Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 SNORD111-201ENST00000408139 94 ntBASIC0.94□□□□□ -2.26
ZNF541Q9H0D2 Y_RNA.618-201ENST00000410949 107 ntBASIC0.94□□□□□ -2.26
ZNF541Q9H0D2 snoU13.16-201ENST00000459350 104 ntBASIC0.94□□□□□ -2.26
ZNF541Q9H0D2 PDCD5P2-201ENST00000507570 312 ntBASIC0.94□□□□□ -2.26
ZNF541Q9H0D2 SNORA18.4-201ENST00000516440 124 ntBASIC0.94□□□□□ -2.26
ZNF541Q9H0D2 AC131055.1-201ENST00000584626 316 ntBASIC0.94□□□□□ -2.26
ZNF541Q9H0D2 AC078938.1-201ENST00000620993 318 ntBASIC0.94□□□□□ -2.26
ZNF541Q9H0D2 MIR6835-201ENST00000621552 64 ntBASIC0.94□□□□□ -2.26
ZNF541Q9H0D2 MIR376A2-201ENST00000636782 80 ntBASIC0.94□□□□□ -2.26
ZNF541Q9H0D2 MIR302B-201ENST00000362188 73 ntBASIC0.93□□□□□ -2.26
ZNF541Q9H0D2 Y_RNA.83-201ENST00000363005 113 ntBASIC0.93□□□□□ -2.26
ZNF541Q9H0D2 Y_RNA.121-201ENST00000363309 113 ntBASIC0.93□□□□□ -2.26
ZNF541Q9H0D2 Y_RNA.274-201ENST00000364714 101 ntBASIC0.93□□□□□ -2.26
ZNF541Q9H0D2 RNU6-1189P-201ENST00000383958 107 ntBASIC0.93□□□□□ -2.26
ZNF541Q9H0D2 SNORA24-201ENST00000384096 131 ntBASIC0.93□□□□□ -2.26
ZNF541Q9H0D2 Y_RNA.797-201ENST00000515977 94 ntBASIC0.93□□□□□ -2.26
ZNF541Q9H0D2 RNU7-53P-201ENST00000516705 60 ntBASIC0.93□□□□□ -2.26
ZNF541Q9H0D2 RNU6-388P-201ENST00000517012 105 ntBASIC0.93□□□□□ -2.26
ZNF541Q9H0D2 RNU6-389P-201ENST00000517048 105 ntBASIC0.93□□□□□ -2.26
ZNF541Q9H0D2 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC0.93□□□□□ -2.26
ZNF541Q9H0D2 MIR6516-201ENST00000630554 81 ntBASIC0.93□□□□□ -2.26
ZNF541Q9H0D2 AL589743.1-201ENST00000551932 2712 ntBASIC0.93□□□□□ -2.26
ZNF541Q9H0D2 AL391516.1-201ENST00000554380 2449 ntBASIC0.93□□□□□ -2.26
ZNF541Q9H0D2 Y_RNA.182-201ENST00000363880 111 ntBASIC0.92□□□□□ -2.26
ZNF541Q9H0D2 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC0.92□□□□□ -2.26
ZNF541Q9H0D2 SNORD89-201ENST00000390981 114 ntBASIC0.92□□□□□ -2.26
ZNF541Q9H0D2 SNORD77.3-201ENST00000391113 65 ntBASIC0.92□□□□□ -2.26
ZNF541Q9H0D2 AL138752.1-201ENST00000452964 351 ntBASIC0.92□□□□□ -2.26
ZNF541Q9H0D2 HAR1A.1-201ENST00000459583 118 ntBASIC0.92□□□□□ -2.26
ZNF541Q9H0D2 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC0.92□□□□□ -2.26
ZNF541Q9H0D2 AC004812.1-201ENST00000540773 146 ntBASIC0.92□□□□□ -2.26
ZNF541Q9H0D2 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC0.92□□□□□ -2.26
ZNF541Q9H0D2 AP000942.4-201ENST00000604811 241 ntBASIC0.92□□□□□ -2.26
