Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 HSBP1P2-201ENST00000299671 229 ntBASIC0.85□□□□□ -2.27
HDAC3O15379 SNORA1.2-201ENST00000365189 134 ntBASIC0.85□□□□□ -2.27
HDAC3O15379 SNORA25-201ENST00000384384 134 ntBASIC0.85□□□□□ -2.27
HDAC3O15379 SNORA51.10-201ENST00000384418 136 ntBASIC0.85□□□□□ -2.27
HDAC3O15379 Y_RNA.537-201ENST00000384626 109 ntBASIC0.85□□□□□ -2.27
HDAC3O15379 SNORA20-201ENST00000384662 132 ntBASIC0.85□□□□□ -2.27
HDAC3O15379 MIR569-201ENST00000385228 96 ntBASIC0.85□□□□□ -2.27
HDAC3O15379 RNU6-910P-201ENST00000390844 107 ntBASIC0.85□□□□□ -2.27
HDAC3O15379 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC0.85□□□□□ -2.27
HDAC3O15379 HMGN1P33-201ENST00000432945 451 ntBASIC0.85□□□□□ -2.27
HDAC3O15379 RPL39P39-201ENST00000455840 151 ntBASIC0.85□□□□□ -2.27
HDAC3O15379 RPS29P24-201ENST00000486345 171 ntBASIC0.85□□□□□ -2.27
HDAC3O15379 RNU6-998P-201ENST00000515894 101 ntBASIC0.85□□□□□ -2.27
HDAC3O15379 RNA5SP236-201ENST00000516169 116 ntBASIC0.85□□□□□ -2.27
HDAC3O15379 SNORA25.12-201ENST00000516202 82 ntBASIC0.85□□□□□ -2.27
HDAC3O15379 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC0.85□□□□□ -2.27
HDAC3O15379 AC112693.2-201ENST00000556538 232 ntBASIC0.85□□□□□ -2.27
HDAC3O15379 MIR3646-201ENST00000578301 84 ntBASIC0.85□□□□□ -2.27
HDAC3O15379 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC0.85□□□□□ -2.27
HDAC3O15379 MIR96-201ENST00000362288 78 ntBASIC0.84□□□□□ -2.27
HDAC3O15379 SNORD114-2-201ENST00000363953 78 ntBASIC0.84□□□□□ -2.27
HDAC3O15379 RNA5SP48-201ENST00000363969 126 ntBASIC0.84□□□□□ -2.27
HDAC3O15379 Y_RNA.215-201ENST00000364204 112 ntBASIC0.84□□□□□ -2.27
HDAC3O15379 Y_RNA.351-201ENST00000365436 96 ntBASIC0.84□□□□□ -2.27
HDAC3O15379 RNU6-1062P-201ENST00000383908 107 ntBASIC0.84□□□□□ -2.27
HDAC3O15379 Y_RNA.400-201ENST00000383963 111 ntBASIC0.84□□□□□ -2.27
HDAC3O15379 RNU6-125P-201ENST00000384505 107 ntBASIC0.84□□□□□ -2.27
HDAC3O15379 RNU7-67P-201ENST00000459003 62 ntBASIC0.84□□□□□ -2.27
HDAC3O15379 RNU2-11P-201ENST00000459191 187 ntBASIC0.84□□□□□ -2.27
HDAC3O15379 PRELID3BP2-201ENST00000605362 201 ntBASIC0.84□□□□□ -2.27
HDAC3O15379 AC091932.4-201ENST00000623386 200 ntBASIC0.84□□□□□ -2.27
HDAC3O15379 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.83□□□□□ -2.28
HDAC3O15379 MIR103A2-201ENST00000362154 78 ntBASIC0.83□□□□□ -2.28
HDAC3O15379 RNA5SP264-201ENST00000363115 107 ntBASIC0.83□□□□□ -2.28
HDAC3O15379 RNU6-187P-201ENST00000384139 106 ntBASIC0.83□□□□□ -2.28
HDAC3O15379 MIR532-201ENST00000385025 91 ntBASIC0.83□□□□□ -2.28
HDAC3O15379 MIR1276-201ENST00000408707 83 ntBASIC0.83□□□□□ -2.28
HDAC3O15379 AL035398.1-201ENST00000430869 322 ntBASIC0.83□□□□□ -2.28
HDAC3O15379 RNU6-351P-201ENST00000516097 100 ntBASIC0.83□□□□□ -2.28
HDAC3O15379 RNU6-426P-201ENST00000516464 97 ntBASIC0.83□□□□□ -2.28
HDAC3O15379 MIR3133-201ENST00000583157 78 ntBASIC0.83□□□□□ -2.28
HDAC3O15379 AC131055.1-201ENST00000584626 316 ntBASIC0.83□□□□□ -2.28
HDAC3O15379 FAM71BP1-201ENST00000604431 523 ntBASIC0.83□□□□□ -2.28
HDAC3O15379 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.83□□□□□ -2.28
HDAC3O15379 AL596211.1-201ENST00000569873 2277 ntBASIC0.82□□□□□ -2.28
HDAC3O15379 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC0.82□□□□□ -2.28
HDAC3O15379 RNU6-654P-201ENST00000364373 107 ntBASIC0.82□□□□□ -2.28
HDAC3O15379 AL392103.1-201ENST00000447000 198 ntBASIC0.82□□□□□ -2.28
HDAC3O15379 Y_RNA.651-201ENST00000459380 103 ntBASIC0.82□□□□□ -2.28
HDAC3O15379 RNU7-96P-201ENST00000459535 64 ntBASIC0.82□□□□□ -2.28
