Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 RNU6-592P-201ENST00000411333 103 ntBASIC-2.59□□□□□ -2.82
CCDC88BA6NC98 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC-2.59□□□□□ -2.82
CCDC88BA6NC98 RNU7-195P-201ENST00000458793 62 ntBASIC-2.59□□□□□ -2.82
CCDC88BA6NC98 Y_RNA.809-201ENST00000516058 95 ntBASIC-2.59□□□□□ -2.82
CCDC88BA6NC98 Y_RNA.665-201ENST00000516177 98 ntBASIC-2.59□□□□□ -2.82
CCDC88BA6NC98 Z84480.1-201ENST00000605131 311 ntBASIC-2.59□□□□□ -2.82
CCDC88BA6NC98 AC027449.1-201ENST00000608890 407 ntBASIC-2.59□□□□□ -2.82
CCDC88BA6NC98 MIR376A2-201ENST00000636782 80 ntBASIC-2.59□□□□□ -2.82
CCDC88BA6NC98 RNA5SP26-201ENST00000362406 119 ntBASIC-2.6□□□□□ -2.83
CCDC88BA6NC98 Y_RNA.250-201ENST00000364542 110 ntBASIC-2.6□□□□□ -2.83
CCDC88BA6NC98 SNORA62.4-201ENST00000365504 151 ntBASIC-2.6□□□□□ -2.83
CCDC88BA6NC98 RNU6-746P-201ENST00000384112 109 ntBASIC-2.6□□□□□ -2.83
CCDC88BA6NC98 RNU6-74P-201ENST00000384235 107 ntBASIC-2.6□□□□□ -2.83
CCDC88BA6NC98 RNU6-1114P-201ENST00000516022 107 ntBASIC-2.6□□□□□ -2.83
CCDC88BA6NC98 RNU6-693P-201ENST00000516134 107 ntBASIC-2.6□□□□□ -2.83
CCDC88BA6NC98 MIR4500-201ENST00000579472 76 ntBASIC-2.6□□□□□ -2.83
CCDC88BA6NC98 MIR664B-201ENST00000626756 61 ntBASIC-2.6□□□□□ -2.83
CCDC88BA6NC98 Y_RNA.328-201ENST00000365208 113 ntBASIC-2.61□□□□□ -2.83
CCDC88BA6NC98 Y_RNA.608-201ENST00000410647 95 ntBASIC-2.61□□□□□ -2.83
CCDC88BA6NC98 RNU2-61P-201ENST00000411069 191 ntBASIC-2.61□□□□□ -2.83
CCDC88BA6NC98 MIR2113-201ENST00000459007 91 ntBASIC-2.61□□□□□ -2.83
CCDC88BA6NC98 MTND3P7-201ENST00000474435 343 ntBASIC-2.61□□□□□ -2.83
CCDC88BA6NC98 AC097510.1-201ENST00000510945 133 ntBASIC-2.61□□□□□ -2.83
CCDC88BA6NC98 SNORD63.1-201ENST00000516178 80 ntBASIC-2.61□□□□□ -2.83
CCDC88BA6NC98 RNU6-790P-201ENST00000384479 105 ntBASIC-2.62□□□□□ -2.83
CCDC88BA6NC98 MIR507-201ENST00000385234 94 ntBASIC-2.62□□□□□ -2.83
CCDC88BA6NC98 MTCYBP8-201ENST00000422855 651 ntBASIC-2.62□□□□□ -2.83
CCDC88BA6NC98 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC-2.62□□□□□ -2.83
CCDC88BA6NC98 MTATP6P13-201ENST00000438531 667 ntBASIC-2.62□□□□□ -2.83
CCDC88BA6NC98 UBE2V1P12-201ENST00000503954 474 ntBASIC-2.62□□□□□ -2.83
CCDC88BA6NC98 AC093730.1-201ENST00000508825 448 ntTSL 3 BASIC-2.62□□□□□ -2.83
CCDC88BA6NC98 Y_RNA.672-201ENST00000516289 104 ntBASIC-2.62□□□□□ -2.83
CCDC88BA6NC98 AL008718.3-201ENST00000610217 321 ntBASIC-2.62□□□□□ -2.83
