Protein–RNA interactions for Protein: Q9H0E7

USP44, Ubiquitin carboxyl-terminal hydrolase 44, humanhuman

Predictions only

Length 712 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP44Q9H0E7 RNU1-133P-201ENST00000364867 167 ntBASIC0.96□□□□□ -2.26
USP44Q9H0E7 Y_RNA.354-201ENST00000365448 111 ntBASIC0.96□□□□□ -2.26
USP44Q9H0E7 RNU6ATAC20P-201ENST00000408436 127 ntBASIC0.96□□□□□ -2.26
USP44Q9H0E7 RNU6ATAC33P-201ENST00000408647 126 ntBASIC0.96□□□□□ -2.26
USP44Q9H0E7 RNU6-994P-201ENST00000410507 111 ntBASIC0.96□□□□□ -2.26
USP44Q9H0E7 RNU2-64P-201ENST00000411315 191 ntBASIC0.96□□□□□ -2.26
USP44Q9H0E7 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC0.96□□□□□ -2.26
USP44Q9H0E7 RNU7-70P-201ENST00000516941 66 ntBASIC0.96□□□□□ -2.26
USP44Q9H0E7 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC0.96□□□□□ -2.26
USP44Q9H0E7 MIR3646-201ENST00000578301 84 ntBASIC0.96□□□□□ -2.26
USP44Q9H0E7 DNAJC19P2-201ENST00000593340 302 ntBASIC0.96□□□□□ -2.26
USP44Q9H0E7 FTX_2.1-201ENST00000618816 94 ntBASIC0.96□□□□□ -2.26
USP44Q9H0E7 RNU6-818P-201ENST00000364837 108 ntBASIC0.95□□□□□ -2.26
USP44Q9H0E7 RNU6-1319P-201ENST00000390855 104 ntBASIC0.95□□□□□ -2.26
USP44Q9H0E7 RNU6-747P-201ENST00000390928 104 ntBASIC0.95□□□□□ -2.26
USP44Q9H0E7 RNU6-241P-201ENST00000391148 104 ntBASIC0.95□□□□□ -2.26
USP44Q9H0E7 PCNPP3-201ENST00000393579 471 ntBASIC0.95□□□□□ -2.26
USP44Q9H0E7 RNU6-177P-201ENST00000411257 104 ntBASIC0.95□□□□□ -2.26
USP44Q9H0E7 Y_RNA.150-201ENST00000363562 102 ntBASIC0.94□□□□□ -2.26
USP44Q9H0E7 Y_RNA.466-201ENST00000384294 113 ntBASIC0.94□□□□□ -2.26
USP44Q9H0E7 Y_RNA.497-201ENST00000384447 98 ntBASIC0.94□□□□□ -2.26
USP44Q9H0E7 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.94□□□□□ -2.26
USP44Q9H0E7 RPS3AP1-201ENST00000413190 320 ntBASIC0.94□□□□□ -2.26
USP44Q9H0E7 snoU13.21-201ENST00000459368 105 ntBASIC0.94□□□□□ -2.26
USP44Q9H0E7 RNA5SP236-201ENST00000516169 116 ntBASIC0.94□□□□□ -2.26
USP44Q9H0E7 AC022709.1-201ENST00000615967 87 ntBASIC0.94□□□□□ -2.26
USP44Q9H0E7 MIR6740-201ENST00000618268 113 ntBASIC0.94□□□□□ -2.26
USP44Q9H0E7 RNU6-886P-201ENST00000384319 105 ntBASIC0.93□□□□□ -2.26
USP44Q9H0E7 SNORD12C-201ENST00000386307 89 ntBASIC0.93□□□□□ -2.26
USP44Q9H0E7 RNU6-394P-201ENST00000410735 107 ntBASIC0.93□□□□□ -2.26
USP44Q9H0E7 RNU7-62P-201ENST00000458856 62 ntBASIC0.93□□□□□ -2.26
