Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 AC007494.3-201ENST00000624660 743 ntBASIC-2.69□□□□□ -2.84
CCDC88BA6NC98 Y_RNA.10-201ENST00000362371 110 ntBASIC-2.7□□□□□ -2.84
CCDC88BA6NC98 Y_RNA.302-201ENST00000364997 102 ntBASIC-2.7□□□□□ -2.84
CCDC88BA6NC98 SNORD116.1-201ENST00000365628 92 ntBASIC-2.7□□□□□ -2.84
CCDC88BA6NC98 MIR582-201ENST00000365731 98 ntBASIC-2.7□□□□□ -2.84
CCDC88BA6NC98 SNORD63B-201ENST00000411005 70 ntBASIC-2.7□□□□□ -2.84
CCDC88BA6NC98 EIF1P2-201ENST00000428233 350 ntBASIC-2.7□□□□□ -2.84
CCDC88BA6NC98 SNORA40.9-201ENST00000515895 93 ntBASIC-2.7□□□□□ -2.84
CCDC88BA6NC98 RNU6-720P-201ENST00000516363 108 ntBASIC-2.7□□□□□ -2.84
CCDC88BA6NC98 ST7-OT4_4.1-201ENST00000614993 213 ntBASIC-2.7□□□□□ -2.84
CCDC88BA6NC98 SNORA22.1-201ENST00000362701 134 ntBASIC-2.71□□□□□ -2.84
CCDC88BA6NC98 Y_RNA.106-201ENST00000363189 100 ntBASIC-2.71□□□□□ -2.84
CCDC88BA6NC98 RNU6-879P-201ENST00000364328 108 ntBASIC-2.71□□□□□ -2.84
CCDC88BA6NC98 SNORD115-23-201ENST00000364461 82 ntBASIC-2.71□□□□□ -2.84
CCDC88BA6NC98 RNY3P9-201ENST00000384727 106 ntBASIC-2.71□□□□□ -2.84
CCDC88BA6NC98 MTND3P1-201ENST00000441336 220 ntBASIC-2.71□□□□□ -2.84
CCDC88BA6NC98 RNU6-436P-201ENST00000516171 114 ntBASIC-2.71□□□□□ -2.84
CCDC88BA6NC98 RNU7-149P-201ENST00000516739 59 ntBASIC-2.71□□□□□ -2.84
CCDC88BA6NC98 AL049861.1-201ENST00000603130 150 ntBASIC-2.71□□□□□ -2.84
CCDC88BA6NC98 RNU6-903P-201ENST00000391270 109 ntBASIC-2.71□□□□□ -2.84
CCDC88BA6NC98 MIR548E-201ENST00000408287 88 ntBASIC-2.71□□□□□ -2.84
CCDC88BA6NC98 RNU7-115P-201ENST00000516433 55 ntBASIC-2.71□□□□□ -2.84
CCDC88BA6NC98 RNY4-201ENST00000516507 96 ntBASIC-2.71□□□□□ -2.84
CCDC88BA6NC98 SOX2OT_exon1.1-201ENST00000614902 232 ntBASIC-2.71□□□□□ -2.84
CCDC88BA6NC98 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC-2.71□□□□□ -2.84
CCDC88BA6NC98 Y_RNA.103-201ENST00000363171 102 ntBASIC-2.72□□□□□ -2.85
CCDC88BA6NC98 RNU6-400P-201ENST00000391173 106 ntBASIC-2.72□□□□□ -2.85
CCDC88BA6NC98 FGF7P6-202ENST00000451282 293 ntBASIC-2.72□□□□□ -2.85
CCDC88BA6NC98 AC022140.2-201ENST00000623500 188 ntBASIC-2.72□□□□□ -2.85
CCDC88BA6NC98 Y_RNA.27-201ENST00000362540 103 ntBASIC-2.73□□□□□ -2.85
CCDC88BA6NC98 RNU4-80P-201ENST00000363200 141 ntBASIC-2.73□□□□□ -2.85
CCDC88BA6NC98 RNY3P4-201ENST00000384428 101 ntBASIC-2.73□□□□□ -2.85
CCDC88BA6NC98 MIRLET7B-201ENST00000385140 83 ntBASIC-2.73□□□□□ -2.85
CCDC88BA6NC98 AC127455.1-201ENST00000565496 145 ntBASIC-2.73□□□□□ -2.85
