Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 MTND5P20-201ENST00000448677 143 ntBASIC0.3□□□□□ -2.36
MSH6P52701 Y_RNA.715-201ENST00000517082 110 ntBASIC0.3□□□□□ -2.36
MSH6P52701 MIR5692C2-201ENST00000577959 77 ntBASIC0.3□□□□□ -2.36
MSH6P52701 MIR376A1-201ENST00000616574 68 ntBASIC0.3□□□□□ -2.36
MSH6P52701 AC134878.1-201ENST00000619901 243 ntBASIC0.3□□□□□ -2.36
MSH6P52701 SNORD38B-202ENST00000625943 69 ntBASIC0.3□□□□□ -2.36
MSH6P52701 RNU4-90P-201ENST00000362773 141 ntBASIC0.29□□□□□ -2.36
MSH6P52701 SNORD115-28-201ENST00000363931 81 ntBASIC0.29□□□□□ -2.36
MSH6P52701 SNORD114-15-201ENST00000364687 72 ntBASIC0.29□□□□□ -2.36
MSH6P52701 Y_RNA.486-201ENST00000384398 107 ntBASIC0.29□□□□□ -2.36
MSH6P52701 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC0.29□□□□□ -2.36
MSH6P52701 Y_RNA.587-201ENST00000391210 103 ntBASIC0.29□□□□□ -2.36
MSH6P52701 Y_RNA.602-201ENST00000410535 92 ntBASIC0.29□□□□□ -2.36
MSH6P52701 RNU6-938P-201ENST00000411285 103 ntBASIC0.29□□□□□ -2.36
MSH6P52701 BTF3P11-201ENST00000426582 477 ntBASIC0.29□□□□□ -2.36
MSH6P52701 MTND4P19-201ENST00000446659 478 ntBASIC0.29□□□□□ -2.36
MSH6P52701 MIR18B-201ENST00000454574 71 ntBASIC0.29□□□□□ -2.36
MSH6P52701 RNU7-62P-201ENST00000458856 62 ntBASIC0.29□□□□□ -2.36
MSH6P52701 MTND3P22-201ENST00000510932 243 ntBASIC0.29□□□□□ -2.36
MSH6P52701 RNU6-758P-201ENST00000516292 89 ntBASIC0.29□□□□□ -2.36
MSH6P52701 AL049861.1-201ENST00000603130 150 ntBASIC0.29□□□□□ -2.36
MSH6P52701 AP000942.4-201ENST00000604811 241 ntBASIC0.29□□□□□ -2.36
MSH6P52701 AL162730.1-201ENST00000605734 292 ntBASIC0.29□□□□□ -2.36
MSH6P52701 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC0.29□□□□□ -2.36
MSH6P52701 Z97988.1-201ENST00000637697 135 ntBASIC0.29□□□□□ -2.36
MSH6P52701 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.28□□□□□ -2.36
MSH6P52701 AC090625.1-201ENST00000357130 210 ntBASIC0.28□□□□□ -2.36
MSH6P52701 MIRLET7D-201ENST00000362263 87 ntBASIC0.28□□□□□ -2.36
MSH6P52701 Y_RNA.185-201ENST00000363894 100 ntBASIC0.28□□□□□ -2.36
MSH6P52701 SNORA63C-201ENST00000364578 129 ntBASIC0.28□□□□□ -2.36
MSH6P52701 RNA5SP331-201ENST00000364986 107 ntBASIC0.28□□□□□ -2.36
MSH6P52701 RNU6-913P-201ENST00000390913 95 ntBASIC0.28□□□□□ -2.36
MSH6P52701 Y_RNA.645-201ENST00000391229 102 ntBASIC0.28□□□□□ -2.36
MSH6P52701 SNORD77.4-201ENST00000516158 81 ntBASIC0.28□□□□□ -2.36
MSH6P52701 SNORA18.4-201ENST00000516440 124 ntBASIC0.28□□□□□ -2.36
MSH6P52701 RNU6-897P-201ENST00000517135 105 ntBASIC0.28□□□□□ -2.36
MSH6P52701 AC124312.5-201ENST00000604451 268 ntBASIC0.28□□□□□ -2.36
MSH6P52701 AL133255.1-201ENST00000606374 441 ntBASIC0.28□□□□□ -2.36
MSH6P52701 uc_338.6-201ENST00000613544 171 ntBASIC0.28□□□□□ -2.36
MSH6P52701 AC090971.5-201ENST00000621102 293 ntBASIC0.28□□□□□ -2.36
MSH6P52701 AC090574.1-201ENST00000623186 233 ntBASIC0.28□□□□□ -2.36
MSH6P52701 Y_RNA.14-201ENST00000362415 103 ntBASIC0.27□□□□□ -2.37
MSH6P52701 RNU4-73P-201ENST00000363164 141 ntBASIC0.27□□□□□ -2.37
MSH6P52701 MIR938-201ENST00000401216 83 ntBASIC0.27□□□□□ -2.37
MSH6P52701 MTCO2P24-201ENST00000515611 426 ntBASIC0.27□□□□□ -2.37
MSH6P52701 RNA5SP134-201ENST00000516492 96 ntBASIC0.27□□□□□ -2.37
MSH6P52701 MIR4662B-201ENST00000579498 81 ntBASIC0.27□□□□□ -2.37
MSH6P52701 MIR5093-201ENST00000583199 100 ntBASIC0.27□□□□□ -2.37
MSH6P52701 MIR4795-201ENST00000584182 89 ntBASIC0.27□□□□□ -2.37
MSH6P52701 MIR6740-201ENST00000618268 113 ntBASIC0.27□□□□□ -2.37