USP44Q9H0E7 AC104465.1-201ENST00000611365 139 ntBASIC0.93□□□□□ -2.26
USP44Q9H0E7 uc_338.6-201ENST00000613544 171 ntBASIC0.93□□□□□ -2.26
USP44Q9H0E7 AC021613.1-201ENST00000623880 111 ntBASIC0.93□□□□□ -2.26
USP44Q9H0E7 MIR1-1-201ENST00000362147 71 ntBASIC0.92□□□□□ -2.26
USP44Q9H0E7 Y_RNA.430-201ENST00000384081 110 ntBASIC0.92□□□□□ -2.26
USP44Q9H0E7 SNORD89-201ENST00000390981 114 ntBASIC0.92□□□□□ -2.26
USP44Q9H0E7 SNORD37.2-201ENST00000391075 66 ntBASIC0.92□□□□□ -2.26
USP44Q9H0E7 snoU13.2-201ENST00000459201 104 ntBASIC0.92□□□□□ -2.26
USP44Q9H0E7 RPL39P28-201ENST00000465655 155 ntBASIC0.92□□□□□ -2.26
USP44Q9H0E7 AC113410.1-201ENST00000505029 247 ntBASIC0.92□□□□□ -2.26
USP44Q9H0E7 RNU2-60P-201ENST00000517290 128 ntBASIC0.92□□□□□ -2.26
USP44Q9H0E7 MIR3152-201ENST00000579801 74 ntBASIC0.92□□□□□ -2.26
USP44Q9H0E7 Y_RNA.270-201ENST00000364693 104 ntBASIC0.91□□□□□ -2.26
USP44Q9H0E7 RNU4-16P-201ENST00000364737 141 ntBASIC0.91□□□□□ -2.26
USP44Q9H0E7 RNU6-1130P-201ENST00000365434 107 ntBASIC0.91□□□□□ -2.26
USP44Q9H0E7 MIR608-201ENST00000384820 100 ntBASIC0.91□□□□□ -2.26
USP44Q9H0E7 MIR588-201ENST00000384900 83 ntBASIC0.91□□□□□ -2.26
USP44Q9H0E7 MIR1827-201ENST00000408549 66 ntBASIC0.91□□□□□ -2.26
USP44Q9H0E7 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC0.91□□□□□ -2.26
USP44Q9H0E7 MIR6841-201ENST00000637129 72 ntBASIC0.91□□□□□ -2.26
USP44Q9H0E7 RNU6-349P-201ENST00000362402 107 ntBASIC0.9□□□□□ -2.27
USP44Q9H0E7 RNU6-369P-201ENST00000362515 102 ntBASIC0.9□□□□□ -2.27
USP44Q9H0E7 Y_RNA.251-201ENST00000364551 99 ntBASIC0.9□□□□□ -2.27
USP44Q9H0E7 RNU6-804P-201ENST00000384286 107 ntBASIC0.9□□□□□ -2.27
USP44Q9H0E7 MIR613-201ENST00000385248 95 ntBASIC0.9□□□□□ -2.27
USP44Q9H0E7 Y_RNA.580-201ENST00000391004 95 ntBASIC0.9□□□□□ -2.27
USP44Q9H0E7 SNORD83.1-201ENST00000411362 77 ntBASIC0.9□□□□□ -2.27
USP44Q9H0E7 MIR18B-201ENST00000454574 71 ntBASIC0.9□□□□□ -2.27
USP44Q9H0E7 MIR4653-201ENST00000585107 83 ntBASIC0.9□□□□□ -2.27
USP44Q9H0E7 AC098479.1-201ENST00000609225 154 ntBASIC0.9□□□□□ -2.27
USP44Q9H0E7 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.89□□□□□ -2.27
USP44Q9H0E7 RNU4-11P-201ENST00000365287 132 ntBASIC0.89□□□□□ -2.27
USP44Q9H0E7 RNU6-1335P-201ENST00000365426 107 ntBASIC0.89□□□□□ -2.27
USP44Q9H0E7 RNY1P6-201ENST00000384193 109 ntBASIC0.89□□□□□ -2.27
USP44Q9H0E7 SNORA20-201ENST00000384662 132 ntBASIC0.89□□□□□ -2.27
