Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC2.78□□□□□ -1.96
CCDC39Q9UFE4 Y_RNA.95-201ENST00000363079 95 ntBASIC2.78□□□□□ -1.96
CCDC39Q9UFE4 RNU6-679P-201ENST00000391003 106 ntBASIC2.78□□□□□ -1.96
CCDC39Q9UFE4 RNU6-887P-201ENST00000410660 100 ntBASIC2.78□□□□□ -1.96
CCDC39Q9UFE4 Y_RNA.620-201ENST00000411009 88 ntBASIC2.78□□□□□ -1.96
CCDC39Q9UFE4 AL022718.1-201ENST00000412004 84 ntBASIC2.78□□□□□ -1.96
CCDC39Q9UFE4 SNORA31.4-201ENST00000516049 129 ntBASIC2.78□□□□□ -1.96
CCDC39Q9UFE4 RNA5SP320-201ENST00000516263 124 ntBASIC2.78□□□□□ -1.96
CCDC39Q9UFE4 Y_RNA.705-201ENST00000516862 110 ntBASIC2.78□□□□□ -1.96
CCDC39Q9UFE4 MIR21-201ENST00000362134 72 ntBASIC2.77□□□□□ -1.97
CCDC39Q9UFE4 RNU1-23P-201ENST00000363361 144 ntBASIC2.77□□□□□ -1.97
CCDC39Q9UFE4 Y_RNA.336-201ENST00000365307 109 ntBASIC2.77□□□□□ -1.97
CCDC39Q9UFE4 Y_RNA.426-201ENST00000384068 113 ntBASIC2.77□□□□□ -1.97
CCDC39Q9UFE4 Y_RNA.467-201ENST00000384297 102 ntBASIC2.77□□□□□ -1.97
CCDC39Q9UFE4 SNORA7.5-201ENST00000410672 110 ntBASIC2.77□□□□□ -1.97
CCDC39Q9UFE4 AL109933.2-201ENST00000452651 260 ntBASIC2.77□□□□□ -1.97
CCDC39Q9UFE4 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC2.77□□□□□ -1.97
CCDC39Q9UFE4 MIR4668-201ENST00000582284 70 ntBASIC2.77□□□□□ -1.97
CCDC39Q9UFE4 MIR4662A-201ENST00000637499 67 ntBASIC2.77□□□□□ -1.97
CCDC39Q9UFE4 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC2.77□□□□□ -1.97
CCDC39Q9UFE4 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
CCDC39Q9UFE4 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
CCDC39Q9UFE4 MIRLET7G-201ENST00000362280 84 ntBASIC2.76□□□□□ -1.97
CCDC39Q9UFE4 RNU6-776P-201ENST00000364403 104 ntBASIC2.76□□□□□ -1.97
CCDC39Q9UFE4 RNU6-1022P-201ENST00000365049 104 ntBASIC2.76□□□□□ -1.97
CCDC39Q9UFE4 Y_RNA.377-201ENST00000365644 108 ntBASIC2.76□□□□□ -1.97
CCDC39Q9UFE4 RNU2-48P-201ENST00000410694 191 ntBASIC2.76□□□□□ -1.97
CCDC39Q9UFE4 AL035398.1-201ENST00000430869 322 ntBASIC2.76□□□□□ -1.97
CCDC39Q9UFE4 AC108938.1-201ENST00000451204 136 ntBASIC2.76□□□□□ -1.97
CCDC39Q9UFE4 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC2.76□□□□□ -1.97
CCDC39Q9UFE4 Y_RNA.659-201ENST00000515994 113 ntBASIC2.76□□□□□ -1.97
CCDC39Q9UFE4 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC2.76□□□□□ -1.97
CCDC39Q9UFE4 AL353149.1-201ENST00000610667 244 ntBASIC2.76□□□□□ -1.97
CCDC39Q9UFE4 U4atac.1-201ENST00000618345 95 ntBASIC2.76□□□□□ -1.97
CCDC39Q9UFE4 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC2.76□□□□□ -1.97
CCDC39Q9UFE4 RNA5SP68-201ENST00000363885 119 ntBASIC2.75□□□□□ -1.97
CCDC39Q9UFE4 SNORA8-201ENST00000384574 139 ntBASIC2.75□□□□□ -1.97
CCDC39Q9UFE4 MIR95-201ENST00000385072 81 ntBASIC2.75□□□□□ -1.97
CCDC39Q9UFE4 MIR561-201ENST00000385216 97 ntBASIC2.75□□□□□ -1.97
CCDC39Q9UFE4 RNA5SP323-201ENST00000391094 133 ntBASIC2.75□□□□□ -1.97
CCDC39Q9UFE4 RNU4ATAC16P-201ENST00000408512 126 ntBASIC2.75□□□□□ -1.97
CCDC39Q9UFE4 RNU7-94P-201ENST00000459576 63 ntBASIC2.75□□□□□ -1.97
CCDC39Q9UFE4 RPL23AP63-201ENST00000498752 471 ntBASIC2.75□□□□□ -1.97
CCDC39Q9UFE4 MIR6895-201ENST00000613497 78 ntBASIC2.75□□□□□ -1.97
CCDC39Q9UFE4 AC021613.1-201ENST00000623880 111 ntBASIC2.75□□□□□ -1.97
CCDC39Q9UFE4 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
CCDC39Q9UFE4 ICE2P2-201ENST00000483823 2787 ntBASIC2.75□□□□□ -1.97
CCDC39Q9UFE4 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.75□□□□□ -1.97
CCDC39Q9UFE4 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC2.74□□□□□ -1.97
CCDC39Q9UFE4 SNORA67.1-201ENST00000364749 141 ntBASIC2.74□□□□□ -1.97
CCDC39Q9UFE4 RNU6-1201P-201ENST00000384227 107 ntBASIC2.74□□□□□ -1.97
