Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 Y_RNA.53-201ENST00000362765 102 ntBASIC-2.8□□□□□ -2.86
CCDC88BA6NC98 Y_RNA.71-201ENST00000362892 104 ntBASIC-2.8□□□□□ -2.86
CCDC88BA6NC98 SNORD114-4-201ENST00000363962 75 ntBASIC-2.8□□□□□ -2.86
CCDC88BA6NC98 RNU6-501P-201ENST00000364072 100 ntBASIC-2.8□□□□□ -2.86
CCDC88BA6NC98 Y_RNA.358-201ENST00000365491 99 ntBASIC-2.8□□□□□ -2.86
CCDC88BA6NC98 Y_RNA.446-201ENST00000384178 104 ntBASIC-2.8□□□□□ -2.86
CCDC88BA6NC98 RNU7-80P-201ENST00000459562 61 ntBASIC-2.8□□□□□ -2.86
CCDC88BA6NC98 ACA59.1-201ENST00000515966 143 ntBASIC-2.8□□□□□ -2.86
CCDC88BA6NC98 MIR6888-201ENST00000621977 67 ntBASIC-2.8□□□□□ -2.86
CCDC88BA6NC98 Y_RNA.353-201ENST00000365440 108 ntBASIC-2.81□□□□□ -2.86
CCDC88BA6NC98 RNY3P14-201ENST00000384309 102 ntBASIC-2.81□□□□□ -2.86
CCDC88BA6NC98 AC008568.1-203ENST00000433406 765 ntTSL 3 BASIC-2.81□□□□□ -2.86
CCDC88BA6NC98 RNU7-87P-201ENST00000459343 62 ntBASIC-2.81□□□□□ -2.86
CCDC88BA6NC98 RNU7-137P-201ENST00000516788 62 ntBASIC-2.81□□□□□ -2.86
CCDC88BA6NC98 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC-2.81□□□□□ -2.86
CCDC88BA6NC98 AC022878.1-201ENST00000530684 149 ntBASIC-2.81□□□□□ -2.86
CCDC88BA6NC98 Y_RNA.162-201ENST00000363683 102 ntBASIC-2.82□□□□□ -2.86
CCDC88BA6NC98 Y_RNA.491-201ENST00000384417 107 ntBASIC-2.82□□□□□ -2.86
CCDC88BA6NC98 Y_RNA.529-201ENST00000384586 119 ntBASIC-2.82□□□□□ -2.86
CCDC88BA6NC98 UBE2V1P7-201ENST00000446395 340 ntBASIC-2.82□□□□□ -2.86
CCDC88BA6NC98 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC-2.82□□□□□ -2.86
CCDC88BA6NC98 MTATP6P24-201ENST00000576835 677 ntBASIC-2.82□□□□□ -2.86
CCDC88BA6NC98 MIR4464-201ENST00000580818 92 ntBASIC-2.82□□□□□ -2.86
CCDC88BA6NC98 AL158211.2-201ENST00000607282 395 ntBASIC-2.82□□□□□ -2.86
CCDC88BA6NC98 AC092954.2-201ENST00000609103 430 ntBASIC-2.82□□□□□ -2.86
CCDC88BA6NC98 Y_RNA.315-201ENST00000365117 102 ntBASIC-2.83□□□□□ -2.86
CCDC88BA6NC98 RNU6-155P-201ENST00000516347 100 ntBASIC-2.83□□□□□ -2.86
CCDC88BA6NC98 RNU6-1006P-201ENST00000516998 103 ntBASIC-2.83□□□□□ -2.86
CCDC88BA6NC98 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC-2.83□□□□□ -2.86
CCDC88BA6NC98 AL359881.1-201ENST00000602916 267 ntBASIC-2.83□□□□□ -2.86
CCDC88BA6NC98 Evf-2_5p.1-201ENST00000614213 142 ntBASIC-2.83□□□□□ -2.86
CCDC88BA6NC98 AC021613.1-201ENST00000623880 111 ntBASIC-2.83□□□□□ -2.86
CCDC88BA6NC98 SNORD114-10-201ENST00000363409 72 ntBASIC-2.84□□□□□ -2.86