CCDC88BA6NC98 MIR3139-201ENST00000579145 76 ntBASIC-2.73□□□□□ -2.85
CCDC88BA6NC98 AL080274.1-201ENST00000605565 220 ntBASIC-2.73□□□□□ -2.85
CCDC88BA6NC98 AC098479.1-201ENST00000609225 154 ntBASIC-2.73□□□□□ -2.85
CCDC88BA6NC98 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC-2.73□□□□□ -2.85
CCDC88BA6NC98 RNY4P28-201ENST00000365281 93 ntBASIC-2.74□□□□□ -2.85
CCDC88BA6NC98 Y_RNA.440-201ENST00000384120 114 ntBASIC-2.74□□□□□ -2.85
CCDC88BA6NC98 Y_RNA.587-201ENST00000391210 103 ntBASIC-2.74□□□□□ -2.85
CCDC88BA6NC98 RNU6-337P-201ENST00000391243 106 ntBASIC-2.74□□□□□ -2.85
CCDC88BA6NC98 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC-2.74□□□□□ -2.85
CCDC88BA6NC98 RNU6-408P-201ENST00000515910 100 ntBASIC-2.74□□□□□ -2.85
CCDC88BA6NC98 RNU6-470P-201ENST00000515954 104 ntBASIC-2.74□□□□□ -2.85
CCDC88BA6NC98 RNU6-762P-201ENST00000517107 102 ntBASIC-2.74□□□□□ -2.85
CCDC88BA6NC98 Y_RNA.5-201ENST00000362334 102 ntBASIC-2.75□□□□□ -2.85
CCDC88BA6NC98 RNU5F-6P-201ENST00000362979 116 ntBASIC-2.75□□□□□ -2.85
CCDC88BA6NC98 Y_RNA.175-201ENST00000363794 111 ntBASIC-2.75□□□□□ -2.85
CCDC88BA6NC98 MIR548I2-201ENST00000408348 149 ntBASIC-2.75□□□□□ -2.85
CCDC88BA6NC98 AF228730.4-201ENST00000421457 183 ntBASIC-2.75□□□□□ -2.85
CCDC88BA6NC98 PCMTD1P1-201ENST00000455560 355 ntBASIC-2.75□□□□□ -2.85
CCDC88BA6NC98 AC010387.1-201ENST00000507526 487 ntTSL 2 BASIC-2.75□□□□□ -2.85
CCDC88BA6NC98 Y_RNA.706-201ENST00000516933 99 ntBASIC-2.75□□□□□ -2.85
CCDC88BA6NC98 MTND4P7-201ENST00000523876 130 ntBASIC-2.75□□□□□ -2.85
CCDC88BA6NC98 AC024909.2-201ENST00000553035 286 ntBASIC-2.75□□□□□ -2.85
CCDC88BA6NC98 DLEU2_5.2-201ENST00000610606 84 ntBASIC-2.75□□□□□ -2.85
CCDC88BA6NC98 HULC.1-201ENST00000612720 240 ntBASIC-2.75□□□□□ -2.85
CCDC88BA6NC98 RNU6-194P-201ENST00000363862 105 ntBASIC-2.76□□□□□ -2.85
CCDC88BA6NC98 Y_RNA.432-201ENST00000384087 111 ntBASIC-2.76□□□□□ -2.85
CCDC88BA6NC98 ZRANB2-AS2-201ENST00000411721 518 ntTSL 3 BASIC-2.76□□□□□ -2.85
CCDC88BA6NC98 RNU7-106P-201ENST00000459514 67 ntBASIC-2.76□□□□□ -2.85
CCDC88BA6NC98 RNU6-1170P-201ENST00000515974 106 ntBASIC-2.76□□□□□ -2.85
CCDC88BA6NC98 RNU6-168P-201ENST00000516189 101 ntBASIC-2.76□□□□□ -2.85
CCDC88BA6NC98 RNU7-35P-201ENST00000517174 62 ntBASIC-2.76□□□□□ -2.85
CCDC88BA6NC98 RNU6-924P-201ENST00000362926 108 ntBASIC-2.77□□□□□ -2.85
CCDC88BA6NC98 Y_RNA.101-201ENST00000363154 102 ntBASIC-2.77□□□□□ -2.85
