Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 SNORA53-201ENST00000391141 249 ntBASIC-0.43□□□□□ -2.48
VCX3AQ9NNX9 LINC01691-201ENST00000450546 426 ntTSL 5 BASIC-0.43□□□□□ -2.48
VCX3AQ9NNX9 SNRPGP8-201ENST00000454064 226 ntBASIC-0.43□□□□□ -2.48
VCX3AQ9NNX9 RNU6-320P-201ENST00000516511 106 ntBASIC-0.43□□□□□ -2.48
VCX3AQ9NNX9 CR383656.11-201ENST00000552261 498 ntTSL 3 BASIC-0.43□□□□□ -2.48
VCX3AQ9NNX9 AC037487.3-201ENST00000606668 112 ntBASIC-0.43□□□□□ -2.48
VCX3AQ9NNX9 AC090574.1-201ENST00000623186 233 ntBASIC-0.43□□□□□ -2.48
VCX3AQ9NNX9 Y_RNA.56-201ENST00000362798 112 ntBASIC-0.44□□□□□ -2.48
VCX3AQ9NNX9 Y_RNA.70-201ENST00000362886 110 ntBASIC-0.44□□□□□ -2.48
VCX3AQ9NNX9 Y_RNA.152-201ENST00000363578 100 ntBASIC-0.44□□□□□ -2.48
VCX3AQ9NNX9 RNA5SP403-201ENST00000363598 108 ntBASIC-0.44□□□□□ -2.48
VCX3AQ9NNX9 RNU4-16P-201ENST00000364737 141 ntBASIC-0.44□□□□□ -2.48
VCX3AQ9NNX9 SNORD49B-201ENST00000365172 72 ntBASIC-0.44□□□□□ -2.48
VCX3AQ9NNX9 RNU6-326P-201ENST00000365480 107 ntBASIC-0.44□□□□□ -2.48
VCX3AQ9NNX9 SNORA63.7-201ENST00000365579 123 ntBASIC-0.44□□□□□ -2.48
VCX3AQ9NNX9 RNU6-1292P-201ENST00000383856 107 ntBASIC-0.44□□□□□ -2.48
VCX3AQ9NNX9 MIR214-201ENST00000385214 110 ntBASIC-0.44□□□□□ -2.48
VCX3AQ9NNX9 MT-TT-201ENST00000387460 66 ntBASIC-0.44□□□□□ -2.48
VCX3AQ9NNX9 SNORD41.1-201ENST00000391000 69 ntBASIC-0.44□□□□□ -2.48
VCX3AQ9NNX9 RNA5SP300-201ENST00000391197 107 ntBASIC-0.44□□□□□ -2.48
VCX3AQ9NNX9 MIR876-201ENST00000401147 81 ntBASIC-0.44□□□□□ -2.48
VCX3AQ9NNX9 MIR1197-201ENST00000408818 88 ntBASIC-0.44□□□□□ -2.48
VCX3AQ9NNX9 Y_RNA.618-201ENST00000410949 107 ntBASIC-0.44□□□□□ -2.48
VCX3AQ9NNX9 RPL21P38-201ENST00000418090 167 ntBASIC-0.44□□□□□ -2.48
VCX3AQ9NNX9 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC-0.44□□□□□ -2.48
VCX3AQ9NNX9 RNU7-79P-201ENST00000516082 62 ntBASIC-0.44□□□□□ -2.48
VCX3AQ9NNX9 SNORA27.4-201ENST00000516650 95 ntBASIC-0.44□□□□□ -2.48
VCX3AQ9NNX9 AC011921.3-201ENST00000605540 361 ntBASIC-0.44□□□□□ -2.48
VCX3AQ9NNX9 RNU4-73P-201ENST00000363164 141 ntBASIC-0.45□□□□□ -2.48
VCX3AQ9NNX9 Y_RNA.315-201ENST00000365117 102 ntBASIC-0.45□□□□□ -2.48
VCX3AQ9NNX9 Y_RNA.541-201ENST00000384640 113 ntBASIC-0.45□□□□□ -2.48
VCX3AQ9NNX9 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC-0.45□□□□□ -2.48
VCX3AQ9NNX9 RNU6-121P-201ENST00000410525 99 ntBASIC-0.45□□□□□ -2.48
