Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 AC067940.1-201ENST00000458411 300 ntBASIC0.95□□□□□ -2.26
LIMA1Q9UHB6 Y_RNA.676-201ENST00000516393 96 ntBASIC0.95□□□□□ -2.26
LIMA1Q9UHB6 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.95□□□□□ -2.26
LIMA1Q9UHB6 AP000753.3-201ENST00000604083 169 ntBASIC0.95□□□□□ -2.26
LIMA1Q9UHB6 FAM71BP1-201ENST00000604431 523 ntBASIC0.95□□□□□ -2.26
LIMA1Q9UHB6 RNU6-915P-201ENST00000364943 103 ntBASIC0.94□□□□□ -2.26
LIMA1Q9UHB6 RNU6-187P-201ENST00000384139 106 ntBASIC0.94□□□□□ -2.26
LIMA1Q9UHB6 RNY1P6-201ENST00000384193 109 ntBASIC0.94□□□□□ -2.26
LIMA1Q9UHB6 Y_RNA.488-201ENST00000384403 102 ntBASIC0.94□□□□□ -2.26
LIMA1Q9UHB6 RNU6-1319P-201ENST00000390855 104 ntBASIC0.94□□□□□ -2.26
LIMA1Q9UHB6 RNU6-747P-201ENST00000390928 104 ntBASIC0.94□□□□□ -2.26
LIMA1Q9UHB6 RNU6-241P-201ENST00000391148 104 ntBASIC0.94□□□□□ -2.26
LIMA1Q9UHB6 MIR513C-201ENST00000401352 84 ntBASIC0.94□□□□□ -2.26
LIMA1Q9UHB6 AL603914.1-201ENST00000401964 204 ntBASIC0.94□□□□□ -2.26
LIMA1Q9UHB6 RNU6-177P-201ENST00000411257 104 ntBASIC0.94□□□□□ -2.26
LIMA1Q9UHB6 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC0.94□□□□□ -2.26
LIMA1Q9UHB6 RNU6-351P-201ENST00000516097 100 ntBASIC0.94□□□□□ -2.26
LIMA1Q9UHB6 Y_RNA.690-201ENST00000516603 95 ntBASIC0.94□□□□□ -2.26
LIMA1Q9UHB6 MIR4264-201ENST00000583520 66 ntBASIC0.94□□□□□ -2.26
LIMA1Q9UHB6 AC021613.1-201ENST00000623880 111 ntBASIC0.94□□□□□ -2.26
LIMA1Q9UHB6 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC0.94□□□□□ -2.26
LIMA1Q9UHB6 MIR302B-201ENST00000362188 73 ntBASIC0.93□□□□□ -2.26
LIMA1Q9UHB6 SNORA1.1-201ENST00000364671 133 ntBASIC0.93□□□□□ -2.26
LIMA1Q9UHB6 Y_RNA.280-201ENST00000364765 112 ntBASIC0.93□□□□□ -2.26
LIMA1Q9UHB6 RNU1-36P-201ENST00000365130 165 ntBASIC0.93□□□□□ -2.26
LIMA1Q9UHB6 Y_RNA.568-201ENST00000384742 113 ntBASIC0.93□□□□□ -2.26
LIMA1Q9UHB6 RNU6-205P-201ENST00000390858 107 ntBASIC0.93□□□□□ -2.26
LIMA1Q9UHB6 SUMO1P3-201ENST00000439961 304 ntBASIC0.93□□□□□ -2.26
LIMA1Q9UHB6 RPL39P28-201ENST00000465655 155 ntBASIC0.93□□□□□ -2.26
LIMA1Q9UHB6 Y_RNA.703-201ENST00000516846 111 ntBASIC0.93□□□□□ -2.26
LIMA1Q9UHB6 RNU6-1258P-201ENST00000516911 111 ntBASIC0.93□□□□□ -2.26
LIMA1Q9UHB6 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC0.93□□□□□ -2.26
LIMA1Q9UHB6 AC108081.1-201ENST00000604358 221 ntBASIC0.93□□□□□ -2.26
