Protein–RNA interactions for Protein: P48436

SOX9, Transcription factor SOX-9, humanhuman

Predictions only

Length 509 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX9P48436 MIR3914-2-201ENST00000637339 95 ntBASIC2.09□□□□□ -2.07
SOX9P48436 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC2.09□□□□□ -2.08
SOX9P48436 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC2.08□□□□□ -2.08
SOX9P48436 SNORD1A-201ENST00000364968 72 ntBASIC2.08□□□□□ -2.08
SOX9P48436 SNORD41-201ENST00000386967 70 ntBASIC2.08□□□□□ -2.08
SOX9P48436 MIR759-201ENST00000390224 91 ntBASIC2.08□□□□□ -2.08
SOX9P48436 SNORA48.3-201ENST00000391081 134 ntBASIC2.08□□□□□ -2.08
SOX9P48436 Y_RNA.629-201ENST00000411368 105 ntBASIC2.08□□□□□ -2.08
SOX9P48436 AL022718.1-201ENST00000412004 84 ntBASIC2.08□□□□□ -2.08
SOX9P48436 RNU7-164P-201ENST00000459221 62 ntBASIC2.08□□□□□ -2.08
SOX9P48436 AC108729.3-201ENST00000513484 108 ntBASIC2.08□□□□□ -2.08
SOX9P48436 MIR4305-201ENST00000583252 102 ntBASIC2.08□□□□□ -2.08
SOX9P48436 AP000942.3-201ENST00000603702 160 ntBASIC2.08□□□□□ -2.08
SOX9P48436 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC2.08□□□□□ -2.08
SOX9P48436 Y_RNA.226-201ENST00000364337 114 ntBASIC2.07□□□□□ -2.08
SOX9P48436 AC008834.1-201ENST00000511612 175 ntBASIC2.07□□□□□ -2.08
SOX9P48436 MIR3683-201ENST00000580847 82 ntBASIC2.07□□□□□ -2.08
SOX9P48436 HSPE1P19-201ENST00000603327 295 ntBASIC2.07□□□□□ -2.08
SOX9P48436 AL121890.5-201ENST00000620848 304 ntBASIC2.07□□□□□ -2.08
SOX9P48436 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC2.06□□□□□ -2.08
SOX9P48436 RNU6-1290P-201ENST00000362957 109 ntBASIC2.06□□□□□ -2.08
SOX9P48436 SNORA1.1-201ENST00000364671 133 ntBASIC2.06□□□□□ -2.08
SOX9P48436 Y_RNA.273-201ENST00000364703 102 ntBASIC2.06□□□□□ -2.08
SOX9P48436 Y_RNA.528-201ENST00000384575 108 ntBASIC2.06□□□□□ -2.08
SOX9P48436 RNU6-1319P-201ENST00000390855 104 ntBASIC2.06□□□□□ -2.08
SOX9P48436 RNU6-747P-201ENST00000390928 104 ntBASIC2.06□□□□□ -2.08
SOX9P48436 RNU6-241P-201ENST00000391148 104 ntBASIC2.06□□□□□ -2.08
SOX9P48436 RNU6-177P-201ENST00000411257 104 ntBASIC2.06□□□□□ -2.08
SOX9P48436 AC003989.2-201ENST00000440224 169 ntBASIC2.06□□□□□ -2.08
SOX9P48436 RNU7-45P-201ENST00000459460 63 ntBASIC2.06□□□□□ -2.08
SOX9P48436 RPL30P7-201ENST00000479312 323 ntBASIC2.06□□□□□ -2.08
SOX9P48436 MIR3935-201ENST00000583472 104 ntBASIC2.06□□□□□ -2.08
SOX9P48436 AL359851.1-201ENST00000569460 4997 ntBASIC2.06□□□□□ -2.08
SOX9P48436 MIR302D-201ENST00000362275 68 ntBASIC2.05□□□□□ -2.08
SOX9P48436 RNU6-1056P-201ENST00000383996 107 ntBASIC2.05□□□□□ -2.08
SOX9P48436 Y_RNA.563-201ENST00000384707 108 ntBASIC2.05□□□□□ -2.08
SOX9P48436 AC019129.1-201ENST00000403786 261 ntBASIC2.05□□□□□ -2.08
SOX9P48436 RNA5SP338-201ENST00000410495 85 ntBASIC2.05□□□□□ -2.08
SOX9P48436 AL445685.2-201ENST00000422551 342 ntBASIC2.05□□□□□ -2.08
SOX9P48436 RNU7-41P-201ENST00000515917 61 ntBASIC2.05□□□□□ -2.08
SOX9P48436 RNU6-250P-201ENST00000516958 103 ntBASIC2.05□□□□□ -2.08
SOX9P48436 IGKV1-22-201ENST00000524313 326 ntBASIC2.05□□□□□ -2.08
SOX9P48436 AL020996.3-201ENST00000606617 222 ntBASIC2.05□□□□□ -2.08
SOX9P48436 RNU6-834P-201ENST00000362367 110 ntBASIC2.04□□□□□ -2.08
SOX9P48436 Y_RNA.213-201ENST00000364178 111 ntBASIC2.04□□□□□ -2.08
SOX9P48436 Y_RNA.298-201ENST00000364960 107 ntBASIC2.04□□□□□ -2.08
SOX9P48436 RNU6-913P-201ENST00000390913 95 ntBASIC2.04□□□□□ -2.08
SOX9P48436 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC2.04□□□□□ -2.08
SOX9P48436 RNU6-735P-201ENST00000410612 107 ntBASIC2.04□□□□□ -2.08
SOX9P48436 AC104435.1-201ENST00000483483 166 ntBASIC2.04□□□□□ -2.08