ZNF541Q9H0D2 AC141273.2-201ENST00000618989 130 ntBASIC0.92□□□□□ -2.26
ZNF541Q9H0D2 U6.106-201ENST00000636360 105 ntBASIC0.92□□□□□ -2.26
ZNF541Q9H0D2 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.92□□□□□ -2.26
ZNF541Q9H0D2 RNU6-654P-201ENST00000364373 107 ntBASIC0.91□□□□□ -2.26
ZNF541Q9H0D2 Y_RNA.410-201ENST00000383992 113 ntBASIC0.91□□□□□ -2.26
ZNF541Q9H0D2 Y_RNA.412-201ENST00000384001 104 ntBASIC0.91□□□□□ -2.26
ZNF541Q9H0D2 RNU4-70P-201ENST00000384579 139 ntBASIC0.91□□□□□ -2.26
ZNF541Q9H0D2 RNU6ATAC23P-201ENST00000408448 123 ntBASIC0.91□□□□□ -2.26
ZNF541Q9H0D2 RNA5SP95-201ENST00000410319 137 ntBASIC0.91□□□□□ -2.26
ZNF541Q9H0D2 AL035398.1-201ENST00000430869 322 ntBASIC0.91□□□□□ -2.26
ZNF541Q9H0D2 AC022559.1-201ENST00000520905 205 ntBASIC0.91□□□□□ -2.26
ZNF541Q9H0D2 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.91□□□□□ -2.26
ZNF541Q9H0D2 RNU6-275P-201ENST00000364910 107 ntBASIC0.9□□□□□ -2.26
ZNF541Q9H0D2 SNORD38B-201ENST00000384690 67 ntBASIC0.9□□□□□ -2.26
ZNF541Q9H0D2 RPS29P24-201ENST00000486345 171 ntBASIC0.9□□□□□ -2.26
ZNF541Q9H0D2 MIR3129-201ENST00000581095 76 ntBASIC0.9□□□□□ -2.26
ZNF541Q9H0D2 Z83818.1-201ENST00000603584 150 ntBASIC0.9□□□□□ -2.26
ZNF541Q9H0D2 RNU6-94P-201ENST00000607728 107 ntBASIC0.9□□□□□ -2.26
ZNF541Q9H0D2 AL136317.1-201ENST00000612653 226 ntBASIC0.9□□□□□ -2.26
ZNF541Q9H0D2 AC106800.4-201ENST00000614905 153 ntBASIC0.9□□□□□ -2.26
ZNF541Q9H0D2 SNORD38B-202ENST00000625943 69 ntBASIC0.9□□□□□ -2.26
ZNF541Q9H0D2 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.9□□□□□ -2.27
ZNF541Q9H0D2 Y_RNA.75-201ENST00000362927 97 ntBASIC0.89□□□□□ -2.27
ZNF541Q9H0D2 SNORD114-2-201ENST00000363953 78 ntBASIC0.89□□□□□ -2.27
ZNF541Q9H0D2 RNU6-978P-201ENST00000364371 103 ntBASIC0.89□□□□□ -2.27
ZNF541Q9H0D2 Y_RNA.351-201ENST00000365436 96 ntBASIC0.89□□□□□ -2.27
ZNF541Q9H0D2 Y_RNA.435-201ENST00000384095 112 ntBASIC0.89□□□□□ -2.27
ZNF541Q9H0D2 Y_RNA.476-201ENST00000384347 108 ntBASIC0.89□□□□□ -2.27
ZNF541Q9H0D2 RNU6-913P-201ENST00000390913 95 ntBASIC0.89□□□□□ -2.27
ZNF541Q9H0D2 RPS3AP1-201ENST00000413190 320 ntBASIC0.89□□□□□ -2.27
ZNF541Q9H0D2 AC090844.1-201ENST00000422019 156 ntBASIC0.89□□□□□ -2.27
ZNF541Q9H0D2 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC0.89□□□□□ -2.27
ZNF541Q9H0D2 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC0.89□□□□□ -2.27
