Protein–RNA interactions for Protein: P61968

LMO4, LIM domain transcription factor LMO4, humanhuman

Predictions only

Length 165 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4P61968 RNU6-834P-201ENST00000362367 110 ntBASIC1.31□□□□□ -2.2
LMO4P61968 RNU1-42P-201ENST00000364033 160 ntBASIC1.31□□□□□ -2.2
LMO4P61968 RNU6-647P-201ENST00000364243 107 ntBASIC1.31□□□□□ -2.2
LMO4P61968 RNU6-1325P-201ENST00000364905 105 ntBASIC1.31□□□□□ -2.2
LMO4P61968 Y_RNA.336-201ENST00000365307 109 ntBASIC1.31□□□□□ -2.2
LMO4P61968 RNU6-1056P-201ENST00000383996 107 ntBASIC1.31□□□□□ -2.2
LMO4P61968 RNU6-429P-201ENST00000384582 108 ntBASIC1.31□□□□□ -2.2
LMO4P61968 RNU6ATAC3P-201ENST00000387974 126 ntBASIC1.31□□□□□ -2.2
LMO4P61968 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC1.31□□□□□ -2.2
LMO4P61968 RNU6-1064P-201ENST00000410626 104 ntBASIC1.31□□□□□ -2.2
LMO4P61968 Y_RNA.617-201ENST00000410920 90 ntBASIC1.31□□□□□ -2.2
LMO4P61968 RPL31P63-201ENST00000422565 375 ntBASIC1.31□□□□□ -2.2
LMO4P61968 CALM2P4-201ENST00000430810 426 ntBASIC1.31□□□□□ -2.2
LMO4P61968 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC1.31□□□□□ -2.2
LMO4P61968 MTATP6P21-201ENST00000440681 189 ntBASIC1.31□□□□□ -2.2
LMO4P61968 HMGN2P32-201ENST00000444648 269 ntBASIC1.31□□□□□ -2.2
LMO4P61968 RNU7-95P-201ENST00000459222 64 ntBASIC1.31□□□□□ -2.2
LMO4P61968 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC1.31□□□□□ -2.2
LMO4P61968 SNORD33.1-201ENST00000516213 88 ntBASIC1.31□□□□□ -2.2
LMO4P61968 AC133485.4-201ENST00000561835 220 ntBASIC1.31□□□□□ -2.2
LMO4P61968 AC138907.4-201ENST00000570107 226 ntBASIC1.31□□□□□ -2.2
LMO4P61968 AC108081.1-201ENST00000604358 221 ntBASIC1.31□□□□□ -2.2
LMO4P61968 SNORA28-201ENST00000606769 126 ntBASIC1.31□□□□□ -2.2
LMO4P61968 AL512598.1-201ENST00000610158 273 ntBASIC1.31□□□□□ -2.2
LMO4P61968 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC1.31□□□□□ -2.2
LMO4P61968 SNORD115-28-201ENST00000363931 81 ntBASIC1.3□□□□□ -2.2
LMO4P61968 SNORD58C-201ENST00000365223 64 ntBASIC1.3□□□□□ -2.2
LMO4P61968 RNU6-44P-201ENST00000384045 107 ntBASIC1.3□□□□□ -2.2
LMO4P61968 RNU6-476P-201ENST00000384726 107 ntBASIC1.3□□□□□ -2.2
LMO4P61968 U8.16-201ENST00000391279 133 ntBASIC1.3□□□□□ -2.2
LMO4P61968 RNU6-938P-201ENST00000411285 103 ntBASIC1.3□□□□□ -2.2
LMO4P61968 AL035461.1-201ENST00000421490 332 ntBASIC1.3□□□□□ -2.2
LMO4P61968 snoU13.9-201ENST00000458927 103 ntBASIC1.3□□□□□ -2.2
LMO4P61968 CYCTP-201ENST00000504253 315 ntBASIC1.3□□□□□ -2.2
LMO4P61968 Y_RNA.676-201ENST00000516393 96 ntBASIC1.3□□□□□ -2.2
LMO4P61968 RNU6-919P-201ENST00000516731 104 ntBASIC1.3□□□□□ -2.2
LMO4P61968 SNORD36C-201ENST00000516733 66 ntBASIC1.3□□□□□ -2.2
LMO4P61968 IGKV1-22-201ENST00000524313 326 ntBASIC1.3□□□□□ -2.2
LMO4P61968 MIR6129-201ENST00000616087 109 ntBASIC1.3□□□□□ -2.2
LMO4P61968 AC134878.1-201ENST00000619901 243 ntBASIC1.3□□□□□ -2.2
LMO4P61968 AC015726.2-201ENST00000620112 122 ntBASIC1.3□□□□□ -2.2
LMO4P61968 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC1.3□□□□□ -2.2
LMO4P61968 ICE2P2-201ENST00000483823 2787 ntBASIC1.3□□□□□ -2.2
LMO4P61968 Y_RNA.37-201ENST00000362606 108 ntBASIC1.29□□□□□ -2.2
LMO4P61968 Y_RNA.164-201ENST00000363709 102 ntBASIC1.29□□□□□ -2.2
LMO4P61968 RNU6-1189P-201ENST00000383958 107 ntBASIC1.29□□□□□ -2.2
LMO4P61968 Y_RNA.410-201ENST00000383992 113 ntBASIC1.29□□□□□ -2.2
LMO4P61968 RNU6-1144P-201ENST00000384247 104 ntBASIC1.29□□□□□ -2.2
LMO4P61968 RNU6-424P-201ENST00000384367 105 ntBASIC1.29□□□□□ -2.2
LMO4P61968 RNU6-163P-201ENST00000384396 106 ntBASIC1.29□□□□□ -2.2
