Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 SNORD24-201ENST00000383884 75 ntBASIC1□□□□□ -2.25
PDLIM3Q53GG5 Y_RNA.515-201ENST00000384535 112 ntBASIC1□□□□□ -2.25
PDLIM3Q53GG5 RNA5SP95-201ENST00000410319 137 ntBASIC1□□□□□ -2.25
PDLIM3Q53GG5 RNU6-938P-201ENST00000411285 103 ntBASIC1□□□□□ -2.25
PDLIM3Q53GG5 AC006461.1-201ENST00000412637 326 ntBASIC1□□□□□ -2.25
PDLIM3Q53GG5 AL591704.2-201ENST00000421658 181 ntBASIC1□□□□□ -2.25
PDLIM3Q53GG5 AC098934.3-201ENST00000430450 190 ntBASIC1□□□□□ -2.25
PDLIM3Q53GG5 RPS26P48-201ENST00000491713 339 ntBASIC1□□□□□ -2.25
PDLIM3Q53GG5 SNORD79.1-201ENST00000516069 84 ntBASIC1□□□□□ -2.25
PDLIM3Q53GG5 RNA5SP153-201ENST00000516498 76 ntBASIC1□□□□□ -2.25
PDLIM3Q53GG5 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC1□□□□□ -2.25
PDLIM3Q53GG5 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC1□□□□□ -2.25
PDLIM3Q53GG5 RNU6-654P-201ENST00000364373 107 ntBASIC0.99□□□□□ -2.25
PDLIM3Q53GG5 Y_RNA.297-201ENST00000364950 91 ntBASIC0.99□□□□□ -2.25
PDLIM3Q53GG5 SNORA80D-201ENST00000384488 135 ntBASIC0.99□□□□□ -2.25
PDLIM3Q53GG5 AC063976.4-201ENST00000421971 163 ntBASIC0.99□□□□□ -2.25
PDLIM3Q53GG5 SEPT7P4-201ENST00000437076 306 ntBASIC0.99□□□□□ -2.25
PDLIM3Q53GG5 AC002429.1-201ENST00000437672 148 ntBASIC0.99□□□□□ -2.25
PDLIM3Q53GG5 SNORA18.4-201ENST00000516440 124 ntBASIC0.99□□□□□ -2.25
PDLIM3Q53GG5 RNU6-126P-201ENST00000516685 103 ntBASIC0.99□□□□□ -2.25
PDLIM3Q53GG5 RNA5SP330-201ENST00000517096 96 ntBASIC0.99□□□□□ -2.25
PDLIM3Q53GG5 PRELID3BP2-201ENST00000605362 201 ntBASIC0.99□□□□□ -2.25
PDLIM3Q53GG5 AC134878.1-201ENST00000619901 243 ntBASIC0.99□□□□□ -2.25
PDLIM3Q53GG5 AL391516.1-201ENST00000554380 2449 ntBASIC0.98□□□□□ -2.25
PDLIM3Q53GG5 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.98□□□□□ -2.25
PDLIM3Q53GG5 Y_RNA.412-201ENST00000384001 104 ntBASIC0.98□□□□□ -2.25
PDLIM3Q53GG5 SNORA27-201ENST00000384323 126 ntBASIC0.98□□□□□ -2.25
PDLIM3Q53GG5 RNU6-918P-201ENST00000391219 106 ntBASIC0.98□□□□□ -2.25
PDLIM3Q53GG5 RNU6ATAC23P-201ENST00000408448 123 ntBASIC0.98□□□□□ -2.25
PDLIM3Q53GG5 MIR1285-1-201ENST00000408593 84 ntBASIC0.98□□□□□ -2.25
PDLIM3Q53GG5 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC0.98□□□□□ -2.25
PDLIM3Q53GG5 MRPL35P3-201ENST00000421557 364 ntBASIC0.98□□□□□ -2.25
PDLIM3Q53GG5 UBL5P1-201ENST00000507979 193 ntBASIC0.98□□□□□ -2.25
PDLIM3Q53GG5 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC0.98□□□□□ -2.25