CCDC88BA6NC98 SNORD115-33-201ENST00000363723 82 ntBASIC-2.63□□□□□ -2.83
CCDC88BA6NC98 SNORA51.5-201ENST00000384126 131 ntBASIC-2.63□□□□□ -2.83
CCDC88BA6NC98 MIR487B-201ENST00000385021 84 ntBASIC-2.63□□□□□ -2.83
CCDC88BA6NC98 MTND3P23-201ENST00000431980 347 ntBASIC-2.63□□□□□ -2.83
CCDC88BA6NC98 AC104850.1-201ENST00000435940 476 ntBASIC-2.63□□□□□ -2.83
CCDC88BA6NC98 RNU6-208P-201ENST00000362431 107 ntBASIC-2.64□□□□□ -2.83
CCDC88BA6NC98 RNU6-1260P-201ENST00000362944 107 ntBASIC-2.64□□□□□ -2.83
CCDC88BA6NC98 USP9YP23-201ENST00000455085 407 ntBASIC-2.64□□□□□ -2.83
CCDC88BA6NC98 MTCO2P30-201ENST00000503662 364 ntBASIC-2.64□□□□□ -2.83
CCDC88BA6NC98 AL358937.1-201ENST00000524512 336 ntTSL 2 BASIC-2.64□□□□□ -2.83
CCDC88BA6NC98 AC007012.1-201ENST00000567192 175 ntBASIC-2.64□□□□□ -2.83
CCDC88BA6NC98 AC145350.1-201ENST00000567426 208 ntBASIC-2.64□□□□□ -2.83
CCDC88BA6NC98 RNY1P11-201ENST00000363759 113 ntBASIC-2.65□□□□□ -2.83
CCDC88BA6NC98 Y_RNA.215-201ENST00000364204 112 ntBASIC-2.65□□□□□ -2.83
CCDC88BA6NC98 Y_RNA.284-201ENST00000364806 102 ntBASIC-2.65□□□□□ -2.83
CCDC88BA6NC98 Y_RNA.351-201ENST00000365436 96 ntBASIC-2.65□□□□□ -2.83
CCDC88BA6NC98 Y_RNA.405-201ENST00000383979 100 ntBASIC-2.65□□□□□ -2.83
CCDC88BA6NC98 Y_RNA.451-201ENST00000384200 100 ntBASIC-2.65□□□□□ -2.83
CCDC88BA6NC98 Y_RNA.524-201ENST00000384564 100 ntBASIC-2.65□□□□□ -2.83
CCDC88BA6NC98 Y_RNA.561-201ENST00000384694 100 ntBASIC-2.65□□□□□ -2.83
CCDC88BA6NC98 AC060788.1-201ENST00000521318 469 ntBASIC-2.65□□□□□ -2.83
CCDC88BA6NC98 AC006566.1-201ENST00000608943 513 ntBASIC-2.65□□□□□ -2.83
CCDC88BA6NC98 CR2-207ENST00000640301 151 ntTSL 1 (best) BASIC-2.65□□□□□ -2.83
CCDC88BA6NC98 SNORD115-19-201ENST00000363098 82 ntBASIC-2.65□□□□□ -2.83
CCDC88BA6NC98 SNORD115-18-201ENST00000363293 82 ntBASIC-2.65□□□□□ -2.83
CCDC88BA6NC98 SNORD115-17-201ENST00000364612 82 ntBASIC-2.65□□□□□ -2.83
CCDC88BA6NC98 SNORD115-20-201ENST00000365099 82 ntBASIC-2.65□□□□□ -2.83
CCDC88BA6NC98 Y_RNA.366-201ENST00000365540 102 ntBASIC-2.65□□□□□ -2.83
CCDC88BA6NC98 GPR143P-201ENST00000434155 205 ntBASIC-2.65□□□□□ -2.83
CCDC88BA6NC98 RNU6-118P-201ENST00000516552 102 ntBASIC-2.65□□□□□ -2.83
CCDC88BA6NC98 RNU6-980P-201ENST00000516925 103 ntBASIC-2.65□□□□□ -2.83
CCDC88BA6NC98 MIR4756-201ENST00000577874 78 ntBASIC-2.65□□□□□ -2.83
CCDC88BA6NC98 AP003357.1-201ENST00000604497 148 ntBASIC-2.65□□□□□ -2.83
CCDC88BA6NC98 AL357078.3-201ENST00000607528 618 ntBASIC-2.65□□□□□ -2.83
