Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC2.7□□□□□ -1.98
CCDC39Q9UFE4 RNU6ATAC9P-201ENST00000516210 116 ntBASIC2.7□□□□□ -1.98
CCDC39Q9UFE4 RNU6-1258P-201ENST00000516911 111 ntBASIC2.7□□□□□ -1.98
CCDC39Q9UFE4 AC024995.1-201ENST00000523014 93 ntBASIC2.7□□□□□ -1.98
CCDC39Q9UFE4 MIR548BB-201ENST00000626714 66 ntBASIC2.7□□□□□ -1.98
CCDC39Q9UFE4 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
CCDC39Q9UFE4 AC016717.2-201ENST00000609089 5141 ntBASIC2.69□□□□□ -1.98
CCDC39Q9UFE4 Y_RNA.191-201ENST00000363972 113 ntBASIC2.69□□□□□ -1.98
CCDC39Q9UFE4 SNORD114-6-201ENST00000364393 72 ntBASIC2.69□□□□□ -1.98
CCDC39Q9UFE4 MIR515-2-201ENST00000384883 83 ntBASIC2.69□□□□□ -1.98
CCDC39Q9UFE4 MIR515-1-201ENST00000384884 83 ntBASIC2.69□□□□□ -1.98
CCDC39Q9UFE4 RNA5SP482-201ENST00000391269 118 ntBASIC2.69□□□□□ -1.98
CCDC39Q9UFE4 ATP5J2P3-201ENST00000451550 258 ntBASIC2.69□□□□□ -1.98
CCDC39Q9UFE4 RNU7-113P-201ENST00000459273 62 ntBASIC2.69□□□□□ -1.98
CCDC39Q9UFE4 AC067747.1-201ENST00000608026 250 ntBASIC2.69□□□□□ -1.98
CCDC39Q9UFE4 MIR1291-201ENST00000627649 87 ntBASIC2.69□□□□□ -1.98
CCDC39Q9UFE4 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC2.69□□□□□ -1.98
CCDC39Q9UFE4 SNORD115-2-201ENST00000362842 82 ntBASIC2.68□□□□□ -1.98
CCDC39Q9UFE4 RNU1-91P-201ENST00000364746 163 ntBASIC2.68□□□□□ -1.98
CCDC39Q9UFE4 SNORD115-20-201ENST00000365099 82 ntBASIC2.68□□□□□ -1.98
CCDC39Q9UFE4 U8.15-201ENST00000390947 134 ntBASIC2.68□□□□□ -1.98
CCDC39Q9UFE4 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC2.68□□□□□ -1.98
CCDC39Q9UFE4 RNU7-45P-201ENST00000459460 63 ntBASIC2.68□□□□□ -1.98
CCDC39Q9UFE4 AC026436.1-201ENST00000510537 270 ntBASIC2.68□□□□□ -1.98
CCDC39Q9UFE4 RNA5SP24-201ENST00000516478 95 ntBASIC2.68□□□□□ -1.98
CCDC39Q9UFE4 MIR4439-201ENST00000583746 80 ntBASIC2.68□□□□□ -1.98
CCDC39Q9UFE4 AC096720.1-201ENST00000604441 183 ntBASIC2.68□□□□□ -1.98
CCDC39Q9UFE4 SNORD115-34-201ENST00000362441 82 ntBASIC2.67□□□□□ -1.98
CCDC39Q9UFE4 SNORD115-12-201ENST00000362583 82 ntBASIC2.67□□□□□ -1.98
CCDC39Q9UFE4 RNU6-1313P-201ENST00000362622 102 ntBASIC2.67□□□□□ -1.98
CCDC39Q9UFE4 SNORD115-29-201ENST00000362834 82 ntBASIC2.67□□□□□ -1.98
CCDC39Q9UFE4 SNORD115-9-201ENST00000362912 82 ntBASIC2.67□□□□□ -1.98
CCDC39Q9UFE4 SNORD115-21-201ENST00000362963 81 ntBASIC2.67□□□□□ -1.98
CCDC39Q9UFE4 SNORD115-14-201ENST00000363090 81 ntBASIC2.67□□□□□ -1.98
