Protein–RNA interactions for Protein: Q9Y6R9

CCDC61, Coiled-coil domain-containing protein 61, humanhuman

Predictions only

Length 512 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC61Q9Y6R9 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC4.01□□□□□ -1.77
CCDC61Q9Y6R9 SNORA9.2-201ENST00000365361 133 ntBASIC4.01□□□□□ -1.77
CCDC61Q9Y6R9 SNORD38B-201ENST00000384690 67 ntBASIC4.01□□□□□ -1.77
CCDC61Q9Y6R9 MIR526A1-201ENST00000384897 85 ntBASIC4.01□□□□□ -1.77
CCDC61Q9Y6R9 AC003685.2-201ENST00000422795 395 ntBASIC4.01□□□□□ -1.77
CCDC61Q9Y6R9 SNORD38B-202ENST00000625943 69 ntBASIC4.01□□□□□ -1.77
CCDC61Q9Y6R9 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC4.01□□□□□ -1.77
CCDC61Q9Y6R9 MIR184-201ENST00000384962 84 ntBASIC4□□□□□ -1.77
CCDC61Q9Y6R9 AC022513.1-201ENST00000624512 117 ntBASIC4□□□□□ -1.77
CCDC61Q9Y6R9 U6.98-201ENST00000637157 84 ntBASIC4□□□□□ -1.77
CCDC61Q9Y6R9 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC4□□□□□ -1.77
CCDC61Q9Y6R9 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC3.99□□□□□ -1.77
CCDC61Q9Y6R9 Y_RNA.283-201ENST00000364798 112 ntBASIC3.99□□□□□ -1.77
CCDC61Q9Y6R9 RNU6-243P-201ENST00000391140 107 ntBASIC3.99□□□□□ -1.77
CCDC61Q9Y6R9 MIR942-201ENST00000401111 86 ntBASIC3.99□□□□□ -1.77
CCDC61Q9Y6R9 AC005908.1-201ENST00000468701 347 ntBASIC3.99□□□□□ -1.77
CCDC61Q9Y6R9 SNORA74.3-201ENST00000517108 154 ntBASIC3.99□□□□□ -1.77
CCDC61Q9Y6R9 RNU4ATAC9P-201ENST00000517146 126 ntBASIC3.99□□□□□ -1.77
CCDC61Q9Y6R9 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC3.99□□□□□ -1.77
CCDC61Q9Y6R9 MIR5047-201ENST00000579212 100 ntBASIC3.99□□□□□ -1.77
CCDC61Q9Y6R9 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.99□□□□□ -1.77
CCDC61Q9Y6R9 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC3.98□□□□□ -1.77
CCDC61Q9Y6R9 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
CCDC61Q9Y6R9 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
CCDC61Q9Y6R9 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC3.98□□□□□ -1.77
CCDC61Q9Y6R9 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC3.98□□□□□ -1.77
CCDC61Q9Y6R9 RNU1-101P-201ENST00000391171 127 ntBASIC3.98□□□□□ -1.77
CCDC61Q9Y6R9 RNU6-466P-201ENST00000391224 103 ntBASIC3.98□□□□□ -1.77
CCDC61Q9Y6R9 AL023284.1-201ENST00000403956 276 ntBASIC3.98□□□□□ -1.77
CCDC61Q9Y6R9 RNU6-75P-201ENST00000515944 104 ntBASIC3.98□□□□□ -1.77
CCDC61Q9Y6R9 RNU7-43P-201ENST00000516554 64 ntBASIC3.98□□□□□ -1.77
CCDC61Q9Y6R9 WWP1P1-201ENST00000466609 2769 ntBASIC3.98□□□□□ -1.77
CCDC61Q9Y6R9 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC3.98□□□□□ -1.77
CCDC61Q9Y6R9 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC3.97□□□□□ -1.77
CCDC61Q9Y6R9 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC3.97□□□□□ -1.77
CCDC61Q9Y6R9 RNU4-82P-201ENST00000362443 140 ntBASIC3.97□□□□□ -1.77
CCDC61Q9Y6R9 RNU6-949P-201ENST00000384040 107 ntBASIC3.97□□□□□ -1.77
CCDC61Q9Y6R9 Y_RNA.443-201ENST00000384135 111 ntBASIC3.97□□□□□ -1.77
CCDC61Q9Y6R9 RNU6-1254P-201ENST00000391266 104 ntBASIC3.97□□□□□ -1.77
CCDC61Q9Y6R9 AL662814.1-201ENST00000617364 121 ntBASIC3.97□□□□□ -1.77
CCDC61Q9Y6R9 AC008133.2-201ENST00000624540 351 ntBASIC3.97□□□□□ -1.77
CCDC61Q9Y6R9 AC093908.1-201ENST00000623125 8092 ntBASIC3.97□□□□□ -1.77
CCDC61Q9Y6R9 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC3.97□□□□□ -1.77
CCDC61Q9Y6R9 AL161722.3-201ENST00000605789 2983 ntBASIC3.96□□□□□ -1.77
CCDC61Q9Y6R9 SNORD36A-201ENST00000362874 73 ntBASIC3.96□□□□□ -1.78
CCDC61Q9Y6R9 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC3.96□□□□□ -1.78
CCDC61Q9Y6R9 RNA5SP274-201ENST00000410484 108 ntBASIC3.96□□□□□ -1.78
CCDC61Q9Y6R9 BX276092.1-201ENST00000427368 251 ntBASIC3.96□□□□□ -1.78
CCDC61Q9Y6R9 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC3.96□□□□□ -1.78