ZNF541Q9H0D2 ACA64.5-201ENST00000516207 127 ntBASIC0.89□□□□□ -2.27
ZNF541Q9H0D2 RNU7-70P-201ENST00000516941 66 ntBASIC0.89□□□□□ -2.27
ZNF541Q9H0D2 MIR378D2-201ENST00000580636 98 ntBASIC0.89□□□□□ -2.27
ZNF541Q9H0D2 DLEU2_5.2-201ENST00000610606 84 ntBASIC0.89□□□□□ -2.27
ZNF541Q9H0D2 MIR1-1-201ENST00000362147 71 ntBASIC0.89□□□□□ -2.27
ZNF541Q9H0D2 RNU6-643P-201ENST00000384018 107 ntBASIC0.89□□□□□ -2.27
ZNF541Q9H0D2 Y_RNA.440-201ENST00000384120 114 ntBASIC0.89□□□□□ -2.27
ZNF541Q9H0D2 RNU6-205P-201ENST00000390858 107 ntBASIC0.89□□□□□ -2.27
ZNF541Q9H0D2 RNU6ATAC33P-201ENST00000408647 126 ntBASIC0.89□□□□□ -2.27
ZNF541Q9H0D2 AL365205.2-201ENST00000594586 68 ntBASIC0.89□□□□□ -2.27
ZNF541Q9H0D2 RNU6-1020P-201ENST00000363684 107 ntBASIC0.88□□□□□ -2.27
ZNF541Q9H0D2 RNU6-1187P-201ENST00000364771 110 ntBASIC0.88□□□□□ -2.27
ZNF541Q9H0D2 Y_RNA.297-201ENST00000364950 91 ntBASIC0.88□□□□□ -2.27
ZNF541Q9H0D2 RNU6-125P-201ENST00000384505 107 ntBASIC0.88□□□□□ -2.27
ZNF541Q9H0D2 RNU2-11P-201ENST00000459191 187 ntBASIC0.88□□□□□ -2.27
ZNF541Q9H0D2 RNU6-351P-201ENST00000516097 100 ntBASIC0.88□□□□□ -2.27
ZNF541Q9H0D2 RNU6-1219P-201ENST00000516143 112 ntBASIC0.88□□□□□ -2.27
ZNF541Q9H0D2 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC0.87□□□□□ -2.27
ZNF541Q9H0D2 Y_RNA.233-201ENST00000364407 101 ntBASIC0.87□□□□□ -2.27
ZNF541Q9H0D2 SNORA1.1-201ENST00000364671 133 ntBASIC0.87□□□□□ -2.27
ZNF541Q9H0D2 Y_RNA.542-201ENST00000384641 111 ntBASIC0.87□□□□□ -2.27
ZNF541Q9H0D2 Y_RNA.552-201ENST00000384665 112 ntBASIC0.87□□□□□ -2.27
ZNF541Q9H0D2 MIR100-201ENST00000385259 80 ntBASIC0.87□□□□□ -2.27
ZNF541Q9H0D2 MIR1197-201ENST00000408818 88 ntBASIC0.87□□□□□ -2.27
ZNF541Q9H0D2 RNU6-613P-201ENST00000410412 108 ntBASIC0.87□□□□□ -2.27
ZNF541Q9H0D2 RNU7-73P-201ENST00000458743 63 ntBASIC0.87□□□□□ -2.27
ZNF541Q9H0D2 Y_RNA.644-201ENST00000459006 113 ntBASIC0.87□□□□□ -2.27
ZNF541Q9H0D2 U7.7-201ENST00000459276 60 ntBASIC0.87□□□□□ -2.27
ZNF541Q9H0D2 RNU7-96P-201ENST00000459535 64 ntBASIC0.87□□□□□ -2.27
ZNF541Q9H0D2 RNU6-998P-201ENST00000515894 101 ntBASIC0.87□□□□□ -2.27
ZNF541Q9H0D2 RNU6-138P-201ENST00000515952 107 ntBASIC0.87□□□□□ -2.27
ZNF541Q9H0D2 Y_RNA.674-201ENST00000516362 113 ntBASIC0.87□□□□□ -2.27
ZNF541Q9H0D2 SNORD116-25-201ENST00000516517 92 ntBASIC0.87□□□□□ -2.27
ZNF541Q9H0D2 MRPS18CP4-201ENST00000535821 231 ntBASIC0.87□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 220.6 ms