Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 RNU6-180P-201ENST00000516697 61 ntBASIC-0.37□□□□□ -2.47
VCX3AQ9NNX9 RNU2-60P-201ENST00000517290 128 ntBASIC-0.37□□□□□ -2.47
VCX3AQ9NNX9 MIR5688-201ENST00000580619 83 ntBASIC-0.37□□□□□ -2.47
VCX3AQ9NNX9 MIR4305-201ENST00000583252 102 ntBASIC-0.37□□□□□ -2.47
VCX3AQ9NNX9 U7.6-201ENST00000610841 64 ntBASIC-0.37□□□□□ -2.47
VCX3AQ9NNX9 Y_RNA.49-201ENST00000362714 112 ntBASIC-0.38□□□□□ -2.47
VCX3AQ9NNX9 RNU6-46P-201ENST00000383860 107 ntBASIC-0.38□□□□□ -2.47
VCX3AQ9NNX9 Y_RNA.432-201ENST00000384087 111 ntBASIC-0.38□□□□□ -2.47
VCX3AQ9NNX9 Y_RNA.445-201ENST00000384168 102 ntBASIC-0.38□□□□□ -2.47
VCX3AQ9NNX9 Y_RNA.454-201ENST00000384224 113 ntBASIC-0.38□□□□□ -2.47
VCX3AQ9NNX9 RNU6-662P-201ENST00000384253 104 ntBASIC-0.38□□□□□ -2.47
VCX3AQ9NNX9 MIR518E-201ENST00000385252 88 ntBASIC-0.38□□□□□ -2.47
VCX3AQ9NNX9 MIR548L-201ENST00000408303 86 ntBASIC-0.38□□□□□ -2.47
VCX3AQ9NNX9 RNU2-55P-201ENST00000411146 174 ntBASIC-0.38□□□□□ -2.47
VCX3AQ9NNX9 RNU6-976P-201ENST00000516086 111 ntBASIC-0.38□□□□□ -2.47
VCX3AQ9NNX9 RNA5SP153-201ENST00000516498 76 ntBASIC-0.38□□□□□ -2.47
VCX3AQ9NNX9 RNU6-531P-201ENST00000516694 104 ntBASIC-0.38□□□□□ -2.47
VCX3AQ9NNX9 DEFB131E-201ENST00000532329 154 ntBASIC-0.38□□□□□ -2.47
VCX3AQ9NNX9 MIR378D2-201ENST00000580636 98 ntBASIC-0.38□□□□□ -2.47
VCX3AQ9NNX9 MIR4677-201ENST00000584153 80 ntBASIC-0.38□□□□□ -2.47
VCX3AQ9NNX9 MIR3925-201ENST00000584674 77 ntBASIC-0.38□□□□□ -2.47
VCX3AQ9NNX9 AL670379.3-201ENST00000605040 251 ntBASIC-0.38□□□□□ -2.47
VCX3AQ9NNX9 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC-0.38□□□□□ -2.47
VCX3AQ9NNX9 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC-0.38□□□□□ -2.47
VCX3AQ9NNX9 MIR6514-201ENST00000622549 70 ntBASIC-0.38□□□□□ -2.47
VCX3AQ9NNX9 SNORA25.1-201ENST00000362326 128 ntBASIC-0.39□□□□□ -2.47
VCX3AQ9NNX9 Y_RNA.24-201ENST00000362508 103 ntBASIC-0.39□□□□□ -2.47
VCX3AQ9NNX9 RNU4-58P-201ENST00000363192 141 ntBASIC-0.39□□□□□ -2.47
VCX3AQ9NNX9 Y_RNA.217-201ENST00000364214 105 ntBASIC-0.39□□□□□ -2.47
VCX3AQ9NNX9 RNU6-290P-201ENST00000365212 101 ntBASIC-0.39□□□□□ -2.47
VCX3AQ9NNX9 SNORA22B-201ENST00000383876 138 ntBASIC-0.39□□□□□ -2.47
VCX3AQ9NNX9 RNY1P4-201ENST00000384595 115 ntBASIC-0.39□□□□□ -2.47
VCX3AQ9NNX9 Y_RNA.572-201ENST00000384757 98 ntBASIC-0.39□□□□□ -2.47
