Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 RNU7-104P-201ENST00000459398 79 ntBASIC-1.15□□□□□ -2.59
TPM1P09493 RNU6-365P-201ENST00000517113 106 ntBASIC-1.15□□□□□ -2.59
TPM1P09493 DEFB131E-201ENST00000532329 154 ntBASIC-1.15□□□□□ -2.59
TPM1P09493 RNU4-58P-201ENST00000363192 141 ntBASIC-1.16□□□□□ -2.6
TPM1P09493 RNU4-80P-201ENST00000363200 141 ntBASIC-1.16□□□□□ -2.6
TPM1P09493 AC006210.1-201ENST00000424882 111 ntBASIC-1.16□□□□□ -2.6
TPM1P09493 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC-1.16□□□□□ -2.6
TPM1P09493 RNU6-531P-201ENST00000516694 104 ntBASIC-1.16□□□□□ -2.6
TPM1P09493 AC013417.1-201ENST00000549896 271 ntTSL 5 BASIC-1.16□□□□□ -2.6
TPM1P09493 MIR6507-201ENST00000613630 70 ntBASIC-1.16□□□□□ -2.6
TPM1P09493 RNU6-702P-201ENST00000364982 107 ntBASIC-1.17□□□□□ -2.6
TPM1P09493 SNORD110-201ENST00000408189 75 ntBASIC-1.17□□□□□ -2.6
TPM1P09493 MTND3P8-201ENST00000412909 339 ntBASIC-1.17□□□□□ -2.6
TPM1P09493 RPS29P8-201ENST00000445109 171 ntBASIC-1.17□□□□□ -2.6
TPM1P09493 NAMPTP3-201ENST00000569273 224 ntBASIC-1.17□□□□□ -2.6
TPM1P09493 AC138305.3-201ENST00000624988 240 ntBASIC-1.17□□□□□ -2.6
TPM1P09493 SNORA25.7-201ENST00000364375 127 ntBASIC-1.18□□□□□ -2.6
TPM1P09493 RNA5SP205-201ENST00000364653 136 ntBASIC-1.18□□□□□ -2.6
TPM1P09493 RNY1P13-201ENST00000365030 105 ntBASIC-1.18□□□□□ -2.6
TPM1P09493 Y_RNA.383-201ENST00000383855 97 ntBASIC-1.18□□□□□ -2.6
TPM1P09493 Y_RNA.573-201ENST00000384763 105 ntBASIC-1.18□□□□□ -2.6
TPM1P09493 RNA5SP480-201ENST00000516840 109 ntBASIC-1.18□□□□□ -2.6
TPM1P09493 AP003733.2-201ENST00000529409 171 ntBASIC-1.18□□□□□ -2.6
TPM1P09493 Y_RNA.772-201ENST00000606692 102 ntBASIC-1.18□□□□□ -2.6
TPM1P09493 AL391099.1-201ENST00000624635 187 ntBASIC-1.18□□□□□ -2.6
TPM1P09493 MIR6759-201ENST00000638110 65 ntBASIC-1.18□□□□□ -2.6
TPM1P09493 RNU4-84P-201ENST00000364200 139 ntBASIC-1.19□□□□□ -2.6
TPM1P09493 Y_RNA.295-201ENST00000364918 102 ntBASIC-1.19□□□□□ -2.6
TPM1P09493 Y_RNA.540-201ENST00000384638 111 ntBASIC-1.19□□□□□ -2.6
TPM1P09493 RNU6-21P-201ENST00000384710 107 ntBASIC-1.19□□□□□ -2.6
TPM1P09493 RNU5E-9P-201ENST00000411164 104 ntBASIC-1.19□□□□□ -2.6
TPM1P09493 SNORA25.13-201ENST00000516395 103 ntBASIC-1.19□□□□□ -2.6
TPM1P09493 RNA5SP403-201ENST00000363598 108 ntBASIC-1.2□□□□□ -2.6
TPM1P09493 Y_RNA.185-201ENST00000363894 100 ntBASIC-1.2□□□□□ -2.6
