Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 Y_RNA.617-201ENST00000410920 90 ntBASIC0.12□□□□□ -2.39
CCDC40Q4G0X9 SNRPGP8-201ENST00000454064 226 ntBASIC0.12□□□□□ -2.39
CCDC40Q4G0X9 AC113195.1-201ENST00000579952 141 ntBASIC0.12□□□□□ -2.39
CCDC40Q4G0X9 AC097639.2-201ENST00000603159 172 ntBASIC0.12□□□□□ -2.39
CCDC40Q4G0X9 RNU6-653P-201ENST00000363074 106 ntBASIC0.11□□□□□ -2.39
CCDC40Q4G0X9 RNU6-1099P-201ENST00000363533 107 ntBASIC0.11□□□□□ -2.39
CCDC40Q4G0X9 Y_RNA.275-201ENST00000364726 110 ntBASIC0.11□□□□□ -2.39
CCDC40Q4G0X9 Y_RNA.351-201ENST00000365436 96 ntBASIC0.11□□□□□ -2.39
CCDC40Q4G0X9 SNORA22B-201ENST00000383876 138 ntBASIC0.11□□□□□ -2.39
CCDC40Q4G0X9 Y_RNA.527-201ENST00000384573 102 ntBASIC0.11□□□□□ -2.39
CCDC40Q4G0X9 Y_RNA.622-201ENST00000411091 108 ntBASIC0.11□□□□□ -2.39
CCDC40Q4G0X9 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC0.11□□□□□ -2.39
CCDC40Q4G0X9 SCARNA24.2-201ENST00000516968 130 ntBASIC0.11□□□□□ -2.39
CCDC40Q4G0X9 AC069113.3-201ENST00000521019 150 ntBASIC0.11□□□□□ -2.39
CCDC40Q4G0X9 AL662814.1-201ENST00000617364 121 ntBASIC0.11□□□□□ -2.39
CCDC40Q4G0X9 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC0.11□□□□□ -2.39
CCDC40Q4G0X9 AL160413.1-201ENST00000622780 310 ntBASIC0.11□□□□□ -2.39
CCDC40Q4G0X9 MIR376A2-201ENST00000636782 80 ntBASIC0.11□□□□□ -2.39
CCDC40Q4G0X9 MIR4315-1-201ENST00000636800 73 ntBASIC0.11□□□□□ -2.39
CCDC40Q4G0X9 MIR4315-2-201ENST00000640925 73 ntBASIC0.11□□□□□ -2.39
CCDC40Q4G0X9 Y_RNA.117-201ENST00000363294 101 ntBASIC0.1□□□□□ -2.39
CCDC40Q4G0X9 Y_RNA.152-201ENST00000363578 100 ntBASIC0.1□□□□□ -2.39
CCDC40Q4G0X9 Y_RNA.158-201ENST00000363651 101 ntBASIC0.1□□□□□ -2.39
CCDC40Q4G0X9 RNU6-597P-201ENST00000365620 102 ntBASIC0.1□□□□□ -2.39
CCDC40Q4G0X9 MIR644A-201ENST00000385262 94 ntBASIC0.1□□□□□ -2.39
CCDC40Q4G0X9 RNU6ATAC42P-201ENST00000408637 95 ntBASIC0.1□□□□□ -2.39
CCDC40Q4G0X9 RNA5SP237-201ENST00000410414 113 ntBASIC0.1□□□□□ -2.39
CCDC40Q4G0X9 AL358176.2-201ENST00000425769 204 ntBASIC0.1□□□□□ -2.39
CCDC40Q4G0X9 RPL39P25-201ENST00000449384 154 ntBASIC0.1□□□□□ -2.39
CCDC40Q4G0X9 MTND5P22-201ENST00000458380 195 ntBASIC0.1□□□□□ -2.39
CCDC40Q4G0X9 SNORA62.5-201ENST00000516634 120 ntBASIC0.1□□□□□ -2.39
CCDC40Q4G0X9 AP003327.1-201ENST00000529684 127 ntBASIC0.1□□□□□ -2.39
CCDC40Q4G0X9 Y_RNA.23-201ENST00000362496 106 ntBASIC0.09□□□□□ -2.4
