Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 DEFB122-202ENST00000569013 197 ntBASIC1.82□□□□□ -2.12
MSX2P35548 FAM71BP1-201ENST00000604431 523 ntBASIC1.82□□□□□ -2.12
MSX2P35548 AL442128.1-201ENST00000615151 90 ntBASIC1.82□□□□□ -2.12
MSX2P35548 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC1.82□□□□□ -2.12
MSX2P35548 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC1.82□□□□□ -2.12
MSX2P35548 RNU6-439P-201ENST00000384188 106 ntBASIC1.81□□□□□ -2.12
MSX2P35548 RNU6-342P-201ENST00000384521 104 ntBASIC1.81□□□□□ -2.12
MSX2P35548 SNORA64-201ENST00000384674 134 ntBASIC1.81□□□□□ -2.12
MSX2P35548 Y_RNA.558-201ENST00000384685 113 ntBASIC1.81□□□□□ -2.12
MSX2P35548 MIR520C-201ENST00000385005 87 ntBASIC1.81□□□□□ -2.12
MSX2P35548 RNU6-762P-201ENST00000517107 102 ntBASIC1.81□□□□□ -2.12
MSX2P35548 RNU6-844P-201ENST00000517175 102 ntBASIC1.81□□□□□ -2.12
MSX2P35548 MIR1273D-201ENST00000577266 86 ntBASIC1.81□□□□□ -2.12
MSX2P35548 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC1.81□□□□□ -2.12
MSX2P35548 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC1.81□□□□□ -2.12
MSX2P35548 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC1.81□□□□□ -2.12
MSX2P35548 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC1.8□□□□□ -2.12
MSX2P35548 Y_RNA.10-201ENST00000362371 110 ntBASIC1.8□□□□□ -2.12
MSX2P35548 Y_RNA.220-201ENST00000364244 109 ntBASIC1.8□□□□□ -2.12
MSX2P35548 Y_RNA.377-201ENST00000365644 108 ntBASIC1.8□□□□□ -2.12
MSX2P35548 RNU6-1201P-201ENST00000384227 107 ntBASIC1.8□□□□□ -2.12
MSX2P35548 MIR764-201ENST00000390811 85 ntBASIC1.8□□□□□ -2.12
MSX2P35548 AC096949.1-201ENST00000412047 152 ntBASIC1.8□□□□□ -2.12
MSX2P35548 RNU6-521P-201ENST00000516663 105 ntBASIC1.8□□□□□ -2.12
MSX2P35548 MIR548AO-201ENST00000579992 96 ntBASIC1.8□□□□□ -2.12
MSX2P35548 AC012531.4-201ENST00000616509 177 ntBASIC1.8□□□□□ -2.12
MSX2P35548 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC1.8□□□□□ -2.12
MSX2P35548 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC1.8□□□□□ -2.12
MSX2P35548 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC1.8□□□□□ -2.12
MSX2P35548 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC1.79□□□□□ -2.12
MSX2P35548 RNU6-170P-201ENST00000362832 104 ntBASIC1.79□□□□□ -2.12
MSX2P35548 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC1.79□□□□□ -2.12
MSX2P35548 RNU6-602P-201ENST00000411155 105 ntBASIC1.79□□□□□ -2.12
MSX2P35548 AC090844.1-201ENST00000422019 156 ntBASIC1.79□□□□□ -2.12
MSX2P35548 AC004941.2-201ENST00000427009 228 ntBASIC1.79□□□□□ -2.12
MSX2P35548 JTBP1-201ENST00000441314 247 ntBASIC1.79□□□□□ -2.12
MSX2P35548 HMGN2P23-201ENST00000456759 269 ntBASIC1.79□□□□□ -2.12
MSX2P35548 RNU7-41P-201ENST00000515917 61 ntBASIC1.79□□□□□ -2.12
MSX2P35548 RNU6-795P-201ENST00000516323 103 ntBASIC1.79□□□□□ -2.12
MSX2P35548 RNU6-1018P-201ENST00000516577 106 ntBASIC1.79□□□□□ -2.12
MSX2P35548 SNORA44.1-201ENST00000517031 108 ntBASIC1.79□□□□□ -2.12
MSX2P35548 RNU7-35P-201ENST00000517174 62 ntBASIC1.79□□□□□ -2.12
MSX2P35548 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC1.79□□□□□ -2.12
MSX2P35548 MIR8074-201ENST00000615081 81 ntBASIC1.79□□□□□ -2.12
MSX2P35548 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC1.79□□□□□ -2.12
MSX2P35548 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.78□□□□□ -2.12
MSX2P35548 RNU6-1313P-201ENST00000362622 102 ntBASIC1.78□□□□□ -2.12
MSX2P35548 SNORA16.1-201ENST00000364597 132 ntBASIC1.78□□□□□ -2.12
MSX2P35548 MIR30A-201ENST00000385092 71 ntBASIC1.78□□□□□ -2.12