CCDC88BA6NC98 RNU6-1163P-201ENST00000364516 107 ntBASIC-2.84□□□□□ -2.86
CCDC88BA6NC98 RNY4P34-201ENST00000364779 95 ntBASIC-2.84□□□□□ -2.86
CCDC88BA6NC98 Y_RNA.557-201ENST00000384680 107 ntBASIC-2.84□□□□□ -2.86
CCDC88BA6NC98 MTATP6P19-201ENST00000413797 659 ntBASIC-2.84□□□□□ -2.86
CCDC88BA6NC98 AC018880.2-201ENST00000414265 201 ntBASIC-2.84□□□□□ -2.86
CCDC88BA6NC98 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC-2.84□□□□□ -2.86
CCDC88BA6NC98 CCDC34P1-201ENST00000507441 517 ntBASIC-2.84□□□□□ -2.86
CCDC88BA6NC98 RNU6-397P-201ENST00000516226 104 ntBASIC-2.84□□□□□ -2.86
CCDC88BA6NC98 RNA5SP93-201ENST00000362525 114 ntBASIC-2.84□□□□□ -2.86
CCDC88BA6NC98 SNORD113-7-201ENST00000363762 77 ntBASIC-2.84□□□□□ -2.86
CCDC88BA6NC98 RNU6-961P-201ENST00000363893 105 ntBASIC-2.84□□□□□ -2.86
CCDC88BA6NC98 MT-TM-201ENST00000387377 68 ntBASIC-2.84□□□□□ -2.86
CCDC88BA6NC98 RNU2-66P-201ENST00000410650 161 ntBASIC-2.84□□□□□ -2.86
CCDC88BA6NC98 RNU6-195P-201ENST00000411352 109 ntBASIC-2.84□□□□□ -2.86
CCDC88BA6NC98 AL353691.2-201ENST00000443795 59 ntBASIC-2.84□□□□□ -2.86
CCDC88BA6NC98 RNU6-1333P-201ENST00000516162 93 ntBASIC-2.84□□□□□ -2.86
CCDC88BA6NC98 AC144568.1-201ENST00000520139 137 ntBASIC-2.84□□□□□ -2.86
CCDC88BA6NC98 AC124303.1-201ENST00000605703 360 ntBASIC-2.84□□□□□ -2.86
CCDC88BA6NC98 AL121895.2-201ENST00000619558 447 ntBASIC-2.84□□□□□ -2.86
CCDC88BA6NC98 AC091932.4-201ENST00000623386 200 ntBASIC-2.84□□□□□ -2.86
CCDC88BA6NC98 Y_RNA.207-201ENST00000364142 106 ntBASIC-2.85□□□□□ -2.87
CCDC88BA6NC98 RNU6-893P-201ENST00000458841 100 ntBASIC-2.85□□□□□ -2.87
CCDC88BA6NC98 RNU7-180P-201ENST00000459240 63 ntBASIC-2.85□□□□□ -2.87
CCDC88BA6NC98 SEPT14P4-201ENST00000513445 186 ntBASIC-2.85□□□□□ -2.87
CCDC88BA6NC98 RNU6-1038P-201ENST00000516516 104 ntBASIC-2.85□□□□□ -2.87
CCDC88BA6NC98 RNU1-54P-201ENST00000517181 120 ntBASIC-2.85□□□□□ -2.87
CCDC88BA6NC98 AC092378.2-202ENST00000569328 445 ntTSL 3 BASIC-2.85□□□□□ -2.87
CCDC88BA6NC98 RNU6-170P-201ENST00000362832 104 ntBASIC-2.86□□□□□ -2.87
CCDC88BA6NC98 Y_RNA.454-201ENST00000384224 113 ntBASIC-2.86□□□□□ -2.87
CCDC88BA6NC98 RNU6-517P-201ENST00000384362 110 ntBASIC-2.86□□□□□ -2.87
CCDC88BA6NC98 SNORD12B-201ENST00000410433 91 ntBASIC-2.86□□□□□ -2.87
CCDC88BA6NC98 ELOCP20-201ENST00000422460 345 ntBASIC-2.86□□□□□ -2.87
CCDC88BA6NC98 MIR4273-201ENST00000582824 84 ntBASIC-2.86□□□□□ -2.87
CCDC88BA6NC98 AC092747.3-201ENST00000603769 301 ntBASIC-2.86□□□□□ -2.87