VCX3AQ9NNX9 AC109327.2-201ENST00000448339 378 ntBASIC-0.45□□□□□ -2.48
VCX3AQ9NNX9 RNU7-70P-201ENST00000516941 66 ntBASIC-0.45□□□□□ -2.48
VCX3AQ9NNX9 RNU7-35P-201ENST00000517174 62 ntBASIC-0.45□□□□□ -2.48
VCX3AQ9NNX9 AL365205.2-201ENST00000594586 68 ntBASIC-0.45□□□□□ -2.48
VCX3AQ9NNX9 Y_RNA.125-201ENST00000363371 111 ntBASIC-0.46□□□□□ -2.48
VCX3AQ9NNX9 Y_RNA.226-201ENST00000364337 114 ntBASIC-0.46□□□□□ -2.48
VCX3AQ9NNX9 RNU6-211P-201ENST00000384047 107 ntBASIC-0.46□□□□□ -2.48
VCX3AQ9NNX9 RNU6ATAC25P-201ENST00000408798 117 ntBASIC-0.46□□□□□ -2.48
VCX3AQ9NNX9 AC006210.1-201ENST00000424882 111 ntBASIC-0.46□□□□□ -2.48
VCX3AQ9NNX9 HMGN2P22-201ENST00000427588 175 ntBASIC-0.46□□□□□ -2.48
VCX3AQ9NNX9 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC-0.46□□□□□ -2.48
VCX3AQ9NNX9 Y_RNA.676-201ENST00000516393 96 ntBASIC-0.46□□□□□ -2.48
VCX3AQ9NNX9 RNU6-1258P-201ENST00000516911 111 ntBASIC-0.46□□□□□ -2.48
VCX3AQ9NNX9 Y_RNA.757-201ENST00000578934 114 ntBASIC-0.46□□□□□ -2.48
VCX3AQ9NNX9 U6atac.1-201ENST00000616025 117 ntBASIC-0.46□□□□□ -2.48
VCX3AQ9NNX9 AC067863.3-201ENST00000624172 122 ntBASIC-0.46□□□□□ -2.48
VCX3AQ9NNX9 UBE2WP1-201ENST00000362030 340 ntBASIC-0.47□□□□□ -2.48
VCX3AQ9NNX9 snoU2_19.2-201ENST00000363024 80 ntBASIC-0.47□□□□□ -2.48
VCX3AQ9NNX9 Y_RNA.171-201ENST00000363760 102 ntBASIC-0.47□□□□□ -2.48
VCX3AQ9NNX9 Y_RNA.199-201ENST00000364014 102 ntBASIC-0.47□□□□□ -2.48
VCX3AQ9NNX9 SNORD14C-201ENST00000365382 88 ntBASIC-0.47□□□□□ -2.48
VCX3AQ9NNX9 Y_RNA.366-201ENST00000365540 102 ntBASIC-0.47□□□□□ -2.48
VCX3AQ9NNX9 AL606845.1-201ENST00000404881 255 ntBASIC-0.47□□□□□ -2.48
VCX3AQ9NNX9 AC138393.2-201ENST00000414742 246 ntBASIC-0.47□□□□□ -2.48
VCX3AQ9NNX9 RNU6-893P-201ENST00000458841 100 ntBASIC-0.47□□□□□ -2.48
VCX3AQ9NNX9 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC-0.47□□□□□ -2.48
VCX3AQ9NNX9 AC098479.1-201ENST00000609225 154 ntBASIC-0.47□□□□□ -2.48
VCX3AQ9NNX9 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC-0.47□□□□□ -2.48
VCX3AQ9NNX9 snoU2_19.4-201ENST00000364329 80 ntBASIC-0.48□□□□□ -2.49
VCX3AQ9NNX9 RNY1P2-201ENST00000364820 117 ntBASIC-0.48□□□□□ -2.49
VCX3AQ9NNX9 Y_RNA.515-201ENST00000384535 112 ntBASIC-0.48□□□□□ -2.49
VCX3AQ9NNX9 RNU4-70P-201ENST00000384579 139 ntBASIC-0.48□□□□□ -2.49
VCX3AQ9NNX9 MIR616-201ENST00000385293 97 ntBASIC-0.48□□□□□ -2.49
VCX3AQ9NNX9 SNORD110-201ENST00000408189 75 ntBASIC-0.48□□□□□ -2.49
