Protein–RNA interactions for Protein: A6NJ46

NKX6-3, Homeobox protein Nkx-6.3, humanhuman

Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX6-3A6NJ46 RNU6-42P-201ENST00000384165 107 ntBASIC0.64□□□□□ -2.31
NKX6-3A6NJ46 SNORA20-201ENST00000384662 132 ntBASIC0.64□□□□□ -2.31
NKX6-3A6NJ46 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.64□□□□□ -2.31
NKX6-3A6NJ46 RNU1-119P-201ENST00000391122 165 ntBASIC0.64□□□□□ -2.31
NKX6-3A6NJ46 AC244098.3-201ENST00000424803 96 ntBASIC0.64□□□□□ -2.31
NKX6-3A6NJ46 Z83818.1-201ENST00000603584 150 ntBASIC0.64□□□□□ -2.31
NKX6-3A6NJ46 RNU6-768P-201ENST00000384683 107 ntBASIC0.63□□□□□ -2.31
NKX6-3A6NJ46 RNA5SP237-201ENST00000410414 113 ntBASIC0.63□□□□□ -2.31
NKX6-3A6NJ46 RNA5SP261-201ENST00000410536 106 ntBASIC0.63□□□□□ -2.31
NKX6-3A6NJ46 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC0.63□□□□□ -2.31
NKX6-3A6NJ46 MIR4804-201ENST00000581683 73 ntBASIC0.63□□□□□ -2.31
NKX6-3A6NJ46 MIR6734-201ENST00000621166 68 ntBASIC0.63□□□□□ -2.31
NKX6-3A6NJ46 Y_RNA.118-201ENST00000363300 101 ntBASIC0.62□□□□□ -2.31
NKX6-3A6NJ46 Y_RNA.233-201ENST00000364407 101 ntBASIC0.62□□□□□ -2.31
NKX6-3A6NJ46 RNU6-1082P-201ENST00000364574 107 ntBASIC0.62□□□□□ -2.31
NKX6-3A6NJ46 RNY1P8-201ENST00000383970 114 ntBASIC0.62□□□□□ -2.31
NKX6-3A6NJ46 Y_RNA.515-201ENST00000384535 112 ntBASIC0.62□□□□□ -2.31
NKX6-3A6NJ46 MIR489-201ENST00000384923 84 ntBASIC0.62□□□□□ -2.31
NKX6-3A6NJ46 MIR624-201ENST00000385217 97 ntBASIC0.62□□□□□ -2.31
NKX6-3A6NJ46 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.62□□□□□ -2.31
NKX6-3A6NJ46 MIR1257-201ENST00000408490 117 ntBASIC0.62□□□□□ -2.31
NKX6-3A6NJ46 RNU7-185P-201ENST00000459215 60 ntBASIC0.62□□□□□ -2.31
NKX6-3A6NJ46 SCARNA15-202ENST00000516881 127 ntBASIC0.62□□□□□ -2.31
NKX6-3A6NJ46 MIR3152-201ENST00000579801 74 ntBASIC0.62□□□□□ -2.31
NKX6-3A6NJ46 MIR4431-201ENST00000579990 94 ntBASIC0.62□□□□□ -2.31
NKX6-3A6NJ46 AC021613.1-201ENST00000623880 111 ntBASIC0.62□□□□□ -2.31
NKX6-3A6NJ46 SNORA22.1-201ENST00000362701 134 ntBASIC0.61□□□□□ -2.31
NKX6-3A6NJ46 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.61□□□□□ -2.31
NKX6-3A6NJ46 RNU6-364P-201ENST00000384387 107 ntBASIC0.61□□□□□ -2.31
NKX6-3A6NJ46 RNU6-1319P-201ENST00000390855 104 ntBASIC0.61□□□□□ -2.31
NKX6-3A6NJ46 RNU6-747P-201ENST00000390928 104 ntBASIC0.61□□□□□ -2.31
NKX6-3A6NJ46 snosnR66.1-201ENST00000391095 99 ntBASIC0.61□□□□□ -2.31