CCDC88BA6NC98 AL669831.3-213ENST00000636676 183 ntBASIC-2.65□□□□□ -2.83
CCDC88BA6NC98 RNU6-214P-201ENST00000384130 107 ntBASIC-2.66□□□□□ -2.84
CCDC88BA6NC98 CYCSP46-201ENST00000423569 204 ntBASIC-2.66□□□□□ -2.84
CCDC88BA6NC98 SNORD54-201ENST00000459159 67 ntBASIC-2.66□□□□□ -2.84
CCDC88BA6NC98 XIRP2-AS1-201ENST00000525330 776 ntTSL 3 BASIC-2.66□□□□□ -2.84
CCDC88BA6NC98 AC104010.1-201ENST00000616889 150 ntBASIC-2.66□□□□□ -2.84
CCDC88BA6NC98 AC009878.1-201ENST00000621819 340 ntBASIC-2.66□□□□□ -2.84
CCDC88BA6NC98 RNU4-50P-201ENST00000364361 141 ntBASIC-2.67□□□□□ -2.84
CCDC88BA6NC98 SNORA20-201ENST00000384662 132 ntBASIC-2.67□□□□□ -2.84
CCDC88BA6NC98 Y_RNA.577-201ENST00000384794 101 ntBASIC-2.67□□□□□ -2.84
CCDC88BA6NC98 Y_RNA.601-201ENST00000410500 113 ntBASIC-2.67□□□□□ -2.84
CCDC88BA6NC98 MTND3P21-201ENST00000433774 331 ntBASIC-2.67□□□□□ -2.84
CCDC88BA6NC98 AC009961.2-201ENST00000435771 251 ntBASIC-2.67□□□□□ -2.84
CCDC88BA6NC98 SNORD11-201ENST00000459124 84 ntBASIC-2.67□□□□□ -2.84
CCDC88BA6NC98 Vault.3-201ENST00000516676 95 ntBASIC-2.67□□□□□ -2.84
CCDC88BA6NC98 MIR5583-1-201ENST00000580941 59 ntBASIC-2.67□□□□□ -2.84
CCDC88BA6NC98 AC103705.1-201ENST00000619013 241 ntBASIC-2.67□□□□□ -2.84
CCDC88BA6NC98 Y_RNA.436-201ENST00000384097 102 ntBASIC-2.68□□□□□ -2.84
CCDC88BA6NC98 Y_RNA.472-201ENST00000384322 102 ntBASIC-2.68□□□□□ -2.84
CCDC88BA6NC98 SNORA26.4-201ENST00000391188 123 ntBASIC-2.68□□□□□ -2.84
CCDC88BA6NC98 SNORD27.1-201ENST00000516319 72 ntBASIC-2.68□□□□□ -2.84
CCDC88BA6NC98 MIR4308-201ENST00000580634 81 ntBASIC-2.68□□□□□ -2.84
CCDC88BA6NC98 MIR6773-201ENST00000612812 74 ntBASIC-2.68□□□□□ -2.84
CCDC88BA6NC98 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC-2.68□□□□□ -2.84
CCDC88BA6NC98 RNU6-553P-201ENST00000364047 96 ntBASIC-2.69□□□□□ -2.84
CCDC88BA6NC98 Y_RNA.341-201ENST00000365341 102 ntBASIC-2.69□□□□□ -2.84
CCDC88BA6NC98 SNORD116-9-201ENST00000384000 95 ntBASIC-2.69□□□□□ -2.84
CCDC88BA6NC98 SNORD116-3-201ENST00000384287 95 ntBASIC-2.69□□□□□ -2.84
CCDC88BA6NC98 SNORD116-8-201ENST00000384365 95 ntBASIC-2.69□□□□□ -2.84
CCDC88BA6NC98 SNORD116-7-201ENST00000384404 95 ntBASIC-2.69□□□□□ -2.84
CCDC88BA6NC98 SNORD116-5-201ENST00000384462 95 ntBASIC-2.69□□□□□ -2.84
CCDC88BA6NC98 SNORD116-12-201ENST00000384468 92 ntBASIC-2.69□□□□□ -2.84
CCDC88BA6NC98 LINC01984-201ENST00000583863 301 ntTSL 3 BASIC-2.69□□□□□ -2.84
Retrieved 100 of 98,524 protein–RNA pairs in 207.7 ms