Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 RNU4-10P-201ENST00000364383 140 ntBASIC-2.9□□□□□ -2.87
CCDC88BA6NC98 RNU5E-5P-201ENST00000365379 116 ntBASIC-2.9□□□□□ -2.87
CCDC88BA6NC98 RNU6-54P-201ENST00000365563 107 ntBASIC-2.9□□□□□ -2.87
CCDC88BA6NC98 MIR216B-201ENST00000390186 82 ntBASIC-2.9□□□□□ -2.87
CCDC88BA6NC98 Y_RNA.631-201ENST00000459607 101 ntBASIC-2.9□□□□□ -2.87
CCDC88BA6NC98 SNORA19.2-201ENST00000516013 114 ntBASIC-2.9□□□□□ -2.87
CCDC88BA6NC98 DLEU2_5.1-201ENST00000615567 84 ntBASIC-2.9□□□□□ -2.87
CCDC88BA6NC98 TARS-215ENST00000626210 201 ntTSL 5 BASIC-2.9□□□□□ -2.87
CCDC88BA6NC98 RNU6-595P-201ENST00000363944 107 ntBASIC-2.91□□□□□ -2.88
CCDC88BA6NC98 Y_RNA.364-201ENST00000365532 101 ntBASIC-2.91□□□□□ -2.88
CCDC88BA6NC98 Y_RNA.470-201ENST00000384307 117 ntBASIC-2.91□□□□□ -2.88
CCDC88BA6NC98 FGF7P4-201ENST00000509595 295 ntBASIC-2.91□□□□□ -2.88
CCDC88BA6NC98 AC019193.3-201ENST00000609144 554 ntBASIC-2.91□□□□□ -2.88
CCDC88BA6NC98 MIR516A2-201ENST00000384888 90 ntBASIC-2.92□□□□□ -2.88
CCDC88BA6NC98 MIR517A-201ENST00000385001 87 ntBASIC-2.92□□□□□ -2.88
CCDC88BA6NC98 MIR516A1-201ENST00000385033 90 ntBASIC-2.92□□□□□ -2.88
CCDC88BA6NC98 RNU6-1321P-201ENST00000390905 107 ntBASIC-2.92□□□□□ -2.88
CCDC88BA6NC98 Y_RNA.591-201ENST00000410228 104 ntBASIC-2.92□□□□□ -2.88
CCDC88BA6NC98 MTCO2P21-201ENST00000419780 677 ntBASIC-2.92□□□□□ -2.88
CCDC88BA6NC98 RNU6-1057P-201ENST00000517162 102 ntBASIC-2.92□□□□□ -2.88
CCDC88BA6NC98 MIR548AM-201ENST00000584298 74 ntBASIC-2.92□□□□□ -2.88
CCDC88BA6NC98 AC060780.3-201ENST00000589464 80 ntBASIC-2.92□□□□□ -2.88
CCDC88BA6NC98 AC108081.1-201ENST00000604358 221 ntBASIC-2.92□□□□□ -2.88
CCDC88BA6NC98 WT1-AS_8.1-201ENST00000615200 275 ntBASIC-2.92□□□□□ -2.88
CCDC88BA6NC98 Y_RNA.182-201ENST00000363880 111 ntBASIC-2.93□□□□□ -2.88
CCDC88BA6NC98 RNU6-82P-201ENST00000363970 107 ntBASIC-2.93□□□□□ -2.88
CCDC88BA6NC98 RNU6-841P-201ENST00000383872 107 ntBASIC-2.93□□□□□ -2.88
CCDC88BA6NC98 AC073415.1-201ENST00000449240 153 ntBASIC-2.93□□□□□ -2.88
CCDC88BA6NC98 RNU6-80P-201ENST00000384195 107 ntBASIC-2.94□□□□□ -2.88
CCDC88BA6NC98 RNU6-21P-201ENST00000384710 107 ntBASIC-2.94□□□□□ -2.88
CCDC88BA6NC98 AL160004.2-201ENST00000432935 350 ntBASIC-2.94□□□□□ -2.88
CCDC88BA6NC98 RNU7-141P-201ENST00000459304 62 ntBASIC-2.94□□□□□ -2.88
CCDC88BA6NC98 MIR4662B-201ENST00000579498 81 ntBASIC-2.94□□□□□ -2.88
