Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 MIR4648-201ENST00000580107 72 ntBASIC2.42□□□□□ -2.02
SOX4Q06945 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC2.42□□□□□ -2.02
SOX4Q06945 MIR424-201ENST00000362227 98 ntBASIC2.41□□□□□ -2.02
SOX4Q06945 Y_RNA.247-201ENST00000364500 92 ntBASIC2.41□□□□□ -2.02
SOX4Q06945 DEFA7P-201ENST00000382676 285 ntBASIC2.41□□□□□ -2.02
SOX4Q06945 RNU6-813P-201ENST00000384691 107 ntBASIC2.41□□□□□ -2.02
SOX4Q06945 AC090844.1-201ENST00000422019 156 ntBASIC2.41□□□□□ -2.02
SOX4Q06945 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC2.41□□□□□ -2.02
SOX4Q06945 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC2.4□□□□□ -2.02
SOX4Q06945 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.02
SOX4Q06945 SNORD116-10-201ENST00000363791 102 ntBASIC2.4□□□□□ -2.03
SOX4Q06945 RNU6-219P-201ENST00000364728 107 ntBASIC2.4□□□□□ -2.03
SOX4Q06945 SNORD58A-201ENST00000383875 65 ntBASIC2.4□□□□□ -2.03
SOX4Q06945 MIR206-201ENST00000384872 86 ntBASIC2.4□□□□□ -2.03
SOX4Q06945 U8.15-201ENST00000390947 134 ntBASIC2.4□□□□□ -2.03
SOX4Q06945 AL023284.1-201ENST00000403956 276 ntBASIC2.4□□□□□ -2.03
SOX4Q06945 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC2.4□□□□□ -2.03
SOX4Q06945 RNA5SP395-201ENST00000516567 118 ntBASIC2.4□□□□□ -2.03
SOX4Q06945 RNU7-35P-201ENST00000517174 62 ntBASIC2.4□□□□□ -2.03
SOX4Q06945 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC2.4□□□□□ -2.03
SOX4Q06945 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC2.4□□□□□ -2.03
SOX4Q06945 RNU6-979P-201ENST00000383896 107 ntBASIC2.39□□□□□ -2.03
SOX4Q06945 RNU1-52P-201ENST00000384190 164 ntBASIC2.39□□□□□ -2.03
SOX4Q06945 SNORA64-201ENST00000384674 134 ntBASIC2.39□□□□□ -2.03
SOX4Q06945 RNU6-1006P-201ENST00000516998 103 ntBASIC2.39□□□□□ -2.03
SOX4Q06945 MIR5588-201ENST00000581890 63 ntBASIC2.39□□□□□ -2.03
SOX4Q06945 RNU6-86P-201ENST00000606534 107 ntBASIC2.39□□□□□ -2.03
SOX4Q06945 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
SOX4Q06945 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.38□□□□□ -2.03
SOX4Q06945 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.38□□□□□ -2.03
SOX4Q06945 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC2.38□□□□□ -2.03
SOX4Q06945 Y_RNA.140-201ENST00000363474 103 ntBASIC2.38□□□□□ -2.03
SOX4Q06945 Y_RNA.354-201ENST00000365448 111 ntBASIC2.38□□□□□ -2.03
SOX4Q06945 RNU6-1307P-201ENST00000391012 103 ntBASIC2.38□□□□□ -2.03
SOX4Q06945 MIR4668-201ENST00000582284 70 ntBASIC2.38□□□□□ -2.03
SOX4Q06945 MIR8065-201ENST00000620577 100 ntBASIC2.38□□□□□ -2.03
SOX4Q06945 AC025521.1-201ENST00000621624 286 ntBASIC2.38□□□□□ -2.03
SOX4Q06945 MIR6873-201ENST00000622788 63 ntBASIC2.38□□□□□ -2.03
SOX4Q06945 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC2.38□□□□□ -2.03
SOX4Q06945 Z97988.1-201ENST00000637697 135 ntBASIC2.38□□□□□ -2.03
SOX4Q06945 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC2.38□□□□□ -2.03
SOX4Q06945 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC2.37□□□□□ -2.03
SOX4Q06945 MIR6073-201ENST00000352083 89 ntBASIC2.37□□□□□ -2.03
SOX4Q06945 SNORD38.1-201ENST00000363863 68 ntBASIC2.37□□□□□ -2.03
SOX4Q06945 RNU6-1163P-201ENST00000364516 107 ntBASIC2.37□□□□□ -2.03
SOX4Q06945 RNU6-787P-201ENST00000384032 107 ntBASIC2.37□□□□□ -2.03
SOX4Q06945 SNORA67.3-201ENST00000384366 140 ntBASIC2.37□□□□□ -2.03
SOX4Q06945 Y_RNA.620-201ENST00000411009 88 ntBASIC2.37□□□□□ -2.03
SOX4Q06945 AC011753.1-201ENST00000451001 220 ntBASIC2.37□□□□□ -2.03
SOX4Q06945 RNU6ATAC9P-201ENST00000516210 116 ntBASIC2.37□□□□□ -2.03