CCDC61Q9Y6R9 AC138749.4-201ENST00000563970 127 ntBASIC3.96□□□□□ -1.78
CCDC61Q9Y6R9 MIR3945-201ENST00000581853 98 ntBASIC3.96□□□□□ -1.78
CCDC61Q9Y6R9 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
CCDC61Q9Y6R9 SNORD109B-201ENST00000458961 67 ntBASIC3.95□□□□□ -1.78
CCDC61Q9Y6R9 SNORD109A-201ENST00000459128 67 ntBASIC3.95□□□□□ -1.78
CCDC61Q9Y6R9 MIR5094-201ENST00000578766 85 ntBASIC3.95□□□□□ -1.78
CCDC61Q9Y6R9 AL513423.1-201ENST00000621695 132 ntBASIC3.95□□□□□ -1.78
CCDC61Q9Y6R9 AC103706.3-201ENST00000636297 85 ntBASIC3.95□□□□□ -1.78
CCDC61Q9Y6R9 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC3.95□□□□□ -1.78
CCDC61Q9Y6R9 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
CCDC61Q9Y6R9 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC3.95□□□□□ -1.78
CCDC61Q9Y6R9 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
CCDC61Q9Y6R9 RNU6-220P-201ENST00000390919 107 ntBASIC3.94□□□□□ -1.78
CCDC61Q9Y6R9 RHEBP3-201ENST00000411920 351 ntBASIC3.94□□□□□ -1.78
CCDC61Q9Y6R9 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC3.94□□□□□ -1.78
CCDC61Q9Y6R9 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC3.94□□□□□ -1.78
CCDC61Q9Y6R9 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
CCDC61Q9Y6R9 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
CCDC61Q9Y6R9 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC3.93□□□□□ -1.78
CCDC61Q9Y6R9 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC3.93□□□□□ -1.78
CCDC61Q9Y6R9 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC3.93□□□□□ -1.78
CCDC61Q9Y6R9 MIRLET7F1-201ENST00000362202 87 ntBASIC3.93□□□□□ -1.78
CCDC61Q9Y6R9 RNU6-330P-201ENST00000363015 107 ntBASIC3.93□□□□□ -1.78
CCDC61Q9Y6R9 SNORD56.3-201ENST00000363507 71 ntBASIC3.93□□□□□ -1.78
CCDC61Q9Y6R9 RNU6-154P-201ENST00000384306 106 ntBASIC3.93□□□□□ -1.78
CCDC61Q9Y6R9 MIR9-1-201ENST00000385198 89 ntBASIC3.93□□□□□ -1.78
CCDC61Q9Y6R9 MIR660-201ENST00000385235 97 ntBASIC3.93□□□□□ -1.78
CCDC61Q9Y6R9 HMGN2P39-201ENST00000398005 273 ntBASIC3.93□□□□□ -1.78
CCDC61Q9Y6R9 AC092628.1-201ENST00000436250 252 ntBASIC3.93□□□□□ -1.78
CCDC61Q9Y6R9 SNORA64.4-201ENST00000516632 81 ntBASIC3.93□□□□□ -1.78
CCDC61Q9Y6R9 AC026271.5-201ENST00000577873 130 ntBASIC3.93□□□□□ -1.78
CCDC61Q9Y6R9 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
CCDC61Q9Y6R9 AC131280.1-202ENST00000624067 4211 ntBASIC3.93□□□□□ -1.78
CCDC61Q9Y6R9 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
CCDC61Q9Y6R9 MAPK10-322ENST00000641485 4530 ntBASIC3.92□□□□□ -1.78
CCDC61Q9Y6R9 AL161431.1-201ENST00000618966 4205 ntBASIC3.92□□□□□ -1.78
CCDC61Q9Y6R9 SNORD115-3-201ENST00000363100 82 ntBASIC3.92□□□□□ -1.78
CCDC61Q9Y6R9 U6.109-201ENST00000636749 87 ntBASIC3.92□□□□□ -1.78
CCDC61Q9Y6R9 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
CCDC61Q9Y6R9 MIR423-201ENST00000362201 94 ntBASIC3.91□□□□□ -1.78
CCDC61Q9Y6R9 MIR516A2-201ENST00000384888 90 ntBASIC3.91□□□□□ -1.78
CCDC61Q9Y6R9 MIR516A1-201ENST00000385033 90 ntBASIC3.91□□□□□ -1.78
CCDC61Q9Y6R9 MIR518E-201ENST00000385252 88 ntBASIC3.91□□□□□ -1.78
CCDC61Q9Y6R9 MIR4511-201ENST00000582784 87 ntBASIC3.91□□□□□ -1.78
CCDC61Q9Y6R9 AL627230.6-201ENST00000611129 280 ntBASIC3.91□□□□□ -1.78
CCDC61Q9Y6R9 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.91□□□□□ -1.78
CCDC61Q9Y6R9 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC3.91□□□□□ -1.78
CCDC61Q9Y6R9 EVI5-208ENST00000540033 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.91□□□□□ -1.78
CCDC61Q9Y6R9 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC3.9□□□□□ -1.78
CCDC61Q9Y6R9 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC3.9□□□□□ -1.78
CCDC61Q9Y6R9 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC3.9□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 203.5 ms