CCDC88BA6NC98 U6.96-201ENST00000636425 70 ntBASIC-2.94□□□□□ -2.88
CCDC88BA6NC98 RNU5F-7P-201ENST00000363696 115 ntBASIC-2.95□□□□□ -2.88
CCDC88BA6NC98 SNORA72.4-201ENST00000384174 132 ntBASIC-2.95□□□□□ -2.88
CCDC88BA6NC98 RNU6-102P-201ENST00000384485 104 ntBASIC-2.95□□□□□ -2.88
CCDC88BA6NC98 RPL35AP4-201ENST00000412007 102 ntBASIC-2.95□□□□□ -2.88
CCDC88BA6NC98 AC011476.5-201ENST00000615594 130 ntBASIC-2.95□□□□□ -2.88
CCDC88BA6NC98 Y_RNA.76-201ENST00000362931 109 ntBASIC-2.96□□□□□ -2.88
CCDC88BA6NC98 Y_RNA.525-201ENST00000384570 113 ntBASIC-2.96□□□□□ -2.88
CCDC88BA6NC98 RNU4-88P-201ENST00000411220 86 ntBASIC-2.96□□□□□ -2.88
CCDC88BA6NC98 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC-2.96□□□□□ -2.88
CCDC88BA6NC98 AC098826.2-201ENST00000452011 651 ntBASIC-2.96□□□□□ -2.88
CCDC88BA6NC98 AC024933.1-201ENST00000608472 348 ntBASIC-2.96□□□□□ -2.88
CCDC88BA6NC98 RNU6-931P-201ENST00000363850 107 ntBASIC-2.96□□□□□ -2.88
CCDC88BA6NC98 AL161932.1-201ENST00000437408 146 ntBASIC-2.96□□□□□ -2.88
CCDC88BA6NC98 MTND1P34-201ENST00000438556 671 ntBASIC-2.96□□□□□ -2.88
CCDC88BA6NC98 MTND3P16-201ENST00000452205 344 ntBASIC-2.96□□□□□ -2.88
CCDC88BA6NC98 RNU7-113P-201ENST00000459273 62 ntBASIC-2.96□□□□□ -2.88
CCDC88BA6NC98 RNU7-70P-201ENST00000516941 66 ntBASIC-2.96□□□□□ -2.88
CCDC88BA6NC98 AP002963.1-201ENST00000530590 184 ntBASIC-2.96□□□□□ -2.88
CCDC88BA6NC98 AC009161.2-201ENST00000624626 138 ntBASIC-2.96□□□□□ -2.88
CCDC88BA6NC98 U6.100-201ENST00000636230 99 ntBASIC-2.96□□□□□ -2.88
CCDC88BA6NC98 Y_RNA.54-201ENST00000362766 105 ntBASIC-2.97□□□□□ -2.89
CCDC88BA6NC98 Y_RNA.98-201ENST00000363109 102 ntBASIC-2.97□□□□□ -2.89
CCDC88BA6NC98 RNU6-626P-201ENST00000363354 107 ntBASIC-2.97□□□□□ -2.89
CCDC88BA6NC98 Y_RNA.342-201ENST00000365352 113 ntBASIC-2.97□□□□□ -2.89
CCDC88BA6NC98 Y_RNA.378-201ENST00000365652 113 ntBASIC-2.97□□□□□ -2.89
CCDC88BA6NC98 RNU7-48P-201ENST00000458875 63 ntBASIC-2.97□□□□□ -2.89
CCDC88BA6NC98 AC113618.1-201ENST00000416747 285 ntBASIC-2.98□□□□□ -2.89
CCDC88BA6NC98 AC091951.2-201ENST00000500762 203 ntBASIC-2.98□□□□□ -2.89
CCDC88BA6NC98 MIR3682-201ENST00000581338 84 ntBASIC-2.98□□□□□ -2.89
CCDC88BA6NC98 TRDV1-202ENST00000621643 102 ntBASIC-2.98□□□□□ -2.89
CCDC88BA6NC98 MIR466-201ENST00000580653 84 ntBASIC-2.99□□□□□ -2.89
CCDC88BA6NC98 AC005357.1-201ENST00000588399 301 ntBASIC-2.99□□□□□ -2.89
CCDC88BA6NC98 RNU6-1094P-201ENST00000362416 104 ntBASIC-3□□□□□ -2.89
