Protein–RNA interactions for Protein: P34896

SHMT1, Serine hydroxymethyltransferase, cytosolic, humanhuman

Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1P34896 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC0.89□□□□□ -2.27
SHMT1P34896 MIR548X2-201ENST00000579776 100 ntBASIC0.89□□□□□ -2.27
SHMT1P34896 AC010332.2-201ENST00000613083 1904 ntBASIC0.89□□□□□ -2.27
SHMT1P34896 RNY1P11-201ENST00000363759 113 ntBASIC0.88□□□□□ -2.27
SHMT1P34896 RNU7-197P-201ENST00000458836 62 ntBASIC0.88□□□□□ -2.27
SHMT1P34896 MIR4771-2-201ENST00000577758 74 ntBASIC0.88□□□□□ -2.27
SHMT1P34896 Y_RNA.757-201ENST00000578934 114 ntBASIC0.88□□□□□ -2.27
SHMT1P34896 MIR4771-1-201ENST00000582617 74 ntBASIC0.88□□□□□ -2.27
SHMT1P34896 RNU1-36P-201ENST00000365130 165 ntBASIC0.87□□□□□ -2.27
SHMT1P34896 Y_RNA.686-201ENST00000516548 134 ntBASIC0.87□□□□□ -2.27
SHMT1P34896 RNU6-1212P-201ENST00000517023 104 ntBASIC0.87□□□□□ -2.27
SHMT1P34896 AC133485.4-201ENST00000561835 220 ntBASIC0.87□□□□□ -2.27
SHMT1P34896 AC138907.4-201ENST00000570107 226 ntBASIC0.87□□□□□ -2.27
SHMT1P34896 MIR30D-201ENST00000362283 70 ntBASIC0.86□□□□□ -2.27
SHMT1P34896 RNU6-309P-201ENST00000364573 106 ntBASIC0.86□□□□□ -2.27
SHMT1P34896 RNU6-1237P-201ENST00000384777 107 ntBASIC0.86□□□□□ -2.27
SHMT1P34896 MIR598-201ENST00000384868 97 ntBASIC0.86□□□□□ -2.27
SHMT1P34896 RNU7-113P-201ENST00000459273 62 ntBASIC0.86□□□□□ -2.27
SHMT1P34896 AC113410.1-201ENST00000505029 247 ntBASIC0.86□□□□□ -2.27
SHMT1P34896 RNU6-240P-201ENST00000516098 97 ntBASIC0.86□□□□□ -2.27
SHMT1P34896 RNU6-977P-201ENST00000516411 103 ntBASIC0.86□□□□□ -2.27
SHMT1P34896 MIR4305-201ENST00000583252 102 ntBASIC0.86□□□□□ -2.27
SHMT1P34896 uc_338.6-201ENST00000613544 171 ntBASIC0.86□□□□□ -2.27
SHMT1P34896 AL662814.1-201ENST00000617364 121 ntBASIC0.86□□□□□ -2.27
SHMT1P34896 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC0.86□□□□□ -2.27
SHMT1P34896 MIR6835-201ENST00000621552 64 ntBASIC0.86□□□□□ -2.27
SHMT1P34896 AC021753.1-201ENST00000635724 168 ntBASIC0.86□□□□□ -2.27
SHMT1P34896 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC0.86□□□□□ -2.27
SHMT1P34896 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.85□□□□□ -2.27
SHMT1P34896 Y_RNA.215-201ENST00000364204 112 ntBASIC0.85□□□□□ -2.27
SHMT1P34896 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC0.85□□□□□ -2.27
SHMT1P34896 Y_RNA.651-201ENST00000459380 103 ntBASIC0.85□□□□□ -2.27
SHMT1P34896 SNORA25.12-201ENST00000516202 82 ntBASIC0.85□□□□□ -2.27
SHMT1P34896 Y_RNA.692-201ENST00000516627 105 ntBASIC0.85□□□□□ -2.27
SHMT1P34896 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.84□□□□□ -2.27
SHMT1P34896 AC023934.1-201ENST00000574529 2389 ntBASIC0.84□□□□□ -2.27
SHMT1P34896 RNU6-369P-201ENST00000362515 102 ntBASIC0.84□□□□□ -2.27
SHMT1P34896 SNORD115-2-201ENST00000362842 82 ntBASIC0.84□□□□□ -2.27
SHMT1P34896 Y_RNA.171-201ENST00000363760 102 ntBASIC0.84□□□□□ -2.27
SHMT1P34896 SNORD115-20-201ENST00000365099 82 ntBASIC0.84□□□□□ -2.27
SHMT1P34896 MIR508-201ENST00000384857 115 ntBASIC0.84□□□□□ -2.27
SHMT1P34896 SNORD105-201ENST00000386910 85 ntBASIC0.84□□□□□ -2.27
SHMT1P34896 RNU6-460P-201ENST00000391158 108 ntBASIC0.84□□□□□ -2.27
SHMT1P34896 RPL39P25-201ENST00000449384 154 ntBASIC0.84□□□□□ -2.27
SHMT1P34896 RNU6-1258P-201ENST00000516911 111 ntBASIC0.84□□□□□ -2.27
SHMT1P34896 MTND5P41-201ENST00000517498 206 ntBASIC0.84□□□□□ -2.27
SHMT1P34896 MIR4676-201ENST00000583078 72 ntBASIC0.84□□□□□ -2.27
SHMT1P34896 AC021443.1-201ENST00000604478 211 ntBASIC0.84□□□□□ -2.27
SHMT1P34896 AP001340.1-201ENST00000624405 217 ntBASIC0.84□□□□□ -2.27