LIMA1Q9UHB6 uc_338.6-201ENST00000613544 171 ntBASIC0.93□□□□□ -2.26
LIMA1Q9UHB6 AP001340.1-201ENST00000624405 217 ntBASIC0.93□□□□□ -2.26
LIMA1Q9UHB6 SNORD114-2-201ENST00000363953 78 ntBASIC0.92□□□□□ -2.26
LIMA1Q9UHB6 Y_RNA.294-201ENST00000364916 102 ntBASIC0.92□□□□□ -2.26
LIMA1Q9UHB6 Y_RNA.430-201ENST00000384081 110 ntBASIC0.92□□□□□ -2.26
LIMA1Q9UHB6 RNU6-746P-201ENST00000384112 109 ntBASIC0.92□□□□□ -2.26
LIMA1Q9UHB6 SNORD89-201ENST00000390981 114 ntBASIC0.92□□□□□ -2.26
LIMA1Q9UHB6 U7.7-201ENST00000459276 60 ntBASIC0.92□□□□□ -2.26
LIMA1Q9UHB6 RNU6-240P-201ENST00000516098 97 ntBASIC0.92□□□□□ -2.26
LIMA1Q9UHB6 ACA64.5-201ENST00000516207 127 ntBASIC0.92□□□□□ -2.26
LIMA1Q9UHB6 RNU7-70P-201ENST00000516941 66 ntBASIC0.92□□□□□ -2.26
LIMA1Q9UHB6 DLEU2_5.2-201ENST00000610606 84 ntBASIC0.92□□□□□ -2.26
LIMA1Q9UHB6 AC010332.2-201ENST00000613083 1904 ntBASIC0.91□□□□□ -2.26
LIMA1Q9UHB6 RNU6-580P-201ENST00000365159 107 ntBASIC0.91□□□□□ -2.26
LIMA1Q9UHB6 RNU6-257P-201ENST00000410238 98 ntBASIC0.91□□□□□ -2.26
LIMA1Q9UHB6 MTND4LP9-201ENST00000427694 174 ntBASIC0.91□□□□□ -2.26
LIMA1Q9UHB6 MTATP6P21-201ENST00000440681 189 ntBASIC0.91□□□□□ -2.26
LIMA1Q9UHB6 RNU6-1110P-201ENST00000516462 101 ntBASIC0.91□□□□□ -2.26
LIMA1Q9UHB6 IGKV1-22-201ENST00000524313 326 ntBASIC0.91□□□□□ -2.26
LIMA1Q9UHB6 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC0.91□□□□□ -2.26
LIMA1Q9UHB6 MIR3121-201ENST00000579680 77 ntBASIC0.91□□□□□ -2.26
LIMA1Q9UHB6 MIR6740-201ENST00000618268 113 ntBASIC0.91□□□□□ -2.26
LIMA1Q9UHB6 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.91□□□□□ -2.26
LIMA1Q9UHB6 SNORA22.1-201ENST00000362701 134 ntBASIC0.9□□□□□ -2.27
LIMA1Q9UHB6 RNU6-1335P-201ENST00000365426 107 ntBASIC0.9□□□□□ -2.27
LIMA1Q9UHB6 Y_RNA.366-201ENST00000365540 102 ntBASIC0.9□□□□□ -2.27
LIMA1Q9UHB6 SNORD12C-201ENST00000386307 89 ntBASIC0.9□□□□□ -2.27
LIMA1Q9UHB6 RNU6ATAC33P-201ENST00000408647 126 ntBASIC0.9□□□□□ -2.27
LIMA1Q9UHB6 RNA5SP144-201ENST00000410846 116 ntBASIC0.9□□□□□ -2.27
LIMA1Q9UHB6 snoU13.21-201ENST00000459368 105 ntBASIC0.9□□□□□ -2.27
LIMA1Q9UHB6 AP001328.1-201ENST00000528550 176 ntBASIC0.9□□□□□ -2.27
LIMA1Q9UHB6 Y_RNA.757-201ENST00000578934 114 ntBASIC0.9□□□□□ -2.27
LIMA1Q9UHB6 AC011603.4-201ENST00000611325 277 ntBASIC0.9□□□□□ -2.27
LIMA1Q9UHB6 SNORD114-27-201ENST00000363766 70 ntBASIC0.89□□□□□ -2.27