NKX6-3A6NJ46 RNU6-241P-201ENST00000391148 104 ntBASIC0.61□□□□□ -2.31
NKX6-3A6NJ46 Y_RNA.793-201ENST00000411222 111 ntBASIC0.61□□□□□ -2.31
NKX6-3A6NJ46 RNU6-177P-201ENST00000411257 104 ntBASIC0.61□□□□□ -2.31
NKX6-3A6NJ46 RPL39P25-201ENST00000449384 154 ntBASIC0.61□□□□□ -2.31
NKX6-3A6NJ46 MIR18B-201ENST00000454574 71 ntBASIC0.61□□□□□ -2.31
NKX6-3A6NJ46 Y_RNA.644-201ENST00000459006 113 ntBASIC0.61□□□□□ -2.31
NKX6-3A6NJ46 Y_RNA.674-201ENST00000516362 113 ntBASIC0.61□□□□□ -2.31
NKX6-3A6NJ46 MIR5000-201ENST00000577717 103 ntBASIC0.61□□□□□ -2.31
NKX6-3A6NJ46 5S_rRNA.15-201ENST00000611169 127 ntBASIC0.61□□□□□ -2.31
NKX6-3A6NJ46 MIR7111-201ENST00000619751 72 ntBASIC0.61□□□□□ -2.31
NKX6-3A6NJ46 MIR30D-201ENST00000362283 70 ntBASIC0.6□□□□□ -2.31
NKX6-3A6NJ46 Y_RNA.393-201ENST00000383936 102 ntBASIC0.6□□□□□ -2.31
NKX6-3A6NJ46 MIR938-201ENST00000401216 83 ntBASIC0.6□□□□□ -2.31
NKX6-3A6NJ46 RNU6ATAC23P-201ENST00000408448 123 ntBASIC0.6□□□□□ -2.31
NKX6-3A6NJ46 RNU6-733P-201ENST00000410759 104 ntBASIC0.6□□□□□ -2.31
NKX6-3A6NJ46 AC107027.2-201ENST00000512197 115 ntBASIC0.6□□□□□ -2.31
NKX6-3A6NJ46 AC133485.1-201ENST00000567176 124 ntBASIC0.6□□□□□ -2.31
NKX6-3A6NJ46 AC138907.6-201ENST00000568401 126 ntBASIC0.6□□□□□ -2.31
NKX6-3A6NJ46 AL590095.2-201ENST00000604136 117 ntBASIC0.6□□□□□ -2.31
NKX6-3A6NJ46 MIR6835-201ENST00000621552 64 ntBASIC0.6□□□□□ -2.31
NKX6-3A6NJ46 Y_RNA.52-201ENST00000362760 96 ntBASIC0.59□□□□□ -2.31
NKX6-3A6NJ46 Y_RNA.435-201ENST00000384095 112 ntBASIC0.59□□□□□ -2.31
NKX6-3A6NJ46 Y_RNA.476-201ENST00000384347 108 ntBASIC0.59□□□□□ -2.31
NKX6-3A6NJ46 Y_RNA.552-201ENST00000384665 112 ntBASIC0.59□□□□□ -2.31
NKX6-3A6NJ46 MIR508-201ENST00000384857 115 ntBASIC0.59□□□□□ -2.31
NKX6-3A6NJ46 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.59□□□□□ -2.31
NKX6-3A6NJ46 RNU6ATAC42P-201ENST00000408637 95 ntBASIC0.59□□□□□ -2.31
NKX6-3A6NJ46 SNORD93-201ENST00000408813 74 ntBASIC0.59□□□□□ -2.31
NKX6-3A6NJ46 MTND5P15-201ENST00000434246 349 ntBASIC0.59□□□□□ -2.31
NKX6-3A6NJ46 RNU7-156P-201ENST00000517214 74 ntBASIC0.59□□□□□ -2.31
NKX6-3A6NJ46 AP002392.1-201ENST00000537692 208 ntBASIC0.59□□□□□ -2.31
NKX6-3A6NJ46 AC008608.1-201ENST00000603910 127 ntBASIC0.59□□□□□ -2.31
NKX6-3A6NJ46 Y_RNA.357-201ENST00000365487 109 ntBASIC0.58□□□□□ -2.32
NKX6-3A6NJ46 MIR573-201ENST00000384964 99 ntBASIC0.58□□□□□ -2.32
NKX6-3A6NJ46 MIR563-201ENST00000385080 79 ntBASIC0.58□□□□□ -2.32
