Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 DNAJC19P2-201ENST00000593340 302 ntBASIC0.91□□□□□ -2.26
HOXC4P09017 Y_RNA.778-201ENST00000620203 90 ntBASIC0.91□□□□□ -2.26
HOXC4P09017 MIR6844-201ENST00000637122 62 ntBASIC0.91□□□□□ -2.26
HOXC4P09017 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC0.9□□□□□ -2.26
HOXC4P09017 SNORA2.2-201ENST00000365473 135 ntBASIC0.9□□□□□ -2.27
HOXC4P09017 RNU6-597P-201ENST00000365620 102 ntBASIC0.9□□□□□ -2.27
HOXC4P09017 SNORD38C-201ENST00000384381 69 ntBASIC0.9□□□□□ -2.27
HOXC4P09017 SNORA25-201ENST00000384384 134 ntBASIC0.9□□□□□ -2.27
HOXC4P09017 SNORA20-201ENST00000384662 132 ntBASIC0.9□□□□□ -2.27
HOXC4P09017 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC0.9□□□□□ -2.27
HOXC4P09017 U8.17-201ENST00000391292 132 ntBASIC0.9□□□□□ -2.27
HOXC4P09017 RNU7-197P-201ENST00000458836 62 ntBASIC0.9□□□□□ -2.27
HOXC4P09017 RNU6-830P-201ENST00000516353 107 ntBASIC0.9□□□□□ -2.27
HOXC4P09017 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC0.9□□□□□ -2.27
HOXC4P09017 AL365205.2-201ENST00000594586 68 ntBASIC0.9□□□□□ -2.27
HOXC4P09017 AC211469.2-201ENST00000605461 205 ntBASIC0.9□□□□□ -2.27
HOXC4P09017 RNU1-124P-201ENST00000363861 145 ntBASIC0.89□□□□□ -2.27
HOXC4P09017 Y_RNA.215-201ENST00000364204 112 ntBASIC0.89□□□□□ -2.27
HOXC4P09017 Y_RNA.251-201ENST00000364551 99 ntBASIC0.89□□□□□ -2.27
HOXC4P09017 Y_RNA.497-201ENST00000384447 98 ntBASIC0.89□□□□□ -2.27
HOXC4P09017 SNORD37.2-201ENST00000391075 66 ntBASIC0.89□□□□□ -2.27
HOXC4P09017 snoU13.25-201ENST00000458945 104 ntBASIC0.89□□□□□ -2.27
HOXC4P09017 RPS26P48-201ENST00000491713 339 ntBASIC0.89□□□□□ -2.27
HOXC4P09017 SNORA31.4-201ENST00000516049 129 ntBASIC0.89□□□□□ -2.27
HOXC4P09017 RNU6-126P-201ENST00000516685 103 ntBASIC0.89□□□□□ -2.27
HOXC4P09017 RNU2-60P-201ENST00000517290 128 ntBASIC0.89□□□□□ -2.27
HOXC4P09017 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC0.89□□□□□ -2.27
HOXC4P09017 AC090049.2-201ENST00000550377 109 ntBASIC0.89□□□□□ -2.27
HOXC4P09017 SNORA4-201ENST00000584302 138 ntBASIC0.89□□□□□ -2.27
HOXC4P09017 AC027335.2-201ENST00000624030 375 ntBASIC0.89□□□□□ -2.27
HOXC4P09017 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC0.88□□□□□ -2.27
HOXC4P09017 SNORA25.7-201ENST00000364375 127 ntBASIC0.88□□□□□ -2.27
HOXC4P09017 Y_RNA.242-201ENST00000364473 110 ntBASIC0.88□□□□□ -2.27
HOXC4P09017 Y_RNA.400-201ENST00000383963 111 ntBASIC0.88□□□□□ -2.27
HOXC4P09017 MIR569-201ENST00000385228 96 ntBASIC0.88□□□□□ -2.27
HOXC4P09017 RNU6-460P-201ENST00000391158 108 ntBASIC0.88□□□□□ -2.27
HOXC4P09017 RNU7-41P-201ENST00000515917 61 ntBASIC0.88□□□□□ -2.27
HOXC4P09017 SNORA25.12-201ENST00000516202 82 ntBASIC0.88□□□□□ -2.27
HOXC4P09017 SNORA18.4-201ENST00000516440 124 ntBASIC0.88□□□□□ -2.27
HOXC4P09017 RNU6-426P-201ENST00000516464 97 ntBASIC0.88□□□□□ -2.27
HOXC4P09017 SCARNA15-202ENST00000516881 127 ntBASIC0.88□□□□□ -2.27
HOXC4P09017 SNORA74.3-201ENST00000517108 154 ntBASIC0.88□□□□□ -2.27
HOXC4P09017 IGHVIII-67-2-201ENST00000519849 88 ntBASIC0.88□□□□□ -2.27
HOXC4P09017 AP003484.1-201ENST00000530974 250 ntBASIC0.88□□□□□ -2.27
HOXC4P09017 AC112693.2-201ENST00000556538 232 ntBASIC0.88□□□□□ -2.27
HOXC4P09017 MIR3973-201ENST00000579824 107 ntBASIC0.88□□□□□ -2.27
HOXC4P09017 MIR3192-201ENST00000584920 77 ntBASIC0.88□□□□□ -2.27
HOXC4P09017 AL022345.2-201ENST00000606307 135 ntBASIC0.88□□□□□ -2.27
HOXC4P09017 AL096861.1-201ENST00000610899 123 ntBASIC0.88□□□□□ -2.27
HOXC4P09017 AC012676.2-201ENST00000619258 186 ntBASIC0.88□□□□□ -2.27