VCX3AQ9NNX9 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC-0.39□□□□□ -2.47
VCX3AQ9NNX9 SNORD115-46-201ENST00000390982 71 ntBASIC-0.39□□□□□ -2.47
VCX3AQ9NNX9 Y_RNA.581-201ENST00000391017 97 ntBASIC-0.39□□□□□ -2.47
VCX3AQ9NNX9 SNORA75.1-201ENST00000391130 148 ntBASIC-0.39□□□□□ -2.47
VCX3AQ9NNX9 RNU5E-9P-201ENST00000411164 104 ntBASIC-0.39□□□□□ -2.47
VCX3AQ9NNX9 AC244505.6-201ENST00000452829 130 ntBASIC-0.39□□□□□ -2.47
VCX3AQ9NNX9 MTND4LP30-201ENST00000454092 297 ntBASIC-0.39□□□□□ -2.47
VCX3AQ9NNX9 Y_RNA.641-201ENST00000459414 105 ntBASIC-0.39□□□□□ -2.47
VCX3AQ9NNX9 SCARNA11.2-201ENST00000517183 154 ntBASIC-0.39□□□□□ -2.47
VCX3AQ9NNX9 AC021613.1-201ENST00000623880 111 ntBASIC-0.39□□□□□ -2.47
VCX3AQ9NNX9 Y_RNA.23-201ENST00000362496 106 ntBASIC-0.4□□□□□ -2.47
VCX3AQ9NNX9 Y_RNA.154-201ENST00000363624 102 ntBASIC-0.4□□□□□ -2.47
VCX3AQ9NNX9 RNU6-702P-201ENST00000364982 107 ntBASIC-0.4□□□□□ -2.47
VCX3AQ9NNX9 SNORA8.3-201ENST00000384679 139 ntBASIC-0.4□□□□□ -2.47
VCX3AQ9NNX9 MIR1287-201ENST00000408492 90 ntBASIC-0.4□□□□□ -2.47
VCX3AQ9NNX9 RNU6-1086P-201ENST00000410930 100 ntBASIC-0.4□□□□□ -2.47
VCX3AQ9NNX9 AC098614.3-201ENST00000438957 440 ntBASIC-0.4□□□□□ -2.47
VCX3AQ9NNX9 AL731563.1-201ENST00000442202 214 ntBASIC-0.4□□□□□ -2.47
VCX3AQ9NNX9 RNU7-161P-201ENST00000517289 62 ntBASIC-0.4□□□□□ -2.47
VCX3AQ9NNX9 AC138749.4-201ENST00000563970 127 ntBASIC-0.4□□□□□ -2.47
VCX3AQ9NNX9 AL360085.1-201ENST00000604713 532 ntBASIC-0.4□□□□□ -2.47
VCX3AQ9NNX9 uc_338.28-201ENST00000612082 187 ntBASIC-0.4□□□□□ -2.47
VCX3AQ9NNX9 AC112487.2-201ENST00000637950 304 ntBASIC-0.4□□□□□ -2.47
VCX3AQ9NNX9 MIR148A-201ENST00000362215 68 ntBASIC-0.41□□□□□ -2.48
VCX3AQ9NNX9 RNA5SP133-201ENST00000363368 119 ntBASIC-0.41□□□□□ -2.48
VCX3AQ9NNX9 Y_RNA.248-201ENST00000364501 109 ntBASIC-0.41□□□□□ -2.48
VCX3AQ9NNX9 RNU5E-4P-201ENST00000364931 120 ntBASIC-0.41□□□□□ -2.48
VCX3AQ9NNX9 Y_RNA.393-201ENST00000383936 102 ntBASIC-0.41□□□□□ -2.48
VCX3AQ9NNX9 Y_RNA.394-201ENST00000383942 103 ntBASIC-0.41□□□□□ -2.48
VCX3AQ9NNX9 Y_RNA.542-201ENST00000384641 111 ntBASIC-0.41□□□□□ -2.48
VCX3AQ9NNX9 MIR106A-201ENST00000384870 81 ntBASIC-0.41□□□□□ -2.48
VCX3AQ9NNX9 Y_RNA.632-201ENST00000459189 102 ntBASIC-0.41□□□□□ -2.48
VCX3AQ9NNX9 RNU7-104P-201ENST00000459398 79 ntBASIC-0.41□□□□□ -2.48
VCX3AQ9NNX9 SNORD19B-201ENST00000459623 84 ntBASIC-0.41□□□□□ -2.48
