□ -2.78
CUX1P39880 RNU6-1270P-201ENST00000517128 108 ntBASIC-2.3□□□□□ -2.78
CUX1P39880 RNU1-54P-201ENST00000517181 120 ntBASIC-2.3□□□□□ -2.78
CUX1P39880 AL118558.2-201ENST00000556294 238 ntBASIC-2.3□□□□□ -2.78
CUX1P39880 AP001542.1-201ENST00000591314 200 ntBASIC-2.3□□□□□ -2.78
CUX1P39880 RNU4-68P-201ENST00000364314 141 ntBASIC-2.31□□□□□ -2.78
CUX1P39880 RNU6-1257P-201ENST00000384625 110 ntBASIC-2.31□□□□□ -2.78
CUX1P39880 RNU4-88P-201ENST00000411220 86 ntBASIC-2.31□□□□□ -2.78
CUX1P39880 AC018880.2-201ENST00000414265 201 ntBASIC-2.31□□□□□ -2.78
CUX1P39880 MIR2355-201ENST00000517199 87 ntBASIC-2.31□□□□□ -2.78
CUX1P39880 AP002795.1-201ENST00000534879 84 ntBASIC-2.31□□□□□ -2.78
CUX1P39880 MIR548O2-201ENST00000616090 70 ntBASIC-2.31□□□□□ -2.78
CUX1P39880 Y_RNA.91-201ENST00000363042 107 ntBASIC-2.32□□□□□ -2.78
CUX1P39880 Y_RNA.207-201ENST00000364142 106 ntBASIC-2.32□□□□□ -2.78
CUX1P39880 Y_RNA.596-201ENST00000410462 109 ntBASIC-2.32□□□□□ -2.78
CUX1P39880 AL353691.2-201ENST00000443795 59 ntBASIC-2.32□□□□□ -2.78
CUX1P39880 RNU6-397P-201ENST00000516226 104 ntBASIC-2.32□□□□□ -2.78
CUX1P39880 hsa-mir-550a-2.1-201ENST00000637473 97 ntBASIC-2.32□□□□□ -2.78
CUX1P39880 RNU6-170P-201ENST00000362832 104 ntBASIC-2.32□□□□□ -2.78
CUX1P39880 Y_RNA.72-201ENST00000362894 103 ntBASIC-2.32□□□□□ -2.78
CUX1P39880 RNU6-522P-201ENST00000364497 107 ntBASIC-2.32□□□□□ -2.78
CUX1P39880 RNU6-20P-201ENST00000384106 107 ntBASIC-2.32□□□□□ -2.78
CUX1P39880 RNU6-80P-201ENST00000384195 107 ntBASIC-2.32□□□□□ -2.78
CUX1P39880 RNU6-95P-201ENST00000384697 107 ntBASIC-2.32□□□□□ -2.78
CUX1P39880 RNU6-21P-201ENST00000384710 107 ntBASIC-2.32□□□□□ -2.78
CUX1P39880 Y_RNA.630-201ENST00000411370 108 ntBASIC-2.32□□□□□ -2.78
CUX1P39880 RNU7-63P-201ENST00000459054 62 ntBASIC-2.32□□□□□ -2.78
CUX1P39880 SNORD77.4-201ENST00000516158 81 ntBASIC-2.32□□□□□ -2.78
CUX1P39880 Y_RNA.778-201ENST00000620203 90 ntBASIC-2.32□□□□□ -2.78
CUX1P39880 RNU6-801P-201ENST00000364087 105 ntBASIC-2.33□□□□□ -2.78
CUX1P39880 RNU6-695P-201ENST00000391157 104 ntBASIC-2.33□□□□□ -2.78
CUX1P39880 SNORD115-47-201ENST00000391226 86 ntBASIC-2.33□□□□□ -2.78
CUX1P39880 Y_RNA.591-201ENST00000410228 104 ntBASIC-2.33□□□□□ -2.78
CUX1P39880 Y_RNA.618-201ENST00000410949 107 ntBASIC-2.33□□□□□ -2.78
CUX1P39880 LINC00363-201ENST00000443228 210 ntTSL 5 BASIC-2.33□□□□□ -2.78
CUX1P39880 AC098826.2-201ENST00000452011 651 ntBASIC-2.33□□□□□ -2.78
CUX1P39880 RNU6-1333P-201ENST00000516162 93 ntBASIC-2.33□□□□□ -2.78
CUX1P39880 RNU6-1006P-201ENST00000516998 103 ntBASIC-2.33□□□□□ -2.78
CUX1P39880 MIR548AM-201ENST00000584298 74 ntBASIC-2.33□□□□□ -2.78
CUX1P39880 AP001506.1-201ENST00000615444 211 ntBASIC-2.33□□□□□ -2.78
CUX1P39880 RNU6-54P-201ENST00000365563 107 ntBASIC-2.34□□□□□ -2.78