MSX2P35548 AC245047.7-201ENST00000440265 293 ntBASIC1.78□□□□□ -2.12
MSX2P35548 MIR548Z-201ENST00000584743 97 ntBASIC1.78□□□□□ -2.12
MSX2P35548 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC1.78□□□□□ -2.12
MSX2P35548 MIR4251-201ENST00000635819 61 ntBASIC1.78□□□□□ -2.12
MSX2P35548 AC091304.10-201ENST00000641554 121 ntBASIC1.78□□□□□ -2.12
MSX2P35548 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC1.78□□□□□ -2.12
MSX2P35548 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.77□□□□□ -2.13
MSX2P35548 SNORD114-1-201ENST00000362705 72 ntBASIC1.77□□□□□ -2.13
MSX2P35548 RNA5SP99-201ENST00000364020 114 ntBASIC1.77□□□□□ -2.13
MSX2P35548 Y_RNA.290-201ENST00000364879 114 ntBASIC1.77□□□□□ -2.13
MSX2P35548 SNORD115-35-201ENST00000365122 82 ntBASIC1.77□□□□□ -2.13
MSX2P35548 SNORA18-201ENST00000384416 132 ntBASIC1.77□□□□□ -2.13
MSX2P35548 MIR513A1-201ENST00000385138 129 ntBASIC1.77□□□□□ -2.13
MSX2P35548 SNORD41-201ENST00000386967 70 ntBASIC1.77□□□□□ -2.13
MSX2P35548 RNU6-1307P-201ENST00000391012 103 ntBASIC1.77□□□□□ -2.13
MSX2P35548 RNY4P29-201ENST00000410801 97 ntBASIC1.77□□□□□ -2.13
MSX2P35548 RNU7-61P-201ENST00000515897 61 ntBASIC1.77□□□□□ -2.13
MSX2P35548 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC1.77□□□□□ -2.13
MSX2P35548 MIR4419B-201ENST00000577260 68 ntBASIC1.77□□□□□ -2.13
MSX2P35548 MIR4777-201ENST00000583710 86 ntBASIC1.77□□□□□ -2.13
MSX2P35548 AC012493.3-201ENST00000604494 112 ntBASIC1.77□□□□□ -2.13
MSX2P35548 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.76□□□□□ -2.13
MSX2P35548 SNORD48-201ENST00000364953 64 ntBASIC1.76□□□□□ -2.13
MSX2P35548 Y_RNA.354-201ENST00000365448 111 ntBASIC1.76□□□□□ -2.13
MSX2P35548 Y_RNA.388-201ENST00000383919 113 ntBASIC1.76□□□□□ -2.13
MSX2P35548 RNU6-644P-201ENST00000391155 98 ntBASIC1.76□□□□□ -2.13
MSX2P35548 AC019129.1-201ENST00000403786 261 ntBASIC1.76□□□□□ -2.13
MSX2P35548 RPL31P63-201ENST00000422565 375 ntBASIC1.76□□□□□ -2.13
MSX2P35548 AC008834.1-201ENST00000511612 175 ntBASIC1.76□□□□□ -2.13
MSX2P35548 RNU6-322P-201ENST00000516010 103 ntBASIC1.76□□□□□ -2.13
MSX2P35548 RNU7-2P-201ENST00000516096 62 ntBASIC1.76□□□□□ -2.13
MSX2P35548 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.76□□□□□ -2.13
MSX2P35548 MIR3198-2-201ENST00000577868 80 ntBASIC1.76□□□□□ -2.13
MSX2P35548 SNORA77B-201ENST00000578179 125 ntBASIC1.76□□□□□ -2.13
MSX2P35548 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.76□□□□□ -2.13
MSX2P35548 RNA5SP259-201ENST00000365541 109 ntBASIC1.75□□□□□ -2.13
MSX2P35548 RNU6-482P-201ENST00000391068 107 ntBASIC1.75□□□□□ -2.13
MSX2P35548 AL451046.2-201ENST00000403074 277 ntBASIC1.75□□□□□ -2.13
MSX2P35548 SNORD111.1-201ENST00000516421 86 ntBASIC1.75□□□□□ -2.13
MSX2P35548 CYP3A52P-201ENST00000563326 91 ntBASIC1.75□□□□□ -2.13
MSX2P35548 AC015688.6-201ENST00000577737 104 ntBASIC1.75□□□□□ -2.13
MSX2P35548 SNORD45B-201ENST00000364617 72 ntBASIC1.74□□□□□ -2.13
MSX2P35548 RNU6-60P-201ENST00000364792 103 ntBASIC1.74□□□□□ -2.13
MSX2P35548 RNA5SP363-201ENST00000365072 115 ntBASIC1.74□□□□□ -2.13
MSX2P35548 MIR206-201ENST00000384872 86 ntBASIC1.74□□□□□ -2.13
MSX2P35548 SNORA26.2-201ENST00000390922 122 ntBASIC1.74□□□□□ -2.13
MSX2P35548 AC009474.2-201ENST00000451383 136 ntBASIC1.74□□□□□ -2.13
MSX2P35548 UBL5P1-201ENST00000507979 193 ntBASIC1.74□□□□□ -2.13
MSX2P35548 AC108729.3-201ENST00000513484 108 ntBASIC1.74□□□□□ -2.13
MSX2P35548 RNU6-1006P-201ENST00000516998 103 ntBASIC1.74□□□□□ -2.13
MSX2P35548 AC026421.1-201ENST00000519101 163 ntBASIC1.74□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 225.5 ms