Protein–RNA interactions for Protein: P23763

VAMP1, Vesicle-associated membrane protein 1, humanhuman

Predictions only

Length 118 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP1P23763 SNORA59A-201ENST00000459326 152 ntBASIC1.83□□□□□ -2.12
VAMP1P23763 RNA5SP33-201ENST00000516687 98 ntBASIC1.83□□□□□ -2.12
VAMP1P23763 IGHVII-40-1-201ENST00000517316 58 ntBASIC1.83□□□□□ -2.12
VAMP1P23763 MIR5007-201ENST00000583098 95 ntBASIC1.83□□□□□ -2.12
VAMP1P23763 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC1.83□□□□□ -2.12
VAMP1P23763 MIR6516-201ENST00000630554 81 ntBASIC1.83□□□□□ -2.12
VAMP1P23763 AL137790.1-201ENST00000634283 177 ntBASIC1.83□□□□□ -2.12
VAMP1P23763 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1.83□□□□□ -2.12
VAMP1P23763 Y_RNA.213-201ENST00000364178 111 ntBASIC1.82□□□□□ -2.12
VAMP1P23763 RNA5SP160-201ENST00000364866 120 ntBASIC1.82□□□□□ -2.12
VAMP1P23763 RNU6ATAC3P-201ENST00000387974 126 ntBASIC1.82□□□□□ -2.12
VAMP1P23763 POLR2J4-204ENST00000418424 324 ntBASIC1.82□□□□□ -2.12
VAMP1P23763 RNU7-123P-201ENST00000515911 60 ntBASIC1.82□□□□□ -2.12
VAMP1P23763 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC1.82□□□□□ -2.12
VAMP1P23763 U2.22-201ENST00000636441 106 ntBASIC1.82□□□□□ -2.12
VAMP1P23763 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.81□□□□□ -2.12
VAMP1P23763 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC1.81□□□□□ -2.12
VAMP1P23763 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC1.81□□□□□ -2.12
VAMP1P23763 AL157777.2-201ENST00000258070 137 ntBASIC1.81□□□□□ -2.12
VAMP1P23763 Y_RNA.171-201ENST00000363760 102 ntBASIC1.81□□□□□ -2.12
VAMP1P23763 Y_RNA.346-201ENST00000365385 112 ntBASIC1.81□□□□□ -2.12
VAMP1P23763 SNORD116-14-201ENST00000383894 92 ntBASIC1.81□□□□□ -2.12
VAMP1P23763 SNORD116-17-201ENST00000383929 92 ntBASIC1.81□□□□□ -2.12
VAMP1P23763 SNORD116-15-201ENST00000384445 92 ntBASIC1.81□□□□□ -2.12
VAMP1P23763 SNORD116-19-201ENST00000384729 92 ntBASIC1.81□□□□□ -2.12
VAMP1P23763 SNORA19-201ENST00000384737 128 ntBASIC1.81□□□□□ -2.12
VAMP1P23763 MIR196B-201ENST00000384852 84 ntBASIC1.81□□□□□ -2.12
VAMP1P23763 MT-TN-201ENST00000387400 73 ntBASIC1.81□□□□□ -2.12
VAMP1P23763 RNU7-62P-201ENST00000458856 62 ntBASIC1.81□□□□□ -2.12
VAMP1P23763 RNU7-90P-201ENST00000459216 62 ntBASIC1.81□□□□□ -2.12
VAMP1P23763 RNU6-772P-201ENST00000516042 105 ntBASIC1.81□□□□□ -2.12
VAMP1P23763 AC019288.1-201ENST00000557918 224 ntBASIC1.81□□□□□ -2.12
VAMP1P23763 MIR3122-201ENST00000577243 73 ntBASIC1.81□□□□□ -2.12
VAMP1P23763 AC046143.2-201ENST00000609789 160 ntBASIC1.81□□□□□ -2.12
VAMP1P23763 AC025166.1-201ENST00000612411 163 ntBASIC1.81□□□□□ -2.12
VAMP1P23763 MIR6132-201ENST00000622083 109 ntBASIC1.81□□□□□ -2.12
VAMP1P23763 RNA5SP327-201ENST00000362494 101 ntBASIC1.8□□□□□ -2.12
VAMP1P23763 Y_RNA.299-201ENST00000364973 94 ntBASIC1.8□□□□□ -2.12
VAMP1P23763 SNORA25-201ENST00000384384 134 ntBASIC1.8□□□□□ -2.12
VAMP1P23763 Y_RNA.510-201ENST00000384511 114 ntBASIC1.8□□□□□ -2.12
VAMP1P23763 Y_RNA.528-201ENST00000384575 108 ntBASIC1.8□□□□□ -2.12
VAMP1P23763 Y_RNA.531-201ENST00000384589 121 ntBASIC1.8□□□□□ -2.12
VAMP1P23763 MIR128-1-201ENST00000384921 82 ntBASIC1.8□□□□□ -2.12
VAMP1P23763 SNORA75.2-201ENST00000391138 150 ntBASIC1.8□□□□□ -2.12
VAMP1P23763 SNORA75.3-201ENST00000391231 150 ntBASIC1.8□□□□□ -2.12
VAMP1P23763 MIR1302-7-201ENST00000408841 72 ntBASIC1.8□□□□□ -2.12
VAMP1P23763 RNU6-613P-201ENST00000410412 108 ntBASIC1.8□□□□□ -2.12
VAMP1P23763 RPS29P23-201ENST00000458635 123 ntBASIC1.8□□□□□ -2.12
VAMP1P23763 AC113410.1-201ENST00000505029 247 ntBASIC1.8□□□□□ -2.12