TPM1P09493 Y_RNA.351-201ENST00000365436 96 ntBASIC-1.2□□□□□ -2.6
TPM1P09493 Y_RNA.56-201ENST00000362798 112 ntBASIC-1.21□□□□□ -2.6
TPM1P09493 Y_RNA.270-201ENST00000364693 104 ntBASIC-1.21□□□□□ -2.6
TPM1P09493 Y_RNA.314-201ENST00000365114 102 ntBASIC-1.21□□□□□ -2.6
TPM1P09493 MIR516B1-201ENST00000385211 90 ntBASIC-1.21□□□□□ -2.6
TPM1P09493 BX276092.1-201ENST00000427368 251 ntBASIC-1.21□□□□□ -2.6
TPM1P09493 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC-1.21□□□□□ -2.6
TPM1P09493 MIR6841-201ENST00000637129 72 ntBASIC-1.21□□□□□ -2.6
TPM1P09493 MIR367-201ENST00000362299 68 ntBASIC-1.22□□□□□ -2.6
TPM1P09493 SNORD63-201ENST00000384262 68 ntBASIC-1.22□□□□□ -2.6
TPM1P09493 SNORA18-201ENST00000384416 132 ntBASIC-1.22□□□□□ -2.6
TPM1P09493 SNORA20-201ENST00000384662 132 ntBASIC-1.22□□□□□ -2.6
TPM1P09493 RNU6-1086P-201ENST00000410930 100 ntBASIC-1.22□□□□□ -2.6
TPM1P09493 RNA5SP285-201ENST00000516619 119 ntBASIC-1.22□□□□□ -2.6
TPM1P09493 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC-1.22□□□□□ -2.6
TPM1P09493 Y_RNA.66-201ENST00000362862 102 ntBASIC-1.23□□□□□ -2.61
TPM1P09493 SNORA8.3-201ENST00000384679 139 ntBASIC-1.23□□□□□ -2.61
TPM1P09493 RNU6-763P-201ENST00000390865 106 ntBASIC-1.23□□□□□ -2.61
TPM1P09493 RNU7-80P-201ENST00000459562 61 ntBASIC-1.23□□□□□ -2.61
TPM1P09493 AC010655.3-201ENST00000478818 450 ntBASIC-1.23□□□□□ -2.61
TPM1P09493 RNU6-397P-201ENST00000516226 104 ntBASIC-1.23□□□□□ -2.61
TPM1P09493 AC105081.1-201ENST00000617727 106 ntBASIC-1.23□□□□□ -2.61
TPM1P09493 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC-1.24□□□□□ -2.61
TPM1P09493 RNA5SP257-201ENST00000363023 116 ntBASIC-1.24□□□□□ -2.61
TPM1P09493 U8.6-201ENST00000364939 135 ntBASIC-1.24□□□□□ -2.61
TPM1P09493 MIR626-201ENST00000385032 94 ntBASIC-1.24□□□□□ -2.61
TPM1P09493 Y_RNA.646-201ENST00000410980 101 ntBASIC-1.24□□□□□ -2.61
TPM1P09493 MTCO2P24-201ENST00000515611 426 ntBASIC-1.24□□□□□ -2.61
TPM1P09493 RNU6-191P-201ENST00000516295 94 ntBASIC-1.24□□□□□ -2.61
TPM1P09493 Y_RNA.673-201ENST00000516306 88 ntBASIC-1.24□□□□□ -2.61
TPM1P09493 MIR4724-201ENST00000579485 89 ntBASIC-1.24□□□□□ -2.61
TPM1P09493 VN1R91P-201ENST00000594377 169 ntBASIC-1.24□□□□□ -2.61
TPM1P09493 AL356055.1-201ENST00000602528 446 ntBASIC-1.24□□□□□ -2.61
TPM1P09493 SNORA22.1-201ENST00000362701 134 ntBASIC-1.25□□□□□ -2.61
