Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 RNU6-322P-201ENST00000516010 103 ntBASIC3.13□□□□□ -1.91
COL9A1P20849 SNORA4-201ENST00000584302 138 ntBASIC3.13□□□□□ -1.91
COL9A1P20849 AP000942.3-201ENST00000603702 160 ntBASIC3.13□□□□□ -1.91
COL9A1P20849 MIR622-201ENST00000638396 96 ntBASIC3.13□□□□□ -1.91
COL9A1P20849 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
COL9A1P20849 CPD-202ENST00000543464 4007 ntTSL 2 BASIC3.12□□□□□ -1.91
COL9A1P20849 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC3.12□□□□□ -1.91
COL9A1P20849 Y_RNA.12-201ENST00000362393 112 ntBASIC3.12□□□□□ -1.91
COL9A1P20849 RNA5SP325-201ENST00000363756 130 ntBASIC3.12□□□□□ -1.91
COL9A1P20849 RNA5SP48-201ENST00000363969 126 ntBASIC3.12□□□□□ -1.91
COL9A1P20849 RNU6-1241P-201ENST00000384536 107 ntBASIC3.12□□□□□ -1.91
COL9A1P20849 SNORD15B-201ENST00000384714 146 ntBASIC3.12□□□□□ -1.91
COL9A1P20849 MIR516A2-201ENST00000384888 90 ntBASIC3.12□□□□□ -1.91
COL9A1P20849 MIR516A1-201ENST00000385033 90 ntBASIC3.12□□□□□ -1.91
COL9A1P20849 AC093423.1-201ENST00000440817 142 ntBASIC3.12□□□□□ -1.91
COL9A1P20849 IGKV1OR2-6-201ENST00000603485 277 ntBASIC3.12□□□□□ -1.91
COL9A1P20849 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC3.12□□□□□ -1.91
COL9A1P20849 U7.8-201ENST00000619968 63 ntBASIC3.12□□□□□ -1.91
COL9A1P20849 MIR664A-201ENST00000626086 82 ntBASIC3.12□□□□□ -1.91
COL9A1P20849 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
COL9A1P20849 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
COL9A1P20849 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
COL9A1P20849 AC131280.1-202ENST00000624067 4211 ntBASIC3.12□□□□□ -1.91
COL9A1P20849 RNA5SP68-201ENST00000363885 119 ntBASIC3.11□□□□□ -1.91
COL9A1P20849 RNU1-138P-201ENST00000384093 164 ntBASIC3.11□□□□□ -1.91
COL9A1P20849 MIR518A2-201ENST00000384966 87 ntBASIC3.11□□□□□ -1.91
COL9A1P20849 MIR563-201ENST00000385080 79 ntBASIC3.11□□□□□ -1.91
COL9A1P20849 RNU6-663P-201ENST00000391105 106 ntBASIC3.11□□□□□ -1.91
COL9A1P20849 RNA5SP425-201ENST00000410336 112 ntBASIC3.11□□□□□ -1.91
COL9A1P20849 AC009474.2-201ENST00000451383 136 ntBASIC3.11□□□□□ -1.91
COL9A1P20849 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
COL9A1P20849 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC3.11□□□□□ -1.91
COL9A1P20849 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
COL9A1P20849 MIR22-201ENST00000362190 85 ntBASIC3.1□□□□□ -1.91
COL9A1P20849 MIR588-201ENST00000384900 83 ntBASIC3.1□□□□□ -1.91
COL9A1P20849 AC244023.1-201ENST00000426884 112 ntBASIC3.1□□□□□ -1.91
COL9A1P20849 AC092427.1-202ENST00000430569 476 ntBASIC3.1□□□□□ -1.91
COL9A1P20849 AC242498.1-201ENST00000604134 111 ntBASIC3.1□□□□□ -1.91
COL9A1P20849 MIR6817-201ENST00000615588 66 ntBASIC3.1□□□□□ -1.91
COL9A1P20849 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC3.1□□□□□ -1.91
COL9A1P20849 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
COL9A1P20849 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC3.09□□□□□ -1.91
COL9A1P20849 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
COL9A1P20849 SNORA8.1-201ENST00000384250 140 ntBASIC3.09□□□□□ -1.91
COL9A1P20849 RNU7-41P-201ENST00000515917 61 ntBASIC3.09□□□□□ -1.91
COL9A1P20849 NEAT1_2.1-201ENST00000620525 105 ntBASIC3.09□□□□□ -1.91
COL9A1P20849 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC3.09□□□□□ -1.91
COL9A1P20849 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC3.08□□□□□ -1.92
COL9A1P20849 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
COL9A1P20849 Y_RNA.36-201ENST00000362602 112 ntBASIC3.08□□□□□ -1.92
COL9A1P20849 MIR653-201ENST00000385279 96 ntBASIC3.08□□□□□ -1.92