USP44Q9H0E7 MIR563-201ENST00000385080 79 ntBASIC0.89□□□□□ -2.27
USP44Q9H0E7 AC112693.2-201ENST00000556538 232 ntBASIC0.89□□□□□ -2.27
USP44Q9H0E7 MIR6835-201ENST00000621552 64 ntBASIC0.89□□□□□ -2.27
USP44Q9H0E7 AC010332.2-201ENST00000613083 1904 ntBASIC0.88□□□□□ -2.27
USP44Q9H0E7 SNORA22.1-201ENST00000362701 134 ntBASIC0.88□□□□□ -2.27
USP44Q9H0E7 RNU6-151P-201ENST00000364158 107 ntBASIC0.88□□□□□ -2.27
USP44Q9H0E7 RNU6-934P-201ENST00000365154 107 ntBASIC0.88□□□□□ -2.27
USP44Q9H0E7 RNU6-449P-201ENST00000383914 107 ntBASIC0.88□□□□□ -2.27
USP44Q9H0E7 RNU6-110P-201ENST00000384508 104 ntBASIC0.88□□□□□ -2.27
USP44Q9H0E7 RNU6ATAC6P-201ENST00000408132 126 ntBASIC0.88□□□□□ -2.27
USP44Q9H0E7 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.88□□□□□ -2.27
USP44Q9H0E7 RNU6-1165P-201ENST00000410119 107 ntBASIC0.88□□□□□ -2.27
USP44Q9H0E7 AC015818.7-201ENST00000428754 109 ntBASIC0.88□□□□□ -2.27
USP44Q9H0E7 AC087499.7-201ENST00000441958 109 ntBASIC0.88□□□□□ -2.27
USP44Q9H0E7 RNU6-893P-201ENST00000458841 100 ntBASIC0.88□□□□□ -2.27
USP44Q9H0E7 MIR5000-201ENST00000577717 103 ntBASIC0.88□□□□□ -2.27
USP44Q9H0E7 MIR3144-201ENST00000579460 79 ntBASIC0.88□□□□□ -2.27
USP44Q9H0E7 AL353765.1-201ENST00000605514 183 ntBASIC0.88□□□□□ -2.27
USP44Q9H0E7 MIR6515-201ENST00000619843 57 ntBASIC0.88□□□□□ -2.27
USP44Q9H0E7 Y_RNA.778-201ENST00000620203 90 ntBASIC0.88□□□□□ -2.27
USP44Q9H0E7 MIR6866-201ENST00000638146 69 ntBASIC0.88□□□□□ -2.27
USP44Q9H0E7 Y_RNA.8-201ENST00000362353 102 ntBASIC0.87□□□□□ -2.27
USP44Q9H0E7 RNU6-508P-201ENST00000363231 103 ntBASIC0.87□□□□□ -2.27
USP44Q9H0E7 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.87□□□□□ -2.27
USP44Q9H0E7 SNORD116-18-201ENST00000383961 92 ntBASIC0.87□□□□□ -2.27
USP44Q9H0E7 Y_RNA.555-201ENST00000384673 110 ntBASIC0.87□□□□□ -2.27
USP44Q9H0E7 Y_RNA.584-201ENST00000391090 114 ntBASIC0.87□□□□□ -2.27
USP44Q9H0E7 RPS26P5-201ENST00000418544 335 ntBASIC0.87□□□□□ -2.27
USP44Q9H0E7 ACA64.5-201ENST00000516207 127 ntBASIC0.87□□□□□ -2.27
USP44Q9H0E7 RNU6-1258P-201ENST00000516911 111 ntBASIC0.87□□□□□ -2.27
USP44Q9H0E7 MIR4714-201ENST00000580728 77 ntBASIC0.87□□□□□ -2.27
USP44Q9H0E7 AC013244.2-201ENST00000603396 103 ntBASIC0.87□□□□□ -2.27
USP44Q9H0E7 Y_RNA.398-201ENST00000383952 99 ntBASIC0.86□□□□□ -2.27
USP44Q9H0E7 RNU6-907P-201ENST00000390924 102 ntBASIC0.86□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 264.6 ms