CCDC39Q9UFE4 RNU6-509P-201ENST00000363519 107 ntBASIC2.67□□□□□ -1.98
CCDC39Q9UFE4 SNORD115-41-201ENST00000363608 82 ntBASIC2.67□□□□□ -1.98
CCDC39Q9UFE4 SNORD115-11-201ENST00000363616 82 ntBASIC2.67□□□□□ -1.98
CCDC39Q9UFE4 SNORD115-5-201ENST00000363633 82 ntBASIC2.67□□□□□ -1.98
CCDC39Q9UFE4 SNORD115-39-201ENST00000363694 82 ntBASIC2.67□□□□□ -1.98
CCDC39Q9UFE4 SNORD115-4-201ENST00000363810 82 ntBASIC2.67□□□□□ -1.98
CCDC39Q9UFE4 SNORD115-6-201ENST00000363942 82 ntBASIC2.67□□□□□ -1.98
CCDC39Q9UFE4 SNORD115-42-201ENST00000364273 82 ntBASIC2.67□□□□□ -1.98
CCDC39Q9UFE4 SNORD115-15-201ENST00000364809 81 ntBASIC2.67□□□□□ -1.98
CCDC39Q9UFE4 SNORD115-26-201ENST00000365067 82 ntBASIC2.67□□□□□ -1.98
CCDC39Q9UFE4 SNORD115-10-201ENST00000365073 81 ntBASIC2.67□□□□□ -1.98
CCDC39Q9UFE4 SNORD115-43-201ENST00000365503 82 ntBASIC2.67□□□□□ -1.98
CCDC39Q9UFE4 SNORD115-36-201ENST00000365629 82 ntBASIC2.67□□□□□ -1.98
CCDC39Q9UFE4 RNU1-52P-201ENST00000384190 164 ntBASIC2.67□□□□□ -1.98
CCDC39Q9UFE4 SNORD77B-201ENST00000391112 67 ntBASIC2.67□□□□□ -1.98
CCDC39Q9UFE4 Y_RNA.607-201ENST00000410597 98 ntBASIC2.67□□□□□ -1.98
CCDC39Q9UFE4 SRIP3-201ENST00000413200 219 ntBASIC2.67□□□□□ -1.98
CCDC39Q9UFE4 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC2.67□□□□□ -1.98
CCDC39Q9UFE4 AC069257.2-201ENST00000441819 155 ntBASIC2.67□□□□□ -1.98
CCDC39Q9UFE4 AC114811.1-201ENST00000507207 168 ntBASIC2.67□□□□□ -1.98
CCDC39Q9UFE4 AC090821.2-201ENST00000523552 176 ntBASIC2.67□□□□□ -1.98
CCDC39Q9UFE4 MIR548AE2-201ENST00000583456 67 ntBASIC2.67□□□□□ -1.98
CCDC39Q9UFE4 AL512310.12-203ENST00000640543 90 ntBASIC2.67□□□□□ -1.98
CCDC39Q9UFE4 AP006437.1-201ENST00000641440 3685 ntBASIC2.67□□□□□ -1.98
CCDC39Q9UFE4 RNU6-525P-201ENST00000363685 104 ntBASIC2.66□□□□□ -1.98
CCDC39Q9UFE4 SNORA1.1-201ENST00000364671 133 ntBASIC2.66□□□□□ -1.98
CCDC39Q9UFE4 RNA5SP37-201ENST00000365420 130 ntBASIC2.66□□□□□ -1.98
CCDC39Q9UFE4 Y_RNA.430-201ENST00000384081 110 ntBASIC2.66□□□□□ -1.98
CCDC39Q9UFE4 RNU6-301P-201ENST00000384277 107 ntBASIC2.66□□□□□ -1.98
CCDC39Q9UFE4 Y_RNA.470-201ENST00000384307 117 ntBASIC2.66□□□□□ -1.98
CCDC39Q9UFE4 MIR889-201ENST00000401280 79 ntBASIC2.66□□□□□ -1.98
CCDC39Q9UFE4 CST2P1-201ENST00000425770 87 ntBASIC2.66□□□□□ -1.98
CCDC39Q9UFE4 AL606517.2-201ENST00000442855 241 ntBASIC2.66□□□□□ -1.98