MSH6P52701 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC0.26□□□□□ -2.37
MSH6P52701 Y_RNA.37-201ENST00000362606 108 ntBASIC0.26□□□□□ -2.37
MSH6P52701 RNU6-30P-201ENST00000384561 107 ntBASIC0.26□□□□□ -2.37
MSH6P52701 Y_RNA.581-201ENST00000391017 97 ntBASIC0.26□□□□□ -2.37
MSH6P52701 SNORD100-201ENST00000408573 76 ntBASIC0.26□□□□□ -2.37
MSH6P52701 Y_RNA.639-201ENST00000458981 102 ntBASIC0.26□□□□□ -2.37
MSH6P52701 AC002350.1-201ENST00000490759 375 ntBASIC0.26□□□□□ -2.37
MSH6P52701 RNU6-693P-201ENST00000516134 107 ntBASIC0.26□□□□□ -2.37
MSH6P52701 RNU6-397P-201ENST00000516226 104 ntBASIC0.26□□□□□ -2.37
MSH6P52701 Y_RNA.702-201ENST00000516843 96 ntBASIC0.26□□□□□ -2.37
MSH6P52701 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC0.26□□□□□ -2.37
MSH6P52701 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC0.26□□□□□ -2.37
MSH6P52701 MIR4724-201ENST00000579485 89 ntBASIC0.26□□□□□ -2.37
MSH6P52701 MIR4768-201ENST00000585270 74 ntBASIC0.26□□□□□ -2.37
MSH6P52701 SNORA27-201ENST00000384323 126 ntBASIC0.25□□□□□ -2.37
MSH6P52701 RNU6-823P-201ENST00000391042 103 ntBASIC0.25□□□□□ -2.37
MSH6P52701 PMCHL1-202ENST00000423102 261 ntBASIC0.25□□□□□ -2.37
MSH6P52701 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC0.25□□□□□ -2.37
MSH6P52701 MIR5688-201ENST00000580619 83 ntBASIC0.25□□□□□ -2.37
MSH6P52701 AC090897.1-201ENST00000580909 226 ntBASIC0.25□□□□□ -2.37
MSH6P52701 RAC1P9-201ENST00000604990 392 ntBASIC0.25□□□□□ -2.37
MSH6P52701 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC0.24□□□□□ -2.37
MSH6P52701 RNU6-1272P-201ENST00000362776 107 ntBASIC0.24□□□□□ -2.37
MSH6P52701 SNORD42.2-201ENST00000365570 69 ntBASIC0.24□□□□□ -2.37
MSH6P52701 MIR588-201ENST00000384900 83 ntBASIC0.24□□□□□ -2.37
MSH6P52701 MIR548A2-201ENST00000384956 97 ntBASIC0.24□□□□□ -2.37
MSH6P52701 MIR518F-201ENST00000384973 87 ntBASIC0.24□□□□□ -2.37
MSH6P52701 MIR125B2-201ENST00000385128 89 ntBASIC0.24□□□□□ -2.37
MSH6P52701 MIR1252-201ENST00000408861 65 ntBASIC0.24□□□□□ -2.37
MSH6P52701 RNU6-602P-201ENST00000411155 105 ntBASIC0.24□□□□□ -2.37
MSH6P52701 snoU13.2-201ENST00000459201 104 ntBASIC0.24□□□□□ -2.37
MSH6P52701 AC108740.1-201ENST00000498629 225 ntBASIC0.24□□□□□ -2.37
MSH6P52701 RNU7-53P-201ENST00000516705 60 ntBASIC0.24□□□□□ -2.37
MSH6P52701 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC0.24□□□□□ -2.37
MSH6P52701 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC0.24□□□□□ -2.37
MSH6P52701 AC092634.7-201ENST00000621022 103 ntBASIC0.24□□□□□ -2.37
MSH6P52701 MIR367-201ENST00000362299 68 ntBASIC0.23□□□□□ -2.37
MSH6P52701 Y_RNA.31-201ENST00000362574 102 ntBASIC0.23□□□□□ -2.37
MSH6P52701 Y_RNA.105-201ENST00000363182 111 ntBASIC0.23□□□□□ -2.37
MSH6P52701 SNORD44.1-201ENST00000363202 61 ntBASIC0.23□□□□□ -2.37
MSH6P52701 RNU6-326P-201ENST00000365480 107 ntBASIC0.23□□□□□ -2.37
MSH6P52701 SNORD24-201ENST00000383884 75 ntBASIC0.23□□□□□ -2.37
MSH6P52701 SNORD61-201ENST00000384252 73 ntBASIC0.23□□□□□ -2.37
MSH6P52701 MIR526A2-201ENST00000390198 65 ntBASIC0.23□□□□□ -2.37
MSH6P52701 RNU6-1319P-201ENST00000390855 104 ntBASIC0.23□□□□□ -2.37
MSH6P52701 RNU6-747P-201ENST00000390928 104 ntBASIC0.23□□□□□ -2.37
MSH6P52701 RNU6-679P-201ENST00000391003 106 ntBASIC0.23□□□□□ -2.37
MSH6P52701 RNU6-241P-201ENST00000391148 104 ntBASIC0.23□□□□□ -2.37
MSH6P52701 RNU6-447P-201ENST00000410293 104 ntBASIC0.23□□□□□ -2.37
MSH6P52701 RNU6-1118P-201ENST00000410382 104 ntBASIC0.23□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 243.1 ms