HDAC3O15379 SNORD79.1-201ENST00000516069 84 ntBASIC0.82□□□□□ -2.28
HDAC3O15379 AL020996.3-201ENST00000606617 222 ntBASIC0.82□□□□□ -2.28
HDAC3O15379 MIR8055-201ENST00000610739 97 ntBASIC0.82□□□□□ -2.28
HDAC3O15379 MIR6516-201ENST00000630554 81 ntBASIC0.82□□□□□ -2.28
HDAC3O15379 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC0.82□□□□□ -2.28
HDAC3O15379 RNU6-309P-201ENST00000364573 106 ntBASIC0.81□□□□□ -2.28
HDAC3O15379 RNU4-16P-201ENST00000364737 141 ntBASIC0.81□□□□□ -2.28
HDAC3O15379 Y_RNA.294-201ENST00000364916 102 ntBASIC0.81□□□□□ -2.28
HDAC3O15379 SNORA25.9-201ENST00000365087 128 ntBASIC0.81□□□□□ -2.28
HDAC3O15379 Y_RNA.584-201ENST00000391090 114 ntBASIC0.81□□□□□ -2.28
HDAC3O15379 SNORA26.6-201ENST00000391256 115 ntBASIC0.81□□□□□ -2.28
HDAC3O15379 RNA5SP95-201ENST00000410319 137 ntBASIC0.81□□□□□ -2.28
HDAC3O15379 SUMO1P3-201ENST00000439961 304 ntBASIC0.81□□□□□ -2.28
HDAC3O15379 RNU7-73P-201ENST00000458743 63 ntBASIC0.81□□□□□ -2.28
HDAC3O15379 AC107297.1-201ENST00000459991 176 ntBASIC0.81□□□□□ -2.28
HDAC3O15379 MIR548X2-201ENST00000579776 100 ntBASIC0.81□□□□□ -2.28
HDAC3O15379 AC013244.2-201ENST00000603396 103 ntBASIC0.81□□□□□ -2.28
HDAC3O15379 MIR6767-201ENST00000637302 66 ntBASIC0.81□□□□□ -2.28
HDAC3O15379 RNY1P5-201ENST00000383890 115 ntBASIC0.8□□□□□ -2.28
HDAC3O15379 Y_RNA.420-201ENST00000384043 110 ntBASIC0.8□□□□□ -2.28
HDAC3O15379 snoU13.16-201ENST00000459350 104 ntBASIC0.8□□□□□ -2.28
HDAC3O15379 RNU7-21P-201ENST00000459430 62 ntBASIC0.8□□□□□ -2.28
HDAC3O15379 SNORA70.22-201ENST00000517160 124 ntBASIC0.8□□□□□ -2.28
HDAC3O15379 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC0.8□□□□□ -2.28
HDAC3O15379 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC0.79□□□□□ -2.28
HDAC3O15379 RNU6-349P-201ENST00000362402 107 ntBASIC0.79□□□□□ -2.28
HDAC3O15379 RNU1-133P-201ENST00000364867 167 ntBASIC0.79□□□□□ -2.28
HDAC3O15379 RNU6-915P-201ENST00000364943 103 ntBASIC0.79□□□□□ -2.28
HDAC3O15379 Y_RNA.488-201ENST00000384403 102 ntBASIC0.79□□□□□ -2.28
HDAC3O15379 RNU6-1067P-201ENST00000384752 107 ntBASIC0.79□□□□□ -2.28
HDAC3O15379 MIR222-201ENST00000384992 110 ntBASIC0.79□□□□□ -2.28
HDAC3O15379 MIR513C-201ENST00000401352 84 ntBASIC0.79□□□□□ -2.28
HDAC3O15379 AC244023.1-201ENST00000426884 112 ntBASIC0.79□□□□□ -2.28
HDAC3O15379 RNU7-53P-201ENST00000516705 60 ntBASIC0.79□□□□□ -2.28
HDAC3O15379 AC242498.1-201ENST00000604134 111 ntBASIC0.79□□□□□ -2.28
HDAC3O15379 AC108081.1-201ENST00000604358 221 ntBASIC0.79□□□□□ -2.28
HDAC3O15379 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC0.79□□□□□ -2.28
HDAC3O15379 AC008163.1-202ENST00000636004 2889 ntBASIC0.78□□□□□ -2.28
HDAC3O15379 Y_RNA.120-201ENST00000363304 110 ntBASIC0.78□□□□□ -2.28
HDAC3O15379 Y_RNA.330-201ENST00000365230 109 ntBASIC0.78□□□□□ -2.28
HDAC3O15379 SNORD114-22-201ENST00000365423 72 ntBASIC0.78□□□□□ -2.28
HDAC3O15379 SNORA80D-201ENST00000384488 135 ntBASIC0.78□□□□□ -2.28
HDAC3O15379 Y_RNA.568-201ENST00000384742 113 ntBASIC0.78□□□□□ -2.28
HDAC3O15379 MIR499A-201ENST00000384903 122 ntBASIC0.78□□□□□ -2.28
HDAC3O15379 RNU6-257P-201ENST00000410238 98 ntBASIC0.78□□□□□ -2.28
HDAC3O15379 RNU6-602P-201ENST00000411155 105 ntBASIC0.78□□□□□ -2.28
HDAC3O15379 AC063976.4-201ENST00000421971 163 ntBASIC0.78□□□□□ -2.28
HDAC3O15379 AC002429.1-201ENST00000437672 148 ntBASIC0.78□□□□□ -2.28
HDAC3O15379 RNU7-80P-201ENST00000459562 61 ntBASIC0.78□□□□□ -2.28
HDAC3O15379 Y_RNA.690-201ENST00000516603 95 ntBASIC0.78□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 311 ms