Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 MIR4303-201ENST00000581299 66 ntBASIC1.74□□□□□ -2.13
SMARCA1P28370 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC1.74□□□□□ -2.13
SMARCA1P28370 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC1.74□□□□□ -2.13
SMARCA1P28370 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC1.74□□□□□ -2.13
SMARCA1P28370 AP000648.3-201ENST00000623539 4507 ntBASIC1.74□□□□□ -2.13
SMARCA1P28370 Y_RNA.440-201ENST00000384120 114 ntBASIC1.73□□□□□ -2.13
SMARCA1P28370 Y_RNA.488-201ENST00000384403 102 ntBASIC1.73□□□□□ -2.13
SMARCA1P28370 MIR499A-201ENST00000384903 122 ntBASIC1.73□□□□□ -2.13
SMARCA1P28370 MIR570-201ENST00000384917 97 ntBASIC1.73□□□□□ -2.13
SMARCA1P28370 SCARNA15-202ENST00000516881 127 ntBASIC1.73□□□□□ -2.13
SMARCA1P28370 SNORA31.24-201ENST00000517232 57 ntBASIC1.73□□□□□ -2.13
SMARCA1P28370 AC019176.1-201ENST00000518519 225 ntBASIC1.73□□□□□ -2.13
SMARCA1P28370 MIR5197-201ENST00000583721 112 ntBASIC1.73□□□□□ -2.13
SMARCA1P28370 AL645939.4-201ENST00000604495 135 ntBASIC1.73□□□□□ -2.13
SMARCA1P28370 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC1.73□□□□□ -2.13
SMARCA1P28370 Y_RNA.52-201ENST00000362760 96 ntBASIC1.72□□□□□ -2.13
SMARCA1P28370 RNU1-42P-201ENST00000364033 160 ntBASIC1.72□□□□□ -2.13
SMARCA1P28370 Y_RNA.241-201ENST00000364470 117 ntBASIC1.72□□□□□ -2.13
SMARCA1P28370 Y_RNA.355-201ENST00000365462 98 ntBASIC1.72□□□□□ -2.13
SMARCA1P28370 RNU6-1065P-201ENST00000384513 106 ntBASIC1.72□□□□□ -2.13
SMARCA1P28370 SNORA40.5-201ENST00000391061 128 ntBASIC1.72□□□□□ -2.13
SMARCA1P28370 RNU6-460P-201ENST00000391158 108 ntBASIC1.72□□□□□ -2.13
SMARCA1P28370 AL451046.2-201ENST00000403074 277 ntBASIC1.72□□□□□ -2.13
SMARCA1P28370 AL603908.1-201ENST00000406098 201 ntBASIC1.72□□□□□ -2.13
SMARCA1P28370 MIR1323-201ENST00000408090 73 ntBASIC1.72□□□□□ -2.13
SMARCA1P28370 SNX2P2-201ENST00000424553 323 ntBASIC1.72□□□□□ -2.13
SMARCA1P28370 RNU6-426P-201ENST00000516464 97 ntBASIC1.72□□□□□ -2.13
SMARCA1P28370 MIR3937-201ENST00000580135 106 ntBASIC1.72□□□□□ -2.13
SMARCA1P28370 AC131055.1-201ENST00000584626 316 ntBASIC1.72□□□□□ -2.13
SMARCA1P28370 MTND5P32-201ENST00000560711 1802 ntBASIC1.71□□□□□ -2.14
SMARCA1P28370 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.71□□□□□ -2.14
SMARCA1P28370 SNORD115-34-201ENST00000362441 82 ntBASIC1.71□□□□□ -2.14
SMARCA1P28370 SNORD115-12-201ENST00000362583 82 ntBASIC1.71□□□□□ -2.14