VCX3AQ9NNX9 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC-0.41□□□□□ -2.48
VCX3AQ9NNX9 CR383656.4-201ENST00000546909 122 ntBASIC-0.41□□□□□ -2.48
VCX3AQ9NNX9 MIR3129-201ENST00000581095 76 ntBASIC-0.41□□□□□ -2.48
VCX3AQ9NNX9 DLEU2_5.2-201ENST00000610606 84 ntBASIC-0.41□□□□□ -2.48
VCX3AQ9NNX9 AL132765.2-201ENST00000610812 351 ntBASIC-0.41□□□□□ -2.48
VCX3AQ9NNX9 AC006157.1-201ENST00000611750 366 ntBASIC-0.41□□□□□ -2.48
VCX3AQ9NNX9 AC093783.1-201ENST00000612976 329 ntBASIC-0.41□□□□□ -2.48
VCX3AQ9NNX9 snoU18.1-201ENST00000629629 71 ntBASIC-0.41□□□□□ -2.48
VCX3AQ9NNX9 AC073869.9-201ENST00000641610 120 ntBASIC-0.41□□□□□ -2.48
VCX3AQ9NNX9 MIR101-2-201ENST00000362195 79 ntBASIC-0.42□□□□□ -2.48
VCX3AQ9NNX9 Y_RNA.142-201ENST00000363491 102 ntBASIC-0.42□□□□□ -2.48
VCX3AQ9NNX9 Y_RNA.183-201ENST00000363882 113 ntBASIC-0.42□□□□□ -2.48
VCX3AQ9NNX9 RNU6-1228P-201ENST00000391014 107 ntBASIC-0.42□□□□□ -2.48
VCX3AQ9NNX9 MIR1302-11-201ENST00000408051 138 ntBASIC-0.42□□□□□ -2.48
VCX3AQ9NNX9 MIR1302-9-201ENST00000408365 138 ntBASIC-0.42□□□□□ -2.48
VCX3AQ9NNX9 MIR1302-10-201ENST00000408734 138 ntBASIC-0.42□□□□□ -2.48
VCX3AQ9NNX9 Y_RNA.622-201ENST00000411091 108 ntBASIC-0.42□□□□□ -2.48
VCX3AQ9NNX9 AL358176.2-201ENST00000425769 204 ntBASIC-0.42□□□□□ -2.48
VCX3AQ9NNX9 RNU6-1265P-201ENST00000516342 103 ntBASIC-0.42□□□□□ -2.48
VCX3AQ9NNX9 RNU6-897P-201ENST00000517135 105 ntBASIC-0.42□□□□□ -2.48
VCX3AQ9NNX9 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC-0.42□□□□□ -2.48
VCX3AQ9NNX9 MIR1273G-201ENST00000577677 100 ntBASIC-0.42□□□□□ -2.48
VCX3AQ9NNX9 AC011825.2-201ENST00000583138 553 ntTSL 4 BASIC-0.42□□□□□ -2.48
VCX3AQ9NNX9 MIR1302-2-201ENST00000607096 138 ntBASIC-0.42□□□□□ -2.48
VCX3AQ9NNX9 MIR3666-201ENST00000607845 111 ntBASIC-0.42□□□□□ -2.48
VCX3AQ9NNX9 MIR8087-201ENST00000612745 78 ntBASIC-0.42□□□□□ -2.48
VCX3AQ9NNX9 U6.109-201ENST00000636749 87 ntBASIC-0.42□□□□□ -2.48
VCX3AQ9NNX9 MTND5P32-201ENST00000560711 1802 ntBASIC-0.43□□□□□ -2.48
VCX3AQ9NNX9 Y_RNA.105-201ENST00000363182 111 ntBASIC-0.43□□□□□ -2.48
VCX3AQ9NNX9 Y_RNA.122-201ENST00000363331 96 ntBASIC-0.43□□□□□ -2.48
VCX3AQ9NNX9 RNY1-201ENST00000364228 113 ntBASIC-0.43□□□□□ -2.48
VCX3AQ9NNX9 RNY3P5-201ENST00000384127 102 ntBASIC-0.43□□□□□ -2.48
VCX3AQ9NNX9 MIR626-201ENST00000385032 94 ntBASIC-0.43□□□□□ -2.48
Retrieved 100 of 98,524 protein–RNA pairs in 210.2 ms