VCX3AQ9NNX9 RNU6-453P-201ENST00000516819 85 ntBASIC-0.48□□□□□ -2.49
VCX3AQ9NNX9 MIR3124-201ENST00000582636 67 ntBASIC-0.48□□□□□ -2.49
VCX3AQ9NNX9 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC-0.48□□□□□ -2.49
VCX3AQ9NNX9 AC084368.1-201ENST00000620935 65 ntBASIC-0.48□□□□□ -2.49
VCX3AQ9NNX9 AL162726.3-218ENST00000636401 95 ntBASIC-0.48□□□□□ -2.49
VCX3AQ9NNX9 Y_RNA.112-201ENST00000363250 102 ntBASIC-0.49□□□□□ -2.49
VCX3AQ9NNX9 Y_RNA.119-201ENST00000363301 96 ntBASIC-0.49□□□□□ -2.49
VCX3AQ9NNX9 Y_RNA.197-201ENST00000364004 102 ntBASIC-0.49□□□□□ -2.49
VCX3AQ9NNX9 RNU4-40P-201ENST00000364351 143 ntBASIC-0.49□□□□□ -2.49
VCX3AQ9NNX9 RNU6-450P-201ENST00000364654 107 ntBASIC-0.49□□□□□ -2.49
VCX3AQ9NNX9 AC244250.2-201ENST00000418731 148 ntBASIC-0.49□□□□□ -2.49
VCX3AQ9NNX9 RNA5SP484-201ENST00000458857 111 ntBASIC-0.49□□□□□ -2.49
VCX3AQ9NNX9 SNORD126-201ENST00000459475 77 ntBASIC-0.49□□□□□ -2.49
VCX3AQ9NNX9 FGF7P4-201ENST00000509595 295 ntBASIC-0.49□□□□□ -2.49
VCX3AQ9NNX9 SNORA25.13-201ENST00000516395 103 ntBASIC-0.49□□□□□ -2.49
VCX3AQ9NNX9 IGHVIII-67-2-201ENST00000519849 88 ntBASIC-0.49□□□□□ -2.49
VCX3AQ9NNX9 NAMPTP3-201ENST00000569273 224 ntBASIC-0.49□□□□□ -2.49
VCX3AQ9NNX9 MIR548H5-201ENST00000580314 60 ntBASIC-0.49□□□□□ -2.49
VCX3AQ9NNX9 UBE2V2P2-201ENST00000587677 504 ntBASIC-0.49□□□□□ -2.49
VCX3AQ9NNX9 AL356055.1-201ENST00000602528 446 ntBASIC-0.49□□□□□ -2.49
VCX3AQ9NNX9 MIR4788-201ENST00000639104 80 ntBASIC-0.49□□□□□ -2.49
VCX3AQ9NNX9 RNA5SP275-201ENST00000363936 118 ntBASIC-0.5□□□□□ -2.49
VCX3AQ9NNX9 RNU6-811P-201ENST00000384069 107 ntBASIC-0.5□□□□□ -2.49
VCX3AQ9NNX9 Y_RNA.470-201ENST00000384307 117 ntBASIC-0.5□□□□□ -2.49
VCX3AQ9NNX9 Y_RNA.477-201ENST00000384352 108 ntBASIC-0.5□□□□□ -2.49
VCX3AQ9NNX9 Y_RNA.645-201ENST00000391229 102 ntBASIC-0.5□□□□□ -2.49
VCX3AQ9NNX9 BX276092.1-201ENST00000427368 251 ntBASIC-0.5□□□□□ -2.49
VCX3AQ9NNX9 AC082651.2-201ENST00000496833 166 ntBASIC-0.5□□□□□ -2.49
VCX3AQ9NNX9 RNU7-137P-201ENST00000516788 62 ntBASIC-0.5□□□□□ -2.49
VCX3AQ9NNX9 SCARNA15-202ENST00000516881 127 ntBASIC-0.5□□□□□ -2.49
VCX3AQ9NNX9 PVT1_3.1-201ENST00000620853 95 ntBASIC-0.5□□□□□ -2.49
VCX3AQ9NNX9 Y_RNA.16-201ENST00000362421 102 ntBASIC-0.51□□□□□ -2.49
VCX3AQ9NNX9 Y_RNA.176-201ENST00000363815 109 ntBASIC-0.51□□□□□ -2.49
Retrieved 100 of 98,524 protein–RNA pairs in 201.5 ms