SHMT1P34896 MIR6866-201ENST00000638146 69 ntBASIC0.84□□□□□ -2.27
SHMT1P34896 RNU6-915P-201ENST00000364943 103 ntBASIC0.83□□□□□ -2.28
SHMT1P34896 RNU6-209P-201ENST00000384118 107 ntBASIC0.83□□□□□ -2.28
SHMT1P34896 SNORA18-201ENST00000384416 132 ntBASIC0.83□□□□□ -2.28
SHMT1P34896 RNU6-342P-201ENST00000384521 104 ntBASIC0.83□□□□□ -2.28
SHMT1P34896 MIR608-201ENST00000384820 100 ntBASIC0.83□□□□□ -2.28
SHMT1P34896 MIR1257-201ENST00000408490 117 ntBASIC0.83□□□□□ -2.28
SHMT1P34896 RNU7-185P-201ENST00000459215 60 ntBASIC0.83□□□□□ -2.28
SHMT1P34896 AP001328.1-201ENST00000528550 176 ntBASIC0.83□□□□□ -2.28
SHMT1P34896 AC133485.1-201ENST00000567176 124 ntBASIC0.83□□□□□ -2.28
SHMT1P34896 AC141846.1-201ENST00000568348 142 ntBASIC0.83□□□□□ -2.28
SHMT1P34896 AC138907.6-201ENST00000568401 126 ntBASIC0.83□□□□□ -2.28
SHMT1P34896 Y_RNA.170-201ENST00000363746 110 ntBASIC0.82□□□□□ -2.28
SHMT1P34896 Y_RNA.488-201ENST00000384403 102 ntBASIC0.82□□□□□ -2.28
SHMT1P34896 Y_RNA.531-201ENST00000384589 121 ntBASIC0.82□□□□□ -2.28
SHMT1P34896 MIR520F-201ENST00000384824 87 ntBASIC0.82□□□□□ -2.28
SHMT1P34896 MIR125B2-201ENST00000385128 89 ntBASIC0.82□□□□□ -2.28
SHMT1P34896 MIR146A-201ENST00000385201 99 ntBASIC0.82□□□□□ -2.28
SHMT1P34896 MIR938-201ENST00000401216 83 ntBASIC0.82□□□□□ -2.28
SHMT1P34896 RNU6ATAC42P-201ENST00000408637 95 ntBASIC0.82□□□□□ -2.28
SHMT1P34896 RNU6-1086P-201ENST00000410930 100 ntBASIC0.82□□□□□ -2.28
SHMT1P34896 RNU7-164P-201ENST00000459221 62 ntBASIC0.82□□□□□ -2.28
SHMT1P34896 RNU5E-3P-201ENST00000515913 68 ntBASIC0.82□□□□□ -2.28
SHMT1P34896 RNU7-200P-201ENST00000516105 62 ntBASIC0.82□□□□□ -2.28
SHMT1P34896 ACA64.5-201ENST00000516207 127 ntBASIC0.82□□□□□ -2.28
SHMT1P34896 AC004812.1-201ENST00000540773 146 ntBASIC0.82□□□□□ -2.28
SHMT1P34896 MIR3121-201ENST00000579680 77 ntBASIC0.82□□□□□ -2.28
SHMT1P34896 MIR4804-201ENST00000581683 73 ntBASIC0.82□□□□□ -2.28
SHMT1P34896 MIR4653-201ENST00000585107 83 ntBASIC0.82□□□□□ -2.28
SHMT1P34896 AL353765.1-201ENST00000605514 183 ntBASIC0.82□□□□□ -2.28
SHMT1P34896 AC020891.4-201ENST00000605745 93 ntBASIC0.82□□□□□ -2.28
SHMT1P34896 RNU6-508P-201ENST00000363231 103 ntBASIC0.81□□□□□ -2.28
SHMT1P34896 RNU6-1335P-201ENST00000365426 107 ntBASIC0.81□□□□□ -2.28
SHMT1P34896 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.81□□□□□ -2.28
SHMT1P34896 MIR569-201ENST00000385228 96 ntBASIC0.81□□□□□ -2.28
SHMT1P34896 SNORD99-201ENST00000408612 74 ntBASIC0.81□□□□□ -2.28
SHMT1P34896 MIR548I1-201ENST00000408810 149 ntBASIC0.81□□□□□ -2.28
SHMT1P34896 AL512326.2-201ENST00000426359 151 ntBASIC0.81□□□□□ -2.28
SHMT1P34896 AC015818.7-201ENST00000428754 109 ntBASIC0.81□□□□□ -2.28
SHMT1P34896 AC087499.7-201ENST00000441958 109 ntBASIC0.81□□□□□ -2.28
SHMT1P34896 RNU2-35P-201ENST00000516446 142 ntBASIC0.81□□□□□ -2.28
SHMT1P34896 RNA5SP33-201ENST00000516687 98 ntBASIC0.81□□□□□ -2.28
SHMT1P34896 5S_rRNA.15-201ENST00000611169 127 ntBASIC0.81□□□□□ -2.28
SHMT1P34896 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC0.8□□□□□ -2.28
SHMT1P34896 Y_RNA.420-201ENST00000384043 110 ntBASIC0.8□□□□□ -2.28
SHMT1P34896 Y_RNA.470-201ENST00000384307 117 ntBASIC0.8□□□□□ -2.28
SHMT1P34896 RNU6-364P-201ENST00000384387 107 ntBASIC0.8□□□□□ -2.28
SHMT1P34896 IGHVII-40-1-201ENST00000517316 58 ntBASIC0.8□□□□□ -2.28
SHMT1P34896 AC013244.2-201ENST00000603396 103 ntBASIC0.8□□□□□ -2.28
SHMT1P34896 AL137067.1-201ENST00000615933 120 ntBASIC0.8□□□□□ -2.28
SHMT1P34896 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.79□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 177.4 ms