HOXC4P09017 AC134878.1-201ENST00000619901 243 ntBASIC0.88□□□□□ -2.27
HOXC4P09017 UGP2-230ENST00000626380 276 ntTSL 5 BASIC0.88□□□□□ -2.27
HOXC4P09017 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC0.88□□□□□ -2.27
HOXC4P09017 Y_RNA.52-201ENST00000362760 96 ntBASIC0.87□□□□□ -2.27
HOXC4P09017 Y_RNA.241-201ENST00000364470 117 ntBASIC0.87□□□□□ -2.27
HOXC4P09017 RNU6-1292P-201ENST00000383856 107 ntBASIC0.87□□□□□ -2.27
HOXC4P09017 Y_RNA.440-201ENST00000384120 114 ntBASIC0.87□□□□□ -2.27
HOXC4P09017 Y_RNA.542-201ENST00000384641 111 ntBASIC0.87□□□□□ -2.27
HOXC4P09017 MIR624-201ENST00000385217 97 ntBASIC0.87□□□□□ -2.27
HOXC4P09017 SNORA75.5-201ENST00000391291 81 ntBASIC0.87□□□□□ -2.27
HOXC4P09017 RNA5SP127-201ENST00000411051 133 ntBASIC0.87□□□□□ -2.27
HOXC4P09017 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.87□□□□□ -2.27
HOXC4P09017 Y_RNA.686-201ENST00000516548 134 ntBASIC0.87□□□□□ -2.27
HOXC4P09017 RNU6-165P-201ENST00000517170 99 ntBASIC0.87□□□□□ -2.27
HOXC4P09017 MIR3646-201ENST00000578301 84 ntBASIC0.87□□□□□ -2.27
HOXC4P09017 MIR4764-201ENST00000580680 88 ntBASIC0.87□□□□□ -2.27
HOXC4P09017 MIR5197-201ENST00000583721 112 ntBASIC0.87□□□□□ -2.27
HOXC4P09017 MIR6788-201ENST00000618842 66 ntBASIC0.87□□□□□ -2.27
HOXC4P09017 AL391516.1-201ENST00000554380 2449 ntBASIC0.87□□□□□ -2.27
HOXC4P09017 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC0.86□□□□□ -2.27
HOXC4P09017 MIR342-201ENST00000362212 99 ntBASIC0.86□□□□□ -2.27
HOXC4P09017 Y_RNA.355-201ENST00000365462 98 ntBASIC0.86□□□□□ -2.27
HOXC4P09017 Y_RNA.370-201ENST00000365589 108 ntBASIC0.86□□□□□ -2.27
HOXC4P09017 RNY1P5-201ENST00000383890 115 ntBASIC0.86□□□□□ -2.27
HOXC4P09017 RNU6-1189P-201ENST00000383958 107 ntBASIC0.86□□□□□ -2.27
HOXC4P09017 RNU6-746P-201ENST00000384112 109 ntBASIC0.86□□□□□ -2.27
HOXC4P09017 AL451046.2-201ENST00000403074 277 ntBASIC0.86□□□□□ -2.27
HOXC4P09017 RPS29P1-201ENST00000465274 159 ntBASIC0.86□□□□□ -2.27
HOXC4P09017 RPL39P28-201ENST00000465655 155 ntBASIC0.86□□□□□ -2.27
HOXC4P09017 RNU2-13P-201ENST00000515909 113 ntBASIC0.86□□□□□ -2.27
HOXC4P09017 RNU6-947P-201ENST00000516264 106 ntBASIC0.86□□□□□ -2.27
HOXC4P09017 RNU6-1149P-201ENST00000516810 97 ntBASIC0.86□□□□□ -2.27
HOXC4P09017 MIR548X2-201ENST00000579776 100 ntBASIC0.86□□□□□ -2.27
HOXC4P09017 AL513534.2-201ENST00000603836 250 ntBASIC0.86□□□□□ -2.27
HOXC4P09017 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC0.86□□□□□ -2.27
HOXC4P09017 Y_RNA.294-201ENST00000364916 102 ntBASIC0.85□□□□□ -2.27
HOXC4P09017 Y_RNA.410-201ENST00000383992 113 ntBASIC0.85□□□□□ -2.27
HOXC4P09017 SNORA27-201ENST00000384323 126 ntBASIC0.85□□□□□ -2.27
HOXC4P09017 Y_RNA.488-201ENST00000384403 102 ntBASIC0.85□□□□□ -2.27
HOXC4P09017 MIR520C-201ENST00000385005 87 ntBASIC0.85□□□□□ -2.27
HOXC4P09017 SNORA40.5-201ENST00000391061 128 ntBASIC0.85□□□□□ -2.27
HOXC4P09017 MIR548M-201ENST00000408260 86 ntBASIC0.85□□□□□ -2.27
HOXC4P09017 AC087499.4-201ENST00000448505 178 ntBASIC0.85□□□□□ -2.27
HOXC4P09017 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC0.85□□□□□ -2.27
HOXC4P09017 RNU7-45P-201ENST00000459460 63 ntBASIC0.85□□□□□ -2.27
HOXC4P09017 UBL5P1-201ENST00000507979 193 ntBASIC0.85□□□□□ -2.27
HOXC4P09017 RNA5SP236-201ENST00000516169 116 ntBASIC0.85□□□□□ -2.27
HOXC4P09017 RNA5SP220-201ENST00000516298 104 ntBASIC0.85□□□□□ -2.27
HOXC4P09017 Y_RNA.703-201ENST00000516846 111 ntBASIC0.85□□□□□ -2.27
HOXC4P09017 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC0.85□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 185.6 ms