SMARCA1P28370 SNORD115-29-201ENST00000362834 82 ntBASIC1.71□□□□□ -2.14
SMARCA1P28370 U8.1-201ENST00000362843 134 ntBASIC1.71□□□□□ -2.14
SMARCA1P28370 SNORD115-9-201ENST00000362912 82 ntBASIC1.71□□□□□ -2.14
SMARCA1P28370 SNORD115-21-201ENST00000362963 81 ntBASIC1.71□□□□□ -2.14
SMARCA1P28370 SNORD115-14-201ENST00000363090 81 ntBASIC1.71□□□□□ -2.14
SMARCA1P28370 SNORD115-13-201ENST00000363358 82 ntBASIC1.71□□□□□ -2.14
SMARCA1P28370 SNORD115-41-201ENST00000363608 82 ntBASIC1.71□□□□□ -2.14
SMARCA1P28370 SNORD115-11-201ENST00000363616 82 ntBASIC1.71□□□□□ -2.14
SMARCA1P28370 SNORD115-5-201ENST00000363633 82 ntBASIC1.71□□□□□ -2.14
SMARCA1P28370 SNORD115-39-201ENST00000363694 82 ntBASIC1.71□□□□□ -2.14
SMARCA1P28370 SNORD115-4-201ENST00000363810 82 ntBASIC1.71□□□□□ -2.14
SMARCA1P28370 SNORD115-16-201ENST00000363887 82 ntBASIC1.71□□□□□ -2.14
SMARCA1P28370 SNORD115-6-201ENST00000363942 82 ntBASIC1.71□□□□□ -2.14
SMARCA1P28370 SNORD115-42-201ENST00000364273 82 ntBASIC1.71□□□□□ -2.14
SMARCA1P28370 SNORD115-15-201ENST00000364809 81 ntBASIC1.71□□□□□ -2.14
SMARCA1P28370 SNORD115-1-201ENST00000364961 82 ntBASIC1.71□□□□□ -2.14
SMARCA1P28370 SNORD115-26-201ENST00000365067 82 ntBASIC1.71□□□□□ -2.14
SMARCA1P28370 RNA5SP363-201ENST00000365072 115 ntBASIC1.71□□□□□ -2.14
SMARCA1P28370 SNORD115-10-201ENST00000365073 81 ntBASIC1.71□□□□□ -2.14
SMARCA1P28370 SNORD115-43-201ENST00000365503 82 ntBASIC1.71□□□□□ -2.14
SMARCA1P28370 Y_RNA.370-201ENST00000365589 108 ntBASIC1.71□□□□□ -2.14
SMARCA1P28370 SNORD115-36-201ENST00000365629 82 ntBASIC1.71□□□□□ -2.14
SMARCA1P28370 Y_RNA.584-201ENST00000391090 114 ntBASIC1.71□□□□□ -2.14
SMARCA1P28370 MIR1304-201ENST00000408243 91 ntBASIC1.71□□□□□ -2.14
SMARCA1P28370 RNU4-62P-201ENST00000410125 130 ntBASIC1.71□□□□□ -2.14
SMARCA1P28370 RNU2-13P-201ENST00000515909 113 ntBASIC1.71□□□□□ -2.14
SMARCA1P28370 RNU2-60P-201ENST00000517290 128 ntBASIC1.71□□□□□ -2.14
SMARCA1P28370 SNORD115-40-201ENST00000606510 82 ntBASIC1.71□□□□□ -2.14
SMARCA1P28370 AL121890.5-201ENST00000620848 304 ntBASIC1.71□□□□□ -2.14
SMARCA1P28370 RNY1P10-201ENST00000363268 113 ntBASIC1.7□□□□□ -2.14
SMARCA1P28370 SNORA1.2-201ENST00000365189 134 ntBASIC1.7□□□□□ -2.14
SMARCA1P28370 SNORA20-201ENST00000384662 132 ntBASIC1.7□□□□□ -2.14
SMARCA1P28370 MIR513C-201ENST00000401352 84 ntBASIC1.7□□□□□ -2.14
SMARCA1P28370 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC1.7□□□□□ -2.14