CCDC39Q9UFE4 AC090255.1-201ENST00000495779 349 ntBASIC2.66□□□□□ -1.98
CCDC39Q9UFE4 RN7SL636P-201ENST00000497504 294 ntBASIC2.66□□□□□ -1.98
CCDC39Q9UFE4 RNU6-667P-201ENST00000517186 102 ntBASIC2.66□□□□□ -1.98
CCDC39Q9UFE4 AC121758.2-201ENST00000553271 193 ntBASIC2.66□□□□□ -1.98
CCDC39Q9UFE4 MIR3126-201ENST00000577443 74 ntBASIC2.66□□□□□ -1.98
CCDC39Q9UFE4 AC006023.1-201ENST00000603944 259 ntBASIC2.66□□□□□ -1.98
CCDC39Q9UFE4 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC2.65□□□□□ -1.99
CCDC39Q9UFE4 SNORA25B-201ENST00000365507 128 ntBASIC2.65□□□□□ -1.99
CCDC39Q9UFE4 RNU6-1319P-201ENST00000390855 104 ntBASIC2.65□□□□□ -1.99
CCDC39Q9UFE4 RNU6-747P-201ENST00000390928 104 ntBASIC2.65□□□□□ -1.99
CCDC39Q9UFE4 RNU6-241P-201ENST00000391148 104 ntBASIC2.65□□□□□ -1.99
CCDC39Q9UFE4 RNU6-177P-201ENST00000411257 104 ntBASIC2.65□□□□□ -1.99
CCDC39Q9UFE4 AC245047.3-201ENST00000429428 127 ntBASIC2.65□□□□□ -1.99
CCDC39Q9UFE4 KRTAP19-11P-201ENST00000439851 104 ntBASIC2.65□□□□□ -1.99
CCDC39Q9UFE4 AL049873.1-201ENST00000480540 376 ntBASIC2.65□□□□□ -1.99
CCDC39Q9UFE4 AC108729.3-201ENST00000513484 108 ntBASIC2.65□□□□□ -1.99
CCDC39Q9UFE4 RNA5SP33-201ENST00000516687 98 ntBASIC2.65□□□□□ -1.99
CCDC39Q9UFE4 RNU7-28P-201ENST00000516759 62 ntBASIC2.65□□□□□ -1.99
CCDC39Q9UFE4 RNU6-1116P-201ENST00000517269 99 ntBASIC2.65□□□□□ -1.99
CCDC39Q9UFE4 AC103810.6-201ENST00000606708 136 ntBASIC2.65□□□□□ -1.99
CCDC39Q9UFE4 MIR376B-201ENST00000614515 100 ntBASIC2.65□□□□□ -1.99
CCDC39Q9UFE4 AP000553.5-201ENST00000641933 54 ntBASIC2.65□□□□□ -1.99
CCDC39Q9UFE4 AL442644.1-201ENST00000454390 3105 ntBASIC2.64□□□□□ -1.99
CCDC39Q9UFE4 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
CCDC39Q9UFE4 RNU6-862P-201ENST00000362804 105 ntBASIC2.64□□□□□ -1.99
CCDC39Q9UFE4 Y_RNA.94-201ENST00000363068 106 ntBASIC2.64□□□□□ -1.99
CCDC39Q9UFE4 Y_RNA.316-201ENST00000365118 111 ntBASIC2.64□□□□□ -1.99
CCDC39Q9UFE4 AC018868.1-201ENST00000491307 315 ntBASIC2.64□□□□□ -1.99
CCDC39Q9UFE4 AC234781.5-201ENST00000508429 271 ntBASIC2.64□□□□□ -1.99
CCDC39Q9UFE4 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC2.64□□□□□ -1.99
CCDC39Q9UFE4 MIR3162-201ENST00000581818 82 ntBASIC2.64□□□□□ -1.99
CCDC39Q9UFE4 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC2.64□□□□□ -1.99
CCDC39Q9UFE4 AC131280.1-202ENST00000624067 4211 ntBASIC2.63□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 278.7 ms