CCDC88BA6NC98 Y_RNA.212-201ENST00000364177 102 ntBASIC-2.77□□□□□ -2.85
CCDC88BA6NC98 Y_RNA.310-201ENST00000365063 113 ntBASIC-2.77□□□□□ -2.85
CCDC88BA6NC98 RNU6-1189P-201ENST00000383958 107 ntBASIC-2.77□□□□□ -2.85
CCDC88BA6NC98 BX295541.1-201ENST00000417774 250 ntBASIC-2.77□□□□□ -2.85
CCDC88BA6NC98 AF228730.3-201ENST00000436691 102 ntBASIC-2.77□□□□□ -2.85
CCDC88BA6NC98 RNU2-31P-201ENST00000516954 155 ntBASIC-2.77□□□□□ -2.85
CCDC88BA6NC98 MIR5696-201ENST00000578474 85 ntBASIC-2.77□□□□□ -2.85
CCDC88BA6NC98 MIR5692C1-201ENST00000585309 91 ntBASIC-2.77□□□□□ -2.85
CCDC88BA6NC98 AC018638.8-201ENST00000588755 281 ntBASIC-2.77□□□□□ -2.85
CCDC88BA6NC98 RNA5SP405-201ENST00000363059 114 ntBASIC-2.77□□□□□ -2.85
CCDC88BA6NC98 RNU6-108P-201ENST00000365558 107 ntBASIC-2.77□□□□□ -2.85
CCDC88BA6NC98 SNORD61-201ENST00000384252 73 ntBASIC-2.77□□□□□ -2.85
CCDC88BA6NC98 MIR519A1-201ENST00000385257 85 ntBASIC-2.77□□□□□ -2.85
CCDC88BA6NC98 RNU6ATAC41P-201ENST00000408600 126 ntBASIC-2.77□□□□□ -2.85
CCDC88BA6NC98 SNORD75.2-201ENST00000408784 58 ntBASIC-2.77□□□□□ -2.85
CCDC88BA6NC98 AL365203.2-201ENST00000423444 196 ntBASIC-2.77□□□□□ -2.85
CCDC88BA6NC98 AL158210.1-201ENST00000448835 500 ntTSL 3 BASIC-2.77□□□□□ -2.85
CCDC88BA6NC98 RNU7-187P-201ENST00000458985 68 ntBASIC-2.77□□□□□ -2.85
CCDC88BA6NC98 AL512427.1-201ENST00000618593 349 ntBASIC-2.77□□□□□ -2.85
CCDC88BA6NC98 Y_RNA.486-201ENST00000384398 107 ntBASIC-2.78□□□□□ -2.86
CCDC88BA6NC98 MIR548H3-201ENST00000408771 118 ntBASIC-2.78□□□□□ -2.86
CCDC88BA6NC98 RNU6-710P-201ENST00000410424 105 ntBASIC-2.78□□□□□ -2.86
CCDC88BA6NC98 SNORA36B-201ENST00000410438 131 ntBASIC-2.78□□□□□ -2.86
CCDC88BA6NC98 Y_RNA.239-201ENST00000364444 113 ntBASIC-2.79□□□□□ -2.86
CCDC88BA6NC98 RNU6-660P-201ENST00000364566 109 ntBASIC-2.79□□□□□ -2.86
CCDC88BA6NC98 RNU6-318P-201ENST00000384283 103 ntBASIC-2.79□□□□□ -2.86
CCDC88BA6NC98 SNORA53-201ENST00000391141 249 ntBASIC-2.79□□□□□ -2.86
CCDC88BA6NC98 RNU6-189P-201ENST00000516120 101 ntBASIC-2.79□□□□□ -2.86
CCDC88BA6NC98 SNORD67.1-201ENST00000516618 108 ntBASIC-2.79□□□□□ -2.86
CCDC88BA6NC98 RNU6-1258P-201ENST00000516911 111 ntBASIC-2.79□□□□□ -2.86
CCDC88BA6NC98 RNU6-1270P-201ENST00000517128 108 ntBASIC-2.79□□□□□ -2.86
CCDC88BA6NC98 VTRNA2-1-201ENST00000602301 127 ntBASIC-2.79□□□□□ -2.86
CCDC88BA6NC98 MIR6841-201ENST00000637129 72 ntBASIC-2.79□□□□□ -2.86
Retrieved 100 of 98,524 protein–RNA pairs in 229.8 ms