CCDC40Q4G0X9 SNORD114-26-201ENST00000363543 72 ntBASIC0.09□□□□□ -2.4
CCDC40Q4G0X9 Y_RNA.430-201ENST00000384081 110 ntBASIC0.09□□□□□ -2.4
CCDC40Q4G0X9 RNU2-59P-201ENST00000410482 191 ntBASIC0.09□□□□□ -2.4
CCDC40Q4G0X9 AL512326.2-201ENST00000426359 151 ntBASIC0.09□□□□□ -2.4
CCDC40Q4G0X9 RNU7-80P-201ENST00000459562 61 ntBASIC0.09□□□□□ -2.4
CCDC40Q4G0X9 RNU6-469P-201ENST00000516253 101 ntBASIC0.09□□□□□ -2.4
CCDC40Q4G0X9 RNU6-1338P-201ENST00000516328 91 ntBASIC0.09□□□□□ -2.4
CCDC40Q4G0X9 Y_RNA.13-201ENST00000362403 112 ntBASIC0.08□□□□□ -2.4
CCDC40Q4G0X9 Y_RNA.128-201ENST00000363391 112 ntBASIC0.08□□□□□ -2.4
CCDC40Q4G0X9 Y_RNA.205-201ENST00000364128 113 ntBASIC0.08□□□□□ -2.4
CCDC40Q4G0X9 RNU6-1228P-201ENST00000391014 107 ntBASIC0.08□□□□□ -2.4
CCDC40Q4G0X9 Y_RNA.711-201ENST00000516993 102 ntBASIC0.08□□□□□ -2.4
CCDC40Q4G0X9 AC112693.2-201ENST00000556538 232 ntBASIC0.08□□□□□ -2.4
CCDC40Q4G0X9 MIR3152-201ENST00000579801 74 ntBASIC0.08□□□□□ -2.4
CCDC40Q4G0X9 AC023932.2-201ENST00000603176 175 ntBASIC0.08□□□□□ -2.4
CCDC40Q4G0X9 MIR6718-201ENST00000616153 80 ntBASIC0.08□□□□□ -2.4
CCDC40Q4G0X9 snoU2_19.4-201ENST00000364329 80 ntBASIC0.07□□□□□ -2.4
CCDC40Q4G0X9 RNU5E-4P-201ENST00000364931 120 ntBASIC0.07□□□□□ -2.4
CCDC40Q4G0X9 Y_RNA.454-201ENST00000384224 113 ntBASIC0.07□□□□□ -2.4
CCDC40Q4G0X9 U8.15-201ENST00000390947 134 ntBASIC0.07□□□□□ -2.4
CCDC40Q4G0X9 AL606845.1-201ENST00000404881 255 ntBASIC0.07□□□□□ -2.4
CCDC40Q4G0X9 RNU6-453P-201ENST00000516819 85 ntBASIC0.07□□□□□ -2.4
CCDC40Q4G0X9 RNA5SP268-201ENST00000516828 124 ntBASIC0.07□□□□□ -2.4
CCDC40Q4G0X9 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC0.07□□□□□ -2.4
CCDC40Q4G0X9 AC134503.1-201ENST00000633048 54 ntBASIC0.07□□□□□ -2.4
CCDC40Q4G0X9 RNU6-403P-201ENST00000363163 104 ntBASIC0.06□□□□□ -2.4
CCDC40Q4G0X9 Y_RNA.199-201ENST00000364014 102 ntBASIC0.06□□□□□ -2.4
CCDC40Q4G0X9 Y_RNA.542-201ENST00000384641 111 ntBASIC0.06□□□□□ -2.4
CCDC40Q4G0X9 MIR616-201ENST00000385293 97 ntBASIC0.06□□□□□ -2.4
CCDC40Q4G0X9 RNU6-1203P-201ENST00000410703 110 ntBASIC0.06□□□□□ -2.4
CCDC40Q4G0X9 MIR4680-201ENST00000580906 66 ntBASIC0.06□□□□□ -2.4
CCDC40Q4G0X9 MIR3129-201ENST00000581095 76 ntBASIC0.06□□□□□ -2.4
CCDC40Q4G0X9 MIR5197-201ENST00000583721 112 ntBASIC0.06□□□□□ -2.4
CCDC40Q4G0X9 MIR8087-201ENST00000612745 78 ntBASIC0.06□□□□□ -2.4