CCDC88BA6NC98 Y_RNA.72-201ENST00000362894 103 ntBASIC-3□□□□□ -2.89
CCDC88BA6NC98 RNY3P11-201ENST00000364153 102 ntBASIC-3□□□□□ -2.89
CCDC88BA6NC98 RNU6-1306P-201ENST00000365219 99 ntBASIC-3□□□□□ -2.89
CCDC88BA6NC98 Y_RNA.515-201ENST00000384535 112 ntBASIC-3□□□□□ -2.89
CCDC88BA6NC98 AC024067.1-201ENST00000426199 223 ntBASIC-3□□□□□ -2.89
CCDC88BA6NC98 Y_RNA.400-201ENST00000383963 111 ntBASIC-3.01□□□□□ -2.89
CCDC88BA6NC98 RNU6-20P-201ENST00000384106 107 ntBASIC-3.01□□□□□ -2.89
CCDC88BA6NC98 Y_RNA.528-201ENST00000384575 108 ntBASIC-3.01□□□□□ -2.89
CCDC88BA6NC98 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC-3.01□□□□□ -2.89
CCDC88BA6NC98 RNU6-383P-201ENST00000410864 94 ntBASIC-3.01□□□□□ -2.89
CCDC88BA6NC98 SNORD42B-201ENST00000458893 67 ntBASIC-3.01□□□□□ -2.89
CCDC88BA6NC98 SNORA19.3-201ENST00000516165 130 ntBASIC-3.01□□□□□ -2.89
CCDC88BA6NC98 MIR4424-201ENST00000585257 86 ntBASIC-3.01□□□□□ -2.89
CCDC88BA6NC98 SNORA63.6-201ENST00000364921 119 ntBASIC-3.02□□□□□ -2.89
CCDC88BA6NC98 RNU6-996P-201ENST00000365438 107 ntBASIC-3.02□□□□□ -2.89
CCDC88BA6NC98 SNORD77.4-201ENST00000516158 81 ntBASIC-3.02□□□□□ -2.89
CCDC88BA6NC98 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC-3.02□□□□□ -2.89
CCDC88BA6NC98 RNU6-282P-201ENST00000365357 103 ntBASIC-3.03□□□□□ -2.89
CCDC88BA6NC98 AL356010.1-201ENST00000456364 102 ntBASIC-3.03□□□□□ -2.89
CCDC88BA6NC98 HOTAIRM1_3.1-201ENST00000619974 59 ntBASIC-3.03□□□□□ -2.89
CCDC88BA6NC98 RNU6-850P-201ENST00000516934 103 ntBASIC-3.03□□□□□ -2.9
CCDC88BA6NC98 CR383656.11-201ENST00000552261 498 ntTSL 3 BASIC-3.03□□□□□ -2.9
CCDC88BA6NC98 AC090617.8-201ENST00000623339 167 ntBASIC-3.03□□□□□ -2.9
CCDC88BA6NC98 MIR5683-201ENST00000636514 76 ntBASIC-3.03□□□□□ -2.9
CCDC88BA6NC98 RNU6-1301P-201ENST00000362724 104 ntBASIC-3.04□□□□□ -2.9
CCDC88BA6NC98 RNU6-181P-201ENST00000363225 107 ntBASIC-3.04□□□□□ -2.9
CCDC88BA6NC98 Y_RNA.304-201ENST00000365011 112 ntBASIC-3.04□□□□□ -2.9
CCDC88BA6NC98 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC-3.04□□□□□ -2.9
CCDC88BA6NC98 RNU6-445P-201ENST00000516949 107 ntBASIC-3.04□□□□□ -2.9
CCDC88BA6NC98 MIR3123-201ENST00000583417 75 ntBASIC-3.04□□□□□ -2.9
CCDC88BA6NC98 AC133104.2-201ENST00000615272 193 ntBASIC-3.04□□□□□ -2.9
CCDC88BA6NC98 Y_RNA.105-201ENST00000363182 111 ntBASIC-3.05□□□□□ -2.9
CCDC88BA6NC98 RNU6-1200P-201ENST00000384162 107 ntBASIC-3.05□□□□□ -2.9
Retrieved 100 of 98,524 protein–RNA pairs in 282.3 ms