SOX4Q06945 RNU7-43P-201ENST00000516554 64 ntBASIC2.37□□□□□ -2.03
SOX4Q06945 AC103810.7-201ENST00000607821 91 ntBASIC2.37□□□□□ -2.03
SOX4Q06945 U1.36-201ENST00000620684 176 ntBASIC2.37□□□□□ -2.03
SOX4Q06945 RNY1P4-201ENST00000384595 115 ntBASIC2.36□□□□□ -2.03
SOX4Q06945 MIR34C-201ENST00000384831 77 ntBASIC2.36□□□□□ -2.03
SOX4Q06945 RNA5SP100-201ENST00000410903 110 ntBASIC2.36□□□□□ -2.03
SOX4Q06945 RNA5SP59-201ENST00000410922 110 ntBASIC2.36□□□□□ -2.03
SOX4Q06945 RNU6-1086P-201ENST00000410930 100 ntBASIC2.36□□□□□ -2.03
SOX4Q06945 AL445685.2-201ENST00000422551 342 ntBASIC2.36□□□□□ -2.03
SOX4Q06945 RNU7-79P-201ENST00000516082 62 ntBASIC2.36□□□□□ -2.03
SOX4Q06945 5S_rRNA.3-201ENST00000517021 110 ntBASIC2.36□□□□□ -2.03
SOX4Q06945 MIR4764-201ENST00000580680 88 ntBASIC2.36□□□□□ -2.03
SOX4Q06945 5S_rRNA.19-201ENST00000612131 110 ntBASIC2.36□□□□□ -2.03
SOX4Q06945 5S_rRNA.18-201ENST00000621941 110 ntBASIC2.36□□□□□ -2.03
SOX4Q06945 AC008133.2-201ENST00000624540 351 ntBASIC2.36□□□□□ -2.03
SOX4Q06945 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC2.36□□□□□ -2.03
SOX4Q06945 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC2.35□□□□□ -2.03
SOX4Q06945 RNU6ATAC41P-201ENST00000408600 126 ntBASIC2.35□□□□□ -2.03
SOX4Q06945 RNU6-602P-201ENST00000411155 105 ntBASIC2.35□□□□□ -2.03
SOX4Q06945 RNA5SP270-201ENST00000411361 118 ntBASIC2.35□□□□□ -2.03
SOX4Q06945 RPS29P28-201ENST00000446439 141 ntBASIC2.35□□□□□ -2.03
SOX4Q06945 snoU13.15-201ENST00000459407 104 ntBASIC2.35□□□□□ -2.03
SOX4Q06945 RNU7-171P-201ENST00000459581 62 ntBASIC2.35□□□□□ -2.03
SOX4Q06945 SNORD67.1-201ENST00000516618 108 ntBASIC2.35□□□□□ -2.03
SOX4Q06945 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC2.35□□□□□ -2.03
SOX4Q06945 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC2.35□□□□□ -2.03
SOX4Q06945 MIR520C-201ENST00000385005 87 ntBASIC2.34□□□□□ -2.03
SOX4Q06945 RNU6-917P-201ENST00000516294 104 ntBASIC2.34□□□□□ -2.03
SOX4Q06945 SNORA31.11-201ENST00000516528 139 ntBASIC2.34□□□□□ -2.03
SOX4Q06945 RNA5SP82-201ENST00000516707 92 ntBASIC2.34□□□□□ -2.03
SOX4Q06945 AC080100.1-201ENST00000624239 5356 ntBASIC2.34□□□□□ -2.04
SOX4Q06945 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC2.33□□□□□ -2.04
SOX4Q06945 Y_RNA.448-201ENST00000384185 108 ntBASIC2.33□□□□□ -2.04
SOX4Q06945 RNU6-360P-201ENST00000390944 104 ntBASIC2.33□□□□□ -2.04
SOX4Q06945 RNA5SP181-201ENST00000410246 98 ntBASIC2.33□□□□□ -2.04
SOX4Q06945 snoU13.26-201ENST00000459452 105 ntBASIC2.33□□□□□ -2.04
SOX4Q06945 RNA5SP200-201ENST00000516360 103 ntBASIC2.33□□□□□ -2.04
SOX4Q06945 RNA5SP402-201ENST00000517148 110 ntBASIC2.33□□□□□ -2.04
SOX4Q06945 HMSD-204ENST00000526932 162 ntTSL 3 BASIC2.33□□□□□ -2.04
SOX4Q06945 CYP3A52P-201ENST00000563326 91 ntBASIC2.33□□□□□ -2.04
SOX4Q06945 MIR4666B-201ENST00000578142 81 ntBASIC2.33□□□□□ -2.04
SOX4Q06945 MIR3124-201ENST00000582636 67 ntBASIC2.33□□□□□ -2.04
SOX4Q06945 AC245884.12-201ENST00000615364 59 ntBASIC2.33□□□□□ -2.04
SOX4Q06945 MIR6715A-201ENST00000615929 79 ntBASIC2.33□□□□□ -2.04
SOX4Q06945 SEPT14P17-201ENST00000617978 177 ntBASIC2.33□□□□□ -2.04
SOX4Q06945 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC2.33□□□□□ -2.04
SOX4Q06945 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC2.32□□□□□ -2.04
SOX4Q06945 RNU6-865P-201ENST00000364772 107 ntBASIC2.32□□□□□ -2.04
SOX4Q06945 Y_RNA.313-201ENST00000365095 103 ntBASIC2.32□□□□□ -2.04
SOX4Q06945 Y_RNA.426-201ENST00000384068 113 ntBASIC2.32□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 169.1 ms