NKX6-3A6NJ46 MIR125B2-201ENST00000385128 89 ntBASIC0.58□□□□□ -2.32
NKX6-3A6NJ46 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.58□□□□□ -2.32
NKX6-3A6NJ46 RNU7-56P-201ENST00000458744 62 ntBASIC0.58□□□□□ -2.32
NKX6-3A6NJ46 RNU7-102P-201ENST00000458948 62 ntBASIC0.58□□□□□ -2.32
NKX6-3A6NJ46 COX6CP6-201ENST00000490840 228 ntBASIC0.58□□□□□ -2.32
NKX6-3A6NJ46 AC141273.2-201ENST00000618989 130 ntBASIC0.58□□□□□ -2.32
NKX6-3A6NJ46 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.58□□□□□ -2.32
NKX6-3A6NJ46 AL589743.1-201ENST00000551932 2712 ntBASIC0.58□□□□□ -2.32
NKX6-3A6NJ46 Y_RNA.171-201ENST00000363760 102 ntBASIC0.57□□□□□ -2.32
NKX6-3A6NJ46 RNU6-312P-201ENST00000364629 107 ntBASIC0.57□□□□□ -2.32
NKX6-3A6NJ46 RNU6-818P-201ENST00000364837 108 ntBASIC0.57□□□□□ -2.32
NKX6-3A6NJ46 Y_RNA.337-201ENST00000365312 102 ntBASIC0.57□□□□□ -2.32
NKX6-3A6NJ46 RNU6-110P-201ENST00000384508 104 ntBASIC0.57□□□□□ -2.32
NKX6-3A6NJ46 SNORD37.2-201ENST00000391075 66 ntBASIC0.57□□□□□ -2.32
NKX6-3A6NJ46 RNU6-588P-201ENST00000410281 105 ntBASIC0.57□□□□□ -2.32
NKX6-3A6NJ46 RNU6-447P-201ENST00000410293 104 ntBASIC0.57□□□□□ -2.32
NKX6-3A6NJ46 RNU6-1118P-201ENST00000410382 104 ntBASIC0.57□□□□□ -2.32
NKX6-3A6NJ46 RNU6-1076P-201ENST00000410397 104 ntBASIC0.57□□□□□ -2.32
NKX6-3A6NJ46 RNU6-355P-201ENST00000410427 104 ntBASIC0.57□□□□□ -2.32
NKX6-3A6NJ46 RNU6-791P-201ENST00000410467 104 ntBASIC0.57□□□□□ -2.32
NKX6-3A6NJ46 RNU6-705P-201ENST00000410601 104 ntBASIC0.57□□□□□ -2.32
NKX6-3A6NJ46 RNU6-1100P-201ENST00000410691 104 ntBASIC0.57□□□□□ -2.32
NKX6-3A6NJ46 RNU6-860P-201ENST00000410860 104 ntBASIC0.57□□□□□ -2.32
NKX6-3A6NJ46 RNU6-1217P-201ENST00000411276 104 ntBASIC0.57□□□□□ -2.32
NKX6-3A6NJ46 RNU6-785P-201ENST00000411324 104 ntBASIC0.57□□□□□ -2.32
NKX6-3A6NJ46 RNU6-138P-201ENST00000515952 107 ntBASIC0.57□□□□□ -2.32
NKX6-3A6NJ46 AC107958.3-201ENST00000553410 431 ntTSL 3 BASIC0.57□□□□□ -2.32
NKX6-3A6NJ46 MIR3612-201ENST00000579753 87 ntBASIC0.57□□□□□ -2.32
NKX6-3A6NJ46 MIR4714-201ENST00000580728 77 ntBASIC0.57□□□□□ -2.32
NKX6-3A6NJ46 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC0.57□□□□□ -2.32
NKX6-3A6NJ46 U6.90-201ENST00000614007 104 ntBASIC0.57□□□□□ -2.32
NKX6-3A6NJ46 AL662814.1-201ENST00000617364 121 ntBASIC0.57□□□□□ -2.32
NKX6-3A6NJ46 U6.70-201ENST00000620287 104 ntBASIC0.57□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 181.9 ms