PDLIM3Q53GG5 AC009779.6-201ENST00000603972 165 ntBASIC0.98□□□□□ -2.25
PDLIM3Q53GG5 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC0.98□□□□□ -2.25
PDLIM3Q53GG5 RNU6-1336P-201ENST00000383886 109 ntBASIC0.97□□□□□ -2.25
PDLIM3Q53GG5 RNU6-1189P-201ENST00000383958 107 ntBASIC0.97□□□□□ -2.25
PDLIM3Q53GG5 Y_RNA.537-201ENST00000384626 109 ntBASIC0.97□□□□□ -2.25
PDLIM3Q53GG5 Y_RNA.552-201ENST00000384665 112 ntBASIC0.97□□□□□ -2.25
PDLIM3Q53GG5 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC0.97□□□□□ -2.25
PDLIM3Q53GG5 SNORD77.3-201ENST00000391113 65 ntBASIC0.97□□□□□ -2.25
PDLIM3Q53GG5 AC087499.4-201ENST00000448505 178 ntBASIC0.97□□□□□ -2.25
PDLIM3Q53GG5 RNU7-21P-201ENST00000459430 62 ntBASIC0.97□□□□□ -2.25
PDLIM3Q53GG5 SNORD124-201ENST00000459577 104 ntBASIC0.97□□□□□ -2.25
PDLIM3Q53GG5 AL627230.5-201ENST00000619807 58 ntBASIC0.97□□□□□ -2.25
PDLIM3Q53GG5 MIR6086-201ENST00000638065 55 ntBASIC0.97□□□□□ -2.25
PDLIM3Q53GG5 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC0.96□□□□□ -2.26
PDLIM3Q53GG5 SNORD115-34-201ENST00000362441 82 ntBASIC0.96□□□□□ -2.26
PDLIM3Q53GG5 SNORD115-12-201ENST00000362583 82 ntBASIC0.96□□□□□ -2.26
PDLIM3Q53GG5 SNORD115-29-201ENST00000362834 82 ntBASIC0.96□□□□□ -2.26
PDLIM3Q53GG5 SNORD115-9-201ENST00000362912 82 ntBASIC0.96□□□□□ -2.26
PDLIM3Q53GG5 SNORD115-21-201ENST00000362963 81 ntBASIC0.96□□□□□ -2.26
PDLIM3Q53GG5 SNORD115-14-201ENST00000363090 81 ntBASIC0.96□□□□□ -2.26
PDLIM3Q53GG5 SNORD115-13-201ENST00000363358 82 ntBASIC0.96□□□□□ -2.26
PDLIM3Q53GG5 SNORD115-41-201ENST00000363608 82 ntBASIC0.96□□□□□ -2.26
PDLIM3Q53GG5 SNORD115-11-201ENST00000363616 82 ntBASIC0.96□□□□□ -2.26
PDLIM3Q53GG5 SNORD115-5-201ENST00000363633 82 ntBASIC0.96□□□□□ -2.26
PDLIM3Q53GG5 SNORD115-39-201ENST00000363694 82 ntBASIC0.96□□□□□ -2.26
PDLIM3Q53GG5 SNORD115-4-201ENST00000363810 82 ntBASIC0.96□□□□□ -2.26
PDLIM3Q53GG5 SNORD115-16-201ENST00000363887 82 ntBASIC0.96□□□□□ -2.26
PDLIM3Q53GG5 SNORD115-6-201ENST00000363942 82 ntBASIC0.96□□□□□ -2.26
PDLIM3Q53GG5 SNORD115-42-201ENST00000364273 82 ntBASIC0.96□□□□□ -2.26
PDLIM3Q53GG5 SNORD115-15-201ENST00000364809 81 ntBASIC0.96□□□□□ -2.26
PDLIM3Q53GG5 SNORD115-1-201ENST00000364961 82 ntBASIC0.96□□□□□ -2.26
PDLIM3Q53GG5 SNORD115-26-201ENST00000365067 82 ntBASIC0.96□□□□□ -2.26
PDLIM3Q53GG5 SNORD115-10-201ENST00000365073 81 ntBASIC0.96□□□□□ -2.26