SOX9P48436 RNY4P20-201ENST00000516678 93 ntBASIC2.04□□□□□ -2.08
SOX9P48436 MIR4422-201ENST00000581938 83 ntBASIC2.04□□□□□ -2.08
SOX9P48436 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC2.04□□□□□ -2.08
SOX9P48436 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC2.04□□□□□ -2.08
SOX9P48436 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC2.03□□□□□ -2.08
SOX9P48436 MTND5P18-201ENST00000445624 1801 ntBASIC2.03□□□□□ -2.08
SOX9P48436 RNA5SP37-201ENST00000365420 130 ntBASIC2.03□□□□□ -2.08
SOX9P48436 MIR548A3-201ENST00000385297 97 ntBASIC2.03□□□□□ -2.08
SOX9P48436 SNORA17.3-201ENST00000391159 129 ntBASIC2.03□□□□□ -2.08
SOX9P48436 MIR1287-201ENST00000408492 90 ntBASIC2.03□□□□□ -2.08
SOX9P48436 Y_RNA.630-201ENST00000411370 108 ntBASIC2.03□□□□□ -2.08
SOX9P48436 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC2.03□□□□□ -2.08
SOX9P48436 RPS3AP1-201ENST00000413190 320 ntBASIC2.03□□□□□ -2.08
SOX9P48436 COX6CP6-201ENST00000490840 228 ntBASIC2.03□□□□□ -2.08
SOX9P48436 RNU6-1053P-201ENST00000515930 101 ntBASIC2.03□□□□□ -2.08
SOX9P48436 CYP3A52P-201ENST00000563326 91 ntBASIC2.03□□□□□ -2.08
SOX9P48436 MTND5P34-201ENST00000568888 325 ntBASIC2.03□□□□□ -2.08
SOX9P48436 MIR5002-201ENST00000584713 97 ntBASIC2.03□□□□□ -2.08
SOX9P48436 AL670379.3-201ENST00000605040 251 ntBASIC2.03□□□□□ -2.08
SOX9P48436 MIR6717-201ENST00000622747 73 ntBASIC2.03□□□□□ -2.08
SOX9P48436 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC2.03□□□□□ -2.08
SOX9P48436 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC2.02□□□□□ -2.09
SOX9P48436 SNORA22.1-201ENST00000362701 134 ntBASIC2.02□□□□□ -2.09
SOX9P48436 RNU6-1064P-201ENST00000410626 104 ntBASIC2.02□□□□□ -2.09
SOX9P48436 RNA5SP144-201ENST00000410846 116 ntBASIC2.02□□□□□ -2.09
SOX9P48436 AC108667.1-201ENST00000428618 249 ntBASIC2.02□□□□□ -2.09
SOX9P48436 AC027119.1-201ENST00000440877 241 ntBASIC2.02□□□□□ -2.09
SOX9P48436 MIR5089-201ENST00000580047 84 ntBASIC2.02□□□□□ -2.09
SOX9P48436 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC2.02□□□□□ -2.09
SOX9P48436 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC2.02□□□□□ -2.09
SOX9P48436 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC2.02□□□□□ -2.09
SOX9P48436 Y_RNA.354-201ENST00000365448 111 ntBASIC2.01□□□□□ -2.09
SOX9P48436 MIRLET7F2-201ENST00000385277 83 ntBASIC2.01□□□□□ -2.09
SOX9P48436 RNU7-123P-201ENST00000515911 60 ntBASIC2.01□□□□□ -2.09
SOX9P48436 SNORD33.1-201ENST00000516213 88 ntBASIC2.01□□□□□ -2.09
SOX9P48436 MIR4498-201ENST00000577599 66 ntBASIC2.01□□□□□ -2.09
SOX9P48436 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC2.01□□□□□ -2.09
SOX9P48436 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC2.01□□□□□ -2.09
SOX9P48436 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC2□□□□□ -2.09
SOX9P48436 RNA5SP138-201ENST00000365098 114 ntBASIC2□□□□□ -2.09
SOX9P48436 RNU6-476P-201ENST00000384726 107 ntBASIC2□□□□□ -2.09
SOX9P48436 RNU1-78P-201ENST00000391248 165 ntBASIC2□□□□□ -2.09
SOX9P48436 RNU6-1190P-201ENST00000410811 104 ntBASIC2□□□□□ -2.09
SOX9P48436 RNU6-717P-201ENST00000459076 104 ntBASIC2□□□□□ -2.09
SOX9P48436 Y_RNA.649-201ENST00000459077 103 ntBASIC2□□□□□ -2.09
SOX9P48436 RNU7-113P-201ENST00000459273 62 ntBASIC2□□□□□ -2.09
SOX9P48436 AL096861.1-201ENST00000610899 123 ntBASIC2□□□□□ -2.09
SOX9P48436 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC1.99□□□□□ -2.09
SOX9P48436 MIR934-201ENST00000401241 83 ntBASIC1.99□□□□□ -2.09
SOX9P48436 HMGN1P33-201ENST00000432945 451 ntBASIC1.99□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 14 ms