SMARCA1P28370 RNU6-1149P-201ENST00000516810 97 ntBASIC1.7□□□□□ -2.14
SMARCA1P28370 MIR4764-201ENST00000580680 88 ntBASIC1.7□□□□□ -2.14
SMARCA1P28370 AL512598.1-201ENST00000610158 273 ntBASIC1.7□□□□□ -2.14
SMARCA1P28370 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC1.7□□□□□ -2.14
SMARCA1P28370 SNORA27-201ENST00000384323 126 ntBASIC1.69□□□□□ -2.14
SMARCA1P28370 MIR520C-201ENST00000385005 87 ntBASIC1.69□□□□□ -2.14
SMARCA1P28370 MIR518E-201ENST00000385252 88 ntBASIC1.69□□□□□ -2.14
SMARCA1P28370 MIR320A-201ENST00000385302 82 ntBASIC1.69□□□□□ -2.14
SMARCA1P28370 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.69□□□□□ -2.14
SMARCA1P28370 AP1B1P2-201ENST00000416196 106 ntBASIC1.69□□□□□ -2.14
SMARCA1P28370 BTF3P4-201ENST00000418852 495 ntBASIC1.69□□□□□ -2.14
SMARCA1P28370 RNU1-98P-201ENST00000458992 160 ntBASIC1.69□□□□□ -2.14
SMARCA1P28370 TRMT112P2-201ENST00000512910 132 ntBASIC1.69□□□□□ -2.14
SMARCA1P28370 Y_RNA.686-201ENST00000516548 134 ntBASIC1.69□□□□□ -2.14
SMARCA1P28370 AC090821.2-201ENST00000523552 176 ntBASIC1.69□□□□□ -2.14
SMARCA1P28370 Y_RNA.568-201ENST00000384742 113 ntBASIC1.68□□□□□ -2.14
SMARCA1P28370 RPS27P16-201ENST00000425758 201 ntBASIC1.68□□□□□ -2.14
SMARCA1P28370 AL354695.1-201ENST00000427935 228 ntBASIC1.68□□□□□ -2.14
SMARCA1P28370 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC1.68□□□□□ -2.14
SMARCA1P28370 RNU7-41P-201ENST00000515917 61 ntBASIC1.68□□□□□ -2.14
SMARCA1P28370 RNU7-43P-201ENST00000516554 64 ntBASIC1.68□□□□□ -2.14
SMARCA1P28370 DNAJC19P9-201ENST00000555084 351 ntBASIC1.68□□□□□ -2.14
SMARCA1P28370 MIR3192-201ENST00000584920 77 ntBASIC1.68□□□□□ -2.14
SMARCA1P28370 GHRLOS.1-201ENST00000610995 70 ntBASIC1.68□□□□□ -2.14
SMARCA1P28370 Y_RNA.351-201ENST00000365436 96 ntBASIC1.67□□□□□ -2.14
SMARCA1P28370 AC107297.1-201ENST00000459991 176 ntBASIC1.67□□□□□ -2.14
SMARCA1P28370 AC023790.1-201ENST00000482174 347 ntBASIC1.67□□□□□ -2.14
SMARCA1P28370 RNA5SP236-201ENST00000516169 116 ntBASIC1.67□□□□□ -2.14
SMARCA1P28370 MIR3664-201ENST00000579074 99 ntBASIC1.67□□□□□ -2.14
SMARCA1P28370 MIR4791-201ENST00000607666 84 ntBASIC1.67□□□□□ -2.14
SMARCA1P28370 AL096861.1-201ENST00000610899 123 ntBASIC1.67□□□□□ -2.14
SMARCA1P28370 AL161722.3-201ENST00000605789 2983 ntBASIC1.67□□□□□ -2.14
SMARCA1P28370 RNU6-508P-201ENST00000363231 103 ntBASIC1.66□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 174.8 ms