COL9A1P20849 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC3.08□□□□□ -1.92
COL9A1P20849 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
COL9A1P20849 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC3.08□□□□□ -1.92
COL9A1P20849 MAPK10-266ENST00000641066 6555 ntBASIC3.08□□□□□ -1.92
COL9A1P20849 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC3.08□□□□□ -1.92
COL9A1P20849 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.07□□□□□ -1.92
COL9A1P20849 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
COL9A1P20849 RNU1-51P-201ENST00000365345 176 ntBASIC3.07□□□□□ -1.92
COL9A1P20849 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC3.07□□□□□ -1.92
COL9A1P20849 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
COL9A1P20849 MIR942-201ENST00000401111 86 ntBASIC3.07□□□□□ -1.92
COL9A1P20849 RNA5SP501-201ENST00000410990 112 ntBASIC3.07□□□□□ -1.92
COL9A1P20849 RNA5SP148-201ENST00000516527 94 ntBASIC3.07□□□□□ -1.92
COL9A1P20849 SCARNA20.6-201ENST00000517251 106 ntBASIC3.07□□□□□ -1.92
COL9A1P20849 U1.36-201ENST00000620684 176 ntBASIC3.07□□□□□ -1.92
COL9A1P20849 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
COL9A1P20849 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC3.06□□□□□ -1.92
COL9A1P20849 AC073325.2-201ENST00000339545 159 ntBASIC3.06□□□□□ -1.92
COL9A1P20849 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
COL9A1P20849 MIR337-201ENST00000362281 93 ntBASIC3.06□□□□□ -1.92
COL9A1P20849 RNU6-360P-201ENST00000390944 104 ntBASIC3.06□□□□□ -1.92
COL9A1P20849 SNORA31.15-201ENST00000516771 132 ntBASIC3.06□□□□□ -1.92
COL9A1P20849 RNA5SP480-201ENST00000516840 109 ntBASIC3.06□□□□□ -1.92
COL9A1P20849 AC104027.1-201ENST00000521887 300 ntBASIC3.06□□□□□ -1.92
COL9A1P20849 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC3.06□□□□□ -1.92
COL9A1P20849 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC3.05□□□□□ -1.92
COL9A1P20849 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
COL9A1P20849 MIRLET7F1-201ENST00000362202 87 ntBASIC3.05□□□□□ -1.92
COL9A1P20849 RNU6-859P-201ENST00000362728 107 ntBASIC3.05□□□□□ -1.92
COL9A1P20849 Z96811.1-201ENST00000445880 108 ntBASIC3.05□□□□□ -1.92
COL9A1P20849 RNU7-156P-201ENST00000517214 74 ntBASIC3.05□□□□□ -1.92
COL9A1P20849 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC3.05□□□□□ -1.92
COL9A1P20849 PRELID3BP2-201ENST00000605362 201 ntBASIC3.05□□□□□ -1.92
COL9A1P20849 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC3.05□□□□□ -1.92
COL9A1P20849 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC3.05□□□□□ -1.92
COL9A1P20849 AL161722.3-201ENST00000605789 2983 ntBASIC3.05□□□□□ -1.92
COL9A1P20849 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC3.05□□□□□ -1.92
COL9A1P20849 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC3.04□□□□□ -1.92
COL9A1P20849 Y_RNA.540-201ENST00000384638 111 ntBASIC3.04□□□□□ -1.92
COL9A1P20849 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC3.04□□□□□ -1.92
COL9A1P20849 AC244636.1-201ENST00000421152 228 ntBASIC3.04□□□□□ -1.92
COL9A1P20849 UQCRHP3-201ENST00000451503 251 ntBASIC3.04□□□□□ -1.92
COL9A1P20849 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC3.04□□□□□ -1.92
COL9A1P20849 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC3.04□□□□□ -1.92
COL9A1P20849 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
COL9A1P20849 MIR30D-201ENST00000362283 70 ntBASIC3.03□□□□□ -1.92
COL9A1P20849 SNORD115-31-201ENST00000365318 82 ntBASIC3.03□□□□□ -1.92
COL9A1P20849 RNU6-396P-201ENST00000365369 105 ntBASIC3.03□□□□□ -1.92
COL9A1P20849 Y_RNA.374-201ENST00000365606 101 ntBASIC3.03□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 177.8 ms