LMO4P61968 MIR517C-201ENST00000385103 95 ntBASIC1.29□□□□□ -2.2
LMO4P61968 MIRLET7F2-201ENST00000385277 83 ntBASIC1.29□□□□□ -2.2
LMO4P61968 RNU6-360P-201ENST00000390944 104 ntBASIC1.29□□□□□ -2.2
LMO4P61968 RN7SKP200-201ENST00000410564 320 ntBASIC1.29□□□□□ -2.2
LMO4P61968 MTND5P34-201ENST00000568888 325 ntBASIC1.29□□□□□ -2.2
LMO4P61968 MIR4285-201ENST00000581001 85 ntBASIC1.29□□□□□ -2.2
LMO4P61968 BX248123.2-201ENST00000606318 124 ntBASIC1.29□□□□□ -2.2
LMO4P61968 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC1.29□□□□□ -2.2
LMO4P61968 AC027279.3-201ENST00000625055 122 ntBASIC1.29□□□□□ -2.2
LMO4P61968 U6.95-201ENST00000636931 70 ntBASIC1.29□□□□□ -2.2
LMO4P61968 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.29□□□□□ -2.2
LMO4P61968 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.28□□□□□ -2.2
LMO4P61968 RNU6-1031P-201ENST00000384773 107 ntBASIC1.28□□□□□ -2.2
LMO4P61968 SNORA67.6-201ENST00000391093 99 ntBASIC1.28□□□□□ -2.2
LMO4P61968 AL034345.1-201ENST00000407768 123 ntBASIC1.28□□□□□ -2.2
LMO4P61968 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC1.28□□□□□ -2.2
LMO4P61968 AC005908.1-201ENST00000468701 347 ntBASIC1.28□□□□□ -2.2
LMO4P61968 RN7SKP19-201ENST00000516016 252 ntBASIC1.28□□□□□ -2.2
LMO4P61968 RNA5SP168-201ENST00000516642 112 ntBASIC1.28□□□□□ -2.2
LMO4P61968 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC1.28□□□□□ -2.2
LMO4P61968 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.27□□□□□ -2.21
LMO4P61968 SNORA2.2-201ENST00000365473 135 ntBASIC1.27□□□□□ -2.21
LMO4P61968 Y_RNA.440-201ENST00000384120 114 ntBASIC1.27□□□□□ -2.21
LMO4P61968 SNORD38C-201ENST00000384381 69 ntBASIC1.27□□□□□ -2.21
LMO4P61968 RNU6-950P-201ENST00000384651 107 ntBASIC1.27□□□□□ -2.21
LMO4P61968 MIR1323-201ENST00000408090 73 ntBASIC1.27□□□□□ -2.21
LMO4P61968 RNU6-321P-201ENST00000410912 106 ntBASIC1.27□□□□□ -2.21
LMO4P61968 JTBP1-201ENST00000441314 247 ntBASIC1.27□□□□□ -2.21
LMO4P61968 HSPE1P24-201ENST00000450782 238 ntBASIC1.27□□□□□ -2.21
LMO4P61968 snoU13.27-201ENST00000459278 104 ntBASIC1.27□□□□□ -2.21
LMO4P61968 RNU7-34P-201ENST00000459394 64 ntBASIC1.27□□□□□ -2.21
LMO4P61968 AC099513.1-201ENST00000490423 301 ntBASIC1.27□□□□□ -2.21
LMO4P61968 AP003484.1-201ENST00000530974 250 ntBASIC1.27□□□□□ -2.21
LMO4P61968 AC012493.3-201ENST00000604494 112 ntBASIC1.27□□□□□ -2.21
LMO4P61968 AL359821.1-201ENST00000605519 182 ntBASIC1.27□□□□□ -2.21
LMO4P61968 AL391516.1-201ENST00000554380 2449 ntBASIC1.27□□□□□ -2.21
LMO4P61968 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC1.26□□□□□ -2.21
LMO4P61968 RNU6-833P-201ENST00000363486 107 ntBASIC1.26□□□□□ -2.21
LMO4P61968 Y_RNA.366-201ENST00000365540 102 ntBASIC1.26□□□□□ -2.21
LMO4P61968 RNY4P18-201ENST00000391107 89 ntBASIC1.26□□□□□ -2.21
LMO4P61968 RNU6-113P-201ENST00000516653 101 ntBASIC1.26□□□□□ -2.21
LMO4P61968 MIR4709-201ENST00000577272 72 ntBASIC1.26□□□□□ -2.21
LMO4P61968 MIR4422-201ENST00000581938 83 ntBASIC1.26□□□□□ -2.21
LMO4P61968 MIR4781-201ENST00000585250 76 ntBASIC1.26□□□□□ -2.21
LMO4P61968 AL670379.3-201ENST00000605040 251 ntBASIC1.26□□□□□ -2.21
LMO4P61968 AC021506.2-201ENST00000612354 169 ntBASIC1.26□□□□□ -2.21
LMO4P61968 AC025166.1-201ENST00000612411 163 ntBASIC1.26□□□□□ -2.21
LMO4P61968 MIR8063-201ENST00000621930 81 ntBASIC1.26□□□□□ -2.21
LMO4P61968 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.26□□□□□ -2.21
LMO4P61968 SNORA63.4-201ENST00000362763 126 ntBASIC1.25□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 173.4 ms