LIMA1Q9UHB6 RNU6-690P-201ENST00000365242 106 ntBASIC0.89□□□□□ -2.27
LIMA1Q9UHB6 SNORD38B-201ENST00000384690 67 ntBASIC0.89□□□□□ -2.27
LIMA1Q9UHB6 MIR608-201ENST00000384820 100 ntBASIC0.89□□□□□ -2.27
LIMA1Q9UHB6 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.89□□□□□ -2.27
LIMA1Q9UHB6 MIR1827-201ENST00000408549 66 ntBASIC0.89□□□□□ -2.27
LIMA1Q9UHB6 RNU2-35P-201ENST00000516446 142 ntBASIC0.89□□□□□ -2.27
LIMA1Q9UHB6 AL136317.1-201ENST00000612653 226 ntBASIC0.89□□□□□ -2.27
LIMA1Q9UHB6 SNORD38B-202ENST00000625943 69 ntBASIC0.89□□□□□ -2.27
LIMA1Q9UHB6 Y_RNA.171-201ENST00000363760 102 ntBASIC0.88□□□□□ -2.27
LIMA1Q9UHB6 SNORD18B-201ENST00000365659 72 ntBASIC0.88□□□□□ -2.27
LIMA1Q9UHB6 MIR563-201ENST00000385080 79 ntBASIC0.88□□□□□ -2.27
LIMA1Q9UHB6 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC0.88□□□□□ -2.27
LIMA1Q9UHB6 RNU7-62P-201ENST00000458856 62 ntBASIC0.88□□□□□ -2.27
LIMA1Q9UHB6 RNU6-113P-201ENST00000516653 101 ntBASIC0.88□□□□□ -2.27
LIMA1Q9UHB6 MIR4698-201ENST00000577795 80 ntBASIC0.88□□□□□ -2.27
LIMA1Q9UHB6 MIR3973-201ENST00000579824 107 ntBASIC0.88□□□□□ -2.27
LIMA1Q9UHB6 AC025627.3-201ENST00000582078 182 ntBASIC0.88□□□□□ -2.27
LIMA1Q9UHB6 AC211469.2-201ENST00000605461 205 ntBASIC0.88□□□□□ -2.27
LIMA1Q9UHB6 AL353765.1-201ENST00000605514 183 ntBASIC0.88□□□□□ -2.27
LIMA1Q9UHB6 U7.2-201ENST00000607576 63 ntBASIC0.88□□□□□ -2.27
LIMA1Q9UHB6 MIR6857-201ENST00000613267 93 ntBASIC0.88□□□□□ -2.27
LIMA1Q9UHB6 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC0.88□□□□□ -2.27
LIMA1Q9UHB6 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.88□□□□□ -2.27
LIMA1Q9UHB6 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC0.88□□□□□ -2.27
LIMA1Q9UHB6 Y_RNA.114-201ENST00000363265 113 ntBASIC0.87□□□□□ -2.27
LIMA1Q9UHB6 Y_RNA.343-201ENST00000365354 112 ntBASIC0.87□□□□□ -2.27
LIMA1Q9UHB6 SNORD50.2-201ENST00000365465 70 ntBASIC0.87□□□□□ -2.27
LIMA1Q9UHB6 Y_RNA.470-201ENST00000384307 117 ntBASIC0.87□□□□□ -2.27
LIMA1Q9UHB6 Y_RNA.586-201ENST00000391146 98 ntBASIC0.87□□□□□ -2.27
LIMA1Q9UHB6 RNA5SP261-201ENST00000410536 106 ntBASIC0.87□□□□□ -2.27
LIMA1Q9UHB6 snoU13.2-201ENST00000459201 104 ntBASIC0.87□□□□□ -2.27
LIMA1Q9UHB6 MIR4305-201ENST00000583252 102 ntBASIC0.87□□□□□ -2.27
LIMA1Q9UHB6 AC013244.2-201ENST00000603396 103 ntBASIC0.87□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 204.3 ms