TPM1P09493 RNA5SP133-201ENST00000363368 119 ntBASIC-1.25□□□□□ -2.61
TPM1P09493 RNU6-509P-201ENST00000363519 107 ntBASIC-1.25□□□□□ -2.61
TPM1P09493 RNY3-201ENST00000365484 102 ntBASIC-1.25□□□□□ -2.61
TPM1P09493 Y_RNA.454-201ENST00000384224 113 ntBASIC-1.25□□□□□ -2.61
TPM1P09493 SNORD75.1-201ENST00000408373 60 ntBASIC-1.25□□□□□ -2.61
TPM1P09493 AC096644.2-201ENST00000429278 159 ntBASIC-1.25□□□□□ -2.61
TPM1P09493 AC011825.2-201ENST00000583138 553 ntTSL 4 BASIC-1.25□□□□□ -2.61
TPM1P09493 AP001180.6-201ENST00000584918 159 ntBASIC-1.25□□□□□ -2.61
TPM1P09493 AC013791.1-201ENST00000616619 62 ntBASIC-1.25□□□□□ -2.61
TPM1P09493 TRAJ28-201ENST00000390509 66 ntAPPRIS P1 BASIC-1.26□□□□□ -2.61
TPM1P09493 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC-1.26□□□□□ -2.61
TPM1P09493 AC009480.1-201ENST00000402410 412 ntTSL 3 BASIC-1.26□□□□□ -2.61
TPM1P09493 AC245505.1-201ENST00000556398 224 ntBASIC-1.26□□□□□ -2.61
TPM1P09493 AP005530.1-201ENST00000572608 567 ntTSL 3 BASIC-1.26□□□□□ -2.61
TPM1P09493 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC-1.26□□□□□ -2.61
TPM1P09493 AC091932.4-201ENST00000623386 200 ntBASIC-1.26□□□□□ -2.61
TPM1P09493 Y_RNA.41-201ENST00000362646 102 ntBASIC-1.27□□□□□ -2.61
TPM1P09493 Y_RNA.51-201ENST00000362725 102 ntBASIC-1.27□□□□□ -2.61
TPM1P09493 RNU6-310P-201ENST00000384655 107 ntBASIC-1.27□□□□□ -2.61
TPM1P09493 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC-1.27□□□□□ -2.61
TPM1P09493 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC-1.27□□□□□ -2.61
TPM1P09493 RNU6-890P-201ENST00000384121 107 ntBASIC-1.28□□□□□ -2.61
TPM1P09493 AC099799.1-201ENST00000439809 192 ntBASIC-1.28□□□□□ -2.61
TPM1P09493 RNA5SP484-201ENST00000458857 111 ntBASIC-1.28□□□□□ -2.61
TPM1P09493 Y_RNA.655-201ENST00000515919 96 ntBASIC-1.28□□□□□ -2.61
TPM1P09493 RN7SL660P-201ENST00000614852 299 ntBASIC-1.28□□□□□ -2.61
TPM1P09493 SNORD114-14-201ENST00000362723 75 ntBASIC-1.29□□□□□ -2.62
TPM1P09493 Y_RNA.458-201ENST00000384240 102 ntBASIC-1.29□□□□□ -2.62
TPM1P09493 RNU6-937P-201ENST00000384325 106 ntBASIC-1.29□□□□□ -2.62
TPM1P09493 Y_RNA.554-201ENST00000384672 102 ntBASIC-1.29□□□□□ -2.62
TPM1P09493 MTND1P14-201ENST00000427400 950 ntBASIC-1.29□□□□□ -2.62
TPM1P09493 MIR4436A-201ENST00000585278 85 ntBASIC-1.29□□□□□ -2.62
Retrieved 100 of 98,524 protein–RNA pairs in 274.1 ms