CCDC88BA6NC98 AC099654.13-201ENST00000639774 207 ntBASIC-2.86□□□□□ -2.87
CCDC88BA6NC98 SNORD115-22-201ENST00000364456 82 ntBASIC-2.87□□□□□ -2.87
CCDC88BA6NC98 RNU6-128P-201ENST00000383976 107 ntBASIC-2.87□□□□□ -2.87
CCDC88BA6NC98 Y_RNA.564-201ENST00000384708 106 ntBASIC-2.87□□□□□ -2.87
CCDC88BA6NC98 AC009480.1-201ENST00000402410 412 ntTSL 3 BASIC-2.87□□□□□ -2.87
CCDC88BA6NC98 AC006504.6-201ENST00000590142 199 ntBASIC-2.87□□□□□ -2.87
CCDC88BA6NC98 FGF7P2-201ENST00000332473 296 ntBASIC-2.88□□□□□ -2.87
CCDC88BA6NC98 Y_RNA.171-201ENST00000363760 102 ntBASIC-2.88□□□□□ -2.87
CCDC88BA6NC98 Y_RNA.211-201ENST00000364164 101 ntBASIC-2.88□□□□□ -2.87
CCDC88BA6NC98 SNORA32-201ENST00000384072 121 ntBASIC-2.88□□□□□ -2.87
CCDC88BA6NC98 Y_RNA.461-201ENST00000384263 103 ntBASIC-2.88□□□□□ -2.87
CCDC88BA6NC98 MIR181A1-201ENST00000385026 110 ntBASIC-2.88□□□□□ -2.87
CCDC88BA6NC98 AL590004.1-201ENST00000405321 300 ntBASIC-2.88□□□□□ -2.87
CCDC88BA6NC98 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC-2.88□□□□□ -2.87
CCDC88BA6NC98 AP001542.1-201ENST00000591314 200 ntBASIC-2.88□□□□□ -2.87
CCDC88BA6NC98 AC005014.3-201ENST00000605985 190 ntBASIC-2.88□□□□□ -2.87
CCDC88BA6NC98 MIR548O2-201ENST00000616090 70 ntBASIC-2.88□□□□□ -2.87
CCDC88BA6NC98 RNU6-79P-201ENST00000362511 107 ntBASIC-2.89□□□□□ -2.87
CCDC88BA6NC98 Y_RNA.91-201ENST00000363042 107 ntBASIC-2.89□□□□□ -2.87
CCDC88BA6NC98 Y_RNA.340-201ENST00000365330 92 ntBASIC-2.89□□□□□ -2.87
CCDC88BA6NC98 Y_RNA.421-201ENST00000384052 101 ntBASIC-2.89□□□□□ -2.87
CCDC88BA6NC98 AL606923.1-201ENST00000406616 190 ntBASIC-2.89□□□□□ -2.87
CCDC88BA6NC98 Y_RNA.596-201ENST00000410462 109 ntBASIC-2.89□□□□□ -2.87
CCDC88BA6NC98 RNU6-365P-201ENST00000517113 106 ntBASIC-2.89□□□□□ -2.87
CCDC88BA6NC98 RNU6-522P-201ENST00000364497 107 ntBASIC-2.9□□□□□ -2.87
CCDC88BA6NC98 RNU6-695P-201ENST00000391157 104 ntBASIC-2.9□□□□□ -2.87
CCDC88BA6NC98 MIR190B-201ENST00000401119 79 ntBASIC-2.9□□□□□ -2.87
CCDC88BA6NC98 AC090616.4-201ENST00000448026 115 ntBASIC-2.9□□□□□ -2.87
CCDC88BA6NC98 ELOCP32-201ENST00000548625 324 ntBASIC-2.9□□□□□ -2.87
CCDC88BA6NC98 AL118558.2-201ENST00000556294 238 ntBASIC-2.9□□□□□ -2.87
CCDC88BA6NC98 MIR4490-201ENST00000582647 84 ntBASIC-2.9□□□□□ -2.87
CCDC88BA6NC98 AC084781.2-201ENST00000615568 161 ntBASIC-2.9□□□□□ -2.87
CCDC88BA6NC98 RNU6-888P-201ENST00000363010 101 ntBASIC-2.9□□□□□ -2.87
Retrieved 100 of 98,524 protein–RNA pairs in 163.8 ms