CCDC39Q9UFE4 SNORA27-201ENST00000384323 126 ntBASIC2.74□□□□□ -1.97
CCDC39Q9UFE4 NDUFB4P4-201ENST00000404822 243 ntBASIC2.74□□□□□ -1.97
CCDC39Q9UFE4 POLR2J4-204ENST00000418424 324 ntBASIC2.74□□□□□ -1.97
CCDC39Q9UFE4 MIR6817-201ENST00000615588 66 ntBASIC2.74□□□□□ -1.97
CCDC39Q9UFE4 AC006160.2-201ENST00000637708 154 ntBASIC2.74□□□□□ -1.97
CCDC39Q9UFE4 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC2.74□□□□□ -1.97
CCDC39Q9UFE4 SNORD114-30-201ENST00000364448 72 ntBASIC2.73□□□□□ -1.97
CCDC39Q9UFE4 Y_RNA.299-201ENST00000364973 94 ntBASIC2.73□□□□□ -1.97
CCDC39Q9UFE4 RNY1P4-201ENST00000384595 115 ntBASIC2.73□□□□□ -1.97
CCDC39Q9UFE4 AL359511.1-201ENST00000402970 211 ntBASIC2.73□□□□□ -1.97
CCDC39Q9UFE4 RNU4-69P-201ENST00000410677 143 ntBASIC2.73□□□□□ -1.97
CCDC39Q9UFE4 RNU6-998P-201ENST00000515894 101 ntBASIC2.73□□□□□ -1.97
CCDC39Q9UFE4 RNA5SP148-201ENST00000516527 94 ntBASIC2.73□□□□□ -1.97
CCDC39Q9UFE4 RNU6-1018P-201ENST00000516577 106 ntBASIC2.73□□□□□ -1.97
CCDC39Q9UFE4 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC2.73□□□□□ -1.97
CCDC39Q9UFE4 CTSLP2-204ENST00000629029 392 ntBASIC2.73□□□□□ -1.97
CCDC39Q9UFE4 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
CCDC39Q9UFE4 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
CCDC39Q9UFE4 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC2.72□□□□□ -1.97
CCDC39Q9UFE4 RNU6-652P-201ENST00000365488 107 ntBASIC2.72□□□□□ -1.97
CCDC39Q9UFE4 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.72□□□□□ -1.97
CCDC39Q9UFE4 SNORD38C-201ENST00000384381 69 ntBASIC2.72□□□□□ -1.97
CCDC39Q9UFE4 Y_RNA.611-201ENST00000410682 108 ntBASIC2.72□□□□□ -1.97
CCDC39Q9UFE4 RNU2-40P-201ENST00000410833 196 ntBASIC2.72□□□□□ -1.97
CCDC39Q9UFE4 AL163195.1-201ENST00000496941 348 ntBASIC2.72□□□□□ -1.97
CCDC39Q9UFE4 SNORA48.11-201ENST00000517015 89 ntBASIC2.72□□□□□ -1.97
CCDC39Q9UFE4 IGLV3-17-201ENST00000519099 244 ntBASIC2.72□□□□□ -1.97
CCDC39Q9UFE4 AC092881.1-201ENST00000638218 2733 ntBASIC2.72□□□□□ -1.97
CCDC39Q9UFE4 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
CCDC39Q9UFE4 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC2.71□□□□□ -1.98
CCDC39Q9UFE4 Y_RNA.4-201ENST00000362333 112 ntBASIC2.71□□□□□ -1.98
CCDC39Q9UFE4 Y_RNA.171-201ENST00000363760 102 ntBASIC2.71□□□□□ -1.98
CCDC39Q9UFE4 Y_RNA.241-201ENST00000364470 117 ntBASIC2.71□□□□□ -1.98
CCDC39Q9UFE4 RNU6-616P-201ENST00000384353 107 ntBASIC2.71□□□□□ -1.98
CCDC39Q9UFE4 Y_RNA.494-201ENST00000384432 111 ntBASIC2.71□□□□□ -1.98
CCDC39Q9UFE4 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC2.71□□□□□ -1.98
CCDC39Q9UFE4 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC2.71□□□□□ -1.98
CCDC39Q9UFE4 RNU7-96P-201ENST00000459535 64 ntBASIC2.71□□□□□ -1.98
CCDC39Q9UFE4 TRBV12-1-201ENST00000479785 344 ntBASIC2.71□□□□□ -1.98
CCDC39Q9UFE4 MIR5694-201ENST00000581190 76 ntBASIC2.71□□□□□ -1.98
CCDC39Q9UFE4 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC2.71□□□□□ -1.98
CCDC39Q9UFE4 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.98
CCDC39Q9UFE4 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
CCDC39Q9UFE4 SNORD116-10-201ENST00000363791 102 ntBASIC2.7□□□□□ -1.98
CCDC39Q9UFE4 SNORD58A-201ENST00000383875 65 ntBASIC2.7□□□□□ -1.98
CCDC39Q9UFE4 RNU6-788P-201ENST00000390967 104 ntBASIC2.7□□□□□ -1.98
CCDC39Q9UFE4 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC2.7□□□□□ -1.98
CCDC39Q9UFE4 MIR1270-201ENST00000459320 83 ntBASIC2.7□□□□□ -1.98
CCDC39Q9UFE4 AC104435.1-201ENST00000483483 166 ntBASIC2.7□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 180.2 ms