CCDC40Q4G0X9 MIR6082-201ENST00000613604 109 ntBASIC0.06□□□□□ -2.4
CCDC40Q4G0X9 AC091932.4-201ENST00000623386 200 ntBASIC0.06□□□□□ -2.4
CCDC40Q4G0X9 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC0.05□□□□□ -2.4
CCDC40Q4G0X9 MIR330-201ENST00000362196 94 ntBASIC0.05□□□□□ -2.4
CCDC40Q4G0X9 Y_RNA.174-201ENST00000363781 105 ntBASIC0.05□□□□□ -2.4
CCDC40Q4G0X9 RNU6-716P-201ENST00000365621 103 ntBASIC0.05□□□□□ -2.4
CCDC40Q4G0X9 Y_RNA.460-201ENST00000384255 102 ntBASIC0.05□□□□□ -2.4
CCDC40Q4G0X9 Y_RNA.588-201ENST00000391254 102 ntBASIC0.05□□□□□ -2.4
CCDC40Q4G0X9 Y_RNA.618-201ENST00000410949 107 ntBASIC0.05□□□□□ -2.4
CCDC40Q4G0X9 AC113618.1-201ENST00000416747 285 ntBASIC0.05□□□□□ -2.4
CCDC40Q4G0X9 MTATP6P23-201ENST00000440153 476 ntBASIC0.05□□□□□ -2.4
CCDC40Q4G0X9 RNU6-135P-201ENST00000516769 101 ntBASIC0.05□□□□□ -2.4
CCDC40Q4G0X9 RNU6-765P-201ENST00000516916 99 ntBASIC0.05□□□□□ -2.4
CCDC40Q4G0X9 MIR6779-201ENST00000617283 64 ntBASIC0.05□□□□□ -2.4
CCDC40Q4G0X9 Y_RNA.32-201ENST00000362589 110 ntBASIC0.04□□□□□ -2.4
CCDC40Q4G0X9 Y_RNA.44-201ENST00000362676 108 ntBASIC0.04□□□□□ -2.4
CCDC40Q4G0X9 Y_RNA.138-201ENST00000363462 102 ntBASIC0.04□□□□□ -2.4
CCDC40Q4G0X9 Y_RNA.153-201ENST00000363615 91 ntBASIC0.04□□□□□ -2.4
CCDC40Q4G0X9 Y_RNA.258-201ENST00000364613 105 ntBASIC0.04□□□□□ -2.4
CCDC40Q4G0X9 RNU6-1292P-201ENST00000383856 107 ntBASIC0.04□□□□□ -2.4
CCDC40Q4G0X9 MIR1197-201ENST00000408818 88 ntBASIC0.04□□□□□ -2.4
CCDC40Q4G0X9 AC141846.1-201ENST00000568348 142 ntBASIC0.04□□□□□ -2.4
CCDC40Q4G0X9 AL596211.1-201ENST00000569873 2277 ntBASIC0.04□□□□□ -2.4
CCDC40Q4G0X9 SNORA42.1-201ENST00000363515 137 ntBASIC0.03□□□□□ -2.4
CCDC40Q4G0X9 MIR548P-201ENST00000408336 84 ntBASIC0.03□□□□□ -2.4
CCDC40Q4G0X9 RNU6-651P-201ENST00000411040 105 ntBASIC0.03□□□□□ -2.4
CCDC40Q4G0X9 SNORD2.1-201ENST00000458762 69 ntBASIC0.03□□□□□ -2.4
CCDC40Q4G0X9 RNU6-848P-201ENST00000515948 107 ntBASIC0.03□□□□□ -2.4
CCDC40Q4G0X9 RNU6-617P-201ENST00000516147 107 ntBASIC0.03□□□□□ -2.4
CCDC40Q4G0X9 RNU6-473P-201ENST00000516164 107 ntBASIC0.03□□□□□ -2.4
CCDC40Q4G0X9 RNU6-1049P-201ENST00000516414 107 ntBASIC0.03□□□□□ -2.4
CCDC40Q4G0X9 SNORA31.14-201ENST00000516728 116 ntBASIC0.03□□□□□ -2.4
CCDC40Q4G0X9 RNU6-570P-201ENST00000517051 105 ntBASIC0.03□□□□□ -2.4
Retrieved 100 of 98,524 protein–RNA pairs in 198.7 ms