VAMP1P23763 RNU6-1333P-201ENST00000516162 93 ntBASIC1.8□□□□□ -2.12
VAMP1P23763 RNU2-35P-201ENST00000516446 142 ntBASIC1.8□□□□□ -2.12
VAMP1P23763 AP003716.2-201ENST00000528260 108 ntBASIC1.8□□□□□ -2.12
VAMP1P23763 AC004812.1-201ENST00000540773 146 ntBASIC1.8□□□□□ -2.12
VAMP1P23763 MIR6841-201ENST00000637129 72 ntBASIC1.8□□□□□ -2.12
VAMP1P23763 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC1.8□□□□□ -2.12
VAMP1P23763 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC1.8□□□□□ -2.12
VAMP1P23763 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.79□□□□□ -2.12
VAMP1P23763 AC008163.1-202ENST00000636004 2889 ntBASIC1.79□□□□□ -2.12
VAMP1P23763 SNORA5B-201ENST00000363786 132 ntBASIC1.79□□□□□ -2.12
VAMP1P23763 RNU6-654P-201ENST00000364373 107 ntBASIC1.79□□□□□ -2.12
VAMP1P23763 SNORD58C-201ENST00000365223 64 ntBASIC1.79□□□□□ -2.12
VAMP1P23763 MIR588-201ENST00000384900 83 ntBASIC1.79□□□□□ -2.12
VAMP1P23763 SNORD12C-201ENST00000386307 89 ntBASIC1.79□□□□□ -2.12
VAMP1P23763 RNA5SP95-201ENST00000410319 137 ntBASIC1.79□□□□□ -2.12
VAMP1P23763 RNU6-994P-201ENST00000410507 111 ntBASIC1.79□□□□□ -2.12
VAMP1P23763 AC108938.1-201ENST00000451204 136 ntBASIC1.79□□□□□ -2.12
VAMP1P23763 RNU7-107P-201ENST00000459121 61 ntBASIC1.79□□□□□ -2.12
VAMP1P23763 AC023827.1-201ENST00000569247 97 ntBASIC1.79□□□□□ -2.12
VAMP1P23763 Y_RNA.218-201ENST00000364218 104 ntBASIC1.78□□□□□ -2.12
VAMP1P23763 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC1.78□□□□□ -2.12
VAMP1P23763 AL512326.2-201ENST00000426359 151 ntBASIC1.78□□□□□ -2.12
VAMP1P23763 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC1.78□□□□□ -2.12
VAMP1P23763 RNU6-781P-201ENST00000516377 101 ntBASIC1.78□□□□□ -2.12
VAMP1P23763 RNU7-40P-201ENST00000516397 64 ntBASIC1.78□□□□□ -2.12
VAMP1P23763 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC1.77□□□□□ -2.13
VAMP1P23763 Y_RNA.127-201ENST00000363386 109 ntBASIC1.77□□□□□ -2.13
VAMP1P23763 Y_RNA.280-201ENST00000364765 112 ntBASIC1.77□□□□□ -2.13
VAMP1P23763 SNORA18-201ENST00000384416 132 ntBASIC1.77□□□□□ -2.13
VAMP1P23763 SNORD12-201ENST00000391002 90 ntBASIC1.77□□□□□ -2.13
VAMP1P23763 SNORA48.3-201ENST00000391081 134 ntBASIC1.77□□□□□ -2.13
VAMP1P23763 SNORD77B-201ENST00000391112 67 ntBASIC1.77□□□□□ -2.13
VAMP1P23763 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.77□□□□□ -2.13
VAMP1P23763 Y_RNA.617-201ENST00000410920 90 ntBASIC1.77□□□□□ -2.13
VAMP1P23763 SNORD79.1-201ENST00000516069 84 ntBASIC1.77□□□□□ -2.13
VAMP1P23763 MIR4435-1-201ENST00000582552 80 ntBASIC1.77□□□□□ -2.13
VAMP1P23763 MIR5002-201ENST00000584713 97 ntBASIC1.77□□□□□ -2.13
VAMP1P23763 MIR26B-201ENST00000362251 77 ntBASIC1.76□□□□□ -2.13
VAMP1P23763 SNORD113.3-201ENST00000364630 78 ntBASIC1.76□□□□□ -2.13
VAMP1P23763 AC067940.1-201ENST00000458411 300 ntBASIC1.76□□□□□ -2.13
VAMP1P23763 RNU7-21P-201ENST00000459430 62 ntBASIC1.76□□□□□ -2.13
VAMP1P23763 RNU6-313P-201ENST00000516317 112 ntBASIC1.76□□□□□ -2.13
VAMP1P23763 RNU6-406P-201ENST00000516470 107 ntBASIC1.76□□□□□ -2.13
VAMP1P23763 MIR3162-201ENST00000581818 82 ntBASIC1.76□□□□□ -2.13
VAMP1P23763 AL359881.1-201ENST00000602916 267 ntBASIC1.76□□□□□ -2.13
VAMP1P23763 MIR6817-201ENST00000615588 66 ntBASIC1.76□□□□□ -2.13
VAMP1P23763 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.76□□□□□ -2.13
VAMP1P23763 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC1.75□□□□□ -2.13
VAMP1P23763 MIR377-201ENST00000362145 69 ntBASIC1.75□□□□□ -2.13
VAMP1P23763 SNORA32-201ENST00000384072 121 ntBASIC1.75□□□□□ -2.13
VAMP1P23763 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.75□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 261 ms