PDLIM3Q53GG5 SNORD115-43-201ENST00000365503 82 ntBASIC0.96□□□□□ -2.26
PDLIM3Q53GG5 SNORD115-36-201ENST00000365629 82 ntBASIC0.96□□□□□ -2.26
PDLIM3Q53GG5 Y_RNA.521-201ENST00000384560 114 ntBASIC0.96□□□□□ -2.26
PDLIM3Q53GG5 SNORA40.5-201ENST00000391061 128 ntBASIC0.96□□□□□ -2.26
PDLIM3Q53GG5 MIR1302-7-201ENST00000408841 72 ntBASIC0.96□□□□□ -2.26
PDLIM3Q53GG5 Y_RNA.793-201ENST00000411222 111 ntBASIC0.96□□□□□ -2.26
PDLIM3Q53GG5 MTND5P15-201ENST00000434246 349 ntBASIC0.96□□□□□ -2.26
PDLIM3Q53GG5 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC0.96□□□□□ -2.26
PDLIM3Q53GG5 RPS29P28-201ENST00000446439 141 ntBASIC0.96□□□□□ -2.26
PDLIM3Q53GG5 RNU7-90P-201ENST00000459216 62 ntBASIC0.96□□□□□ -2.26
PDLIM3Q53GG5 AC087343.1-201ENST00000477341 475 ntBASIC0.96□□□□□ -2.26
PDLIM3Q53GG5 MIR378D2-201ENST00000580636 98 ntBASIC0.96□□□□□ -2.26
PDLIM3Q53GG5 MIR4661-201ENST00000582720 75 ntBASIC0.96□□□□□ -2.26
PDLIM3Q53GG5 AP000942.4-201ENST00000604811 241 ntBASIC0.96□□□□□ -2.26
PDLIM3Q53GG5 SNORD115-40-201ENST00000606510 82 ntBASIC0.96□□□□□ -2.26
PDLIM3Q53GG5 SEPT14P17-201ENST00000617978 177 ntBASIC0.96□□□□□ -2.26
PDLIM3Q53GG5 MIR6516-201ENST00000630554 81 ntBASIC0.96□□□□□ -2.26
PDLIM3Q53GG5 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC0.96□□□□□ -2.26
PDLIM3Q53GG5 Y_RNA.121-201ENST00000363309 113 ntBASIC0.95□□□□□ -2.26
PDLIM3Q53GG5 Y_RNA.294-201ENST00000364916 102 ntBASIC0.95□□□□□ -2.26
PDLIM3Q53GG5 Y_RNA.351-201ENST00000365436 96 ntBASIC0.95□□□□□ -2.26
PDLIM3Q53GG5 RNU6-643P-201ENST00000384018 107 ntBASIC0.95□□□□□ -2.26
PDLIM3Q53GG5 SNORA2B-201ENST00000384583 137 ntBASIC0.95□□□□□ -2.26
PDLIM3Q53GG5 RNU6-205P-201ENST00000390858 107 ntBASIC0.95□□□□□ -2.26
PDLIM3Q53GG5 RNA5SP127-201ENST00000411051 133 ntBASIC0.95□□□□□ -2.26
PDLIM3Q53GG5 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC0.95□□□□□ -2.26
PDLIM3Q53GG5 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC0.95□□□□□ -2.26
PDLIM3Q53GG5 Y_RNA.644-201ENST00000459006 113 ntBASIC0.95□□□□□ -2.26
PDLIM3Q53GG5 RNU2-11P-201ENST00000459191 187 ntBASIC0.95□□□□□ -2.26
PDLIM3Q53GG5 RPS29P24-201ENST00000486345 171 ntBASIC0.95□□□□□ -2.26
PDLIM3Q53GG5 RNU6-1219P-201ENST00000516143 112 ntBASIC0.95□□□□□ -2.26
PDLIM3Q53GG5 Y_RNA.674-201ENST00000516362 113 ntBASIC0.95□□□□□ -2.26
PDLIM3Q53GG5 SNORD116-25-201ENST00000516517 92 ntBASIC0.95□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 171.1 ms