CUX1P39880 SNORA72.4-201ENST00000384174 132 ntBASIC-2.34□□□□□ -2.78
CUX1P39880 AL590004.1-201ENST00000405321 300 ntBASIC-2.34□□□□□ -2.78
CUX1P39880 RNU2-66P-201ENST00000410650 161 ntBASIC-2.34□□□□□ -2.78
CUX1P39880 TARS-215ENST00000626210 201 ntTSL 5 BASIC-2.34□□□□□ -2.78
CUX1P39880 Y_RNA.171-201ENST00000363760 102 ntBASIC-2.35□□□□□ -2.79
CUX1P39880 Y_RNA.239-201ENST00000364444 113 ntBASIC-2.35□□□□□ -2.79
CUX1P39880 Y_RNA.515-201ENST00000384535 112 ntBASIC-2.35□□□□□ -2.79
CUX1P39880 Y_RNA.525-201ENST00000384570 113 ntBASIC-2.35□□□□□ -2.79
CUX1P39880 RNU6-1321P-201ENST00000390905 107 ntBASIC-2.35□□□□□ -2.79
CUX1P39880 MTATP6P19-201ENST00000413797 659 ntBASIC-2.35□□□□□ -2.79
CUX1P39880 AC108081.1-201ENST00000604358 221 ntBASIC-2.35□□□□□ -2.79
CUX1P39880 AL021707.8-201ENST00000609428 183 ntBASIC-2.35□□□□□ -2.79
CUX1P39880 Evf-2_5p.1-201ENST00000614213 142 ntBASIC-2.35□□□□□ -2.79
CUX1P39880 WT1-AS_8.1-201ENST00000615200 275 ntBASIC-2.35□□□□□ -2.79
CUX1P39880 FGF7P2-201ENST00000332473 296 ntBASIC-2.36□□□□□ -2.79
CUX1P39880 Y_RNA.66-201ENST00000362862 102 ntBASIC-2.36□□□□□ -2.79
CUX1P39880 Y_RNA.353-201ENST00000365440 108 ntBASIC-2.36□□□□□ -2.79
CUX1P39880 AC009480.1-201ENST00000402410 412 ntTSL 3 BASIC-2.36□□□□□ -2.79
CUX1P39880 PLSCR5-AS1-201ENST00000473817 450 ntTSL 3 BASIC-2.36□□□□□ -2.79
CUX1P39880 RNU6-500P-201ENST00000362349 107 ntBASIC-2.37□□□□□ -2.79
CUX1P39880 Y_RNA.98-201ENST00000363109 102 ntBASIC-2.37□□□□□ -2.79
CUX1P39880 RNU6-1306P-201ENST00000365219 99 ntBASIC-2.37□□□□□ -2.79
CUX1P39880 Y_RNA.470-201ENST00000384307 117 ntBASIC-2.37□□□□□ -2.79
CUX1P39880 AL162734.1-201ENST00000432858 157 ntTSL 5 BASIC-2.37□□□□□ -2.79
CUX1P39880 RNU6-762P-201ENST00000517107 102 ntBASIC-2.37□□□□□ -2.79
CUX1P39880 MIR5701-3-201ENST00000578890 82 ntBASIC-2.37□□□□□ -2.79
CUX1P39880 MIR5701-1-201ENST00000585138 82 ntBASIC-2.37□□□□□ -2.79
CUX1P39880 AC006504.6-201ENST00000590142 199 ntBASIC-2.37□□□□□ -2.79
CUX1P39880 MIR5701-2-201ENST00000615634 82 ntBASIC-2.37□□□□□ -2.79
CUX1P39880 AC099654.14-201ENST00000638599 341 ntBASIC-2.37□□□□□ -2.79
CUX1P39880 FGF7P4-201ENST00000509595 295 ntBASIC-2.37□□□□□ -2.79
CUX1P39880 MIR4490-201ENST00000582647 84 ntBASIC-2.37□□□□□ -2.79
CUX1P39880 AC005357.1-201ENST00000588399 301 ntBASIC-2.37□□□□□ -2.79
CUX1P39880 Y_RNA.159-201ENST00000363674 87 ntBASIC-2.38□□□□□ -2.79
CUX1P39880 Y_RNA.342-201ENST00000365352 113 ntBASIC-2.38□□□□□ -2.79
CUX1P39880 RNU6-1242P-201ENST00000391052 103 ntBASIC-2.38□□□□□ -2.79
CUX1P39880 ELOCP20-201ENST00000422460 345 ntBASIC-2.38□□□□□ -2.79
CUX1P39880 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC-2.38□□□□□ -2.79
Retrieved 100 of 98,524 protein–RNA pairs in 187 ms