Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 SNORD77.4-201ENST00000516158 81 ntBASIC1.32□□□□□ -2.2
LIMA1Q9UHB6 RNU6-561P-201ENST00000516222 102 ntBASIC1.32□□□□□ -2.2
LIMA1Q9UHB6 Z83818.1-201ENST00000603584 150 ntBASIC1.32□□□□□ -2.2
LIMA1Q9UHB6 RNU2-4P-201ENST00000606190 192 ntBASIC1.32□□□□□ -2.2
LIMA1Q9UHB6 AL391903.3-201ENST00000612158 163 ntBASIC1.32□□□□□ -2.2
LIMA1Q9UHB6 uc_338.4-201ENST00000616635 176 ntBASIC1.32□□□□□ -2.2
LIMA1Q9UHB6 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.31□□□□□ -2.2
LIMA1Q9UHB6 Y_RNA.140-201ENST00000363474 103 ntBASIC1.31□□□□□ -2.2
LIMA1Q9UHB6 RNU6-442P-201ENST00000383968 104 ntBASIC1.31□□□□□ -2.2
LIMA1Q9UHB6 Y_RNA.435-201ENST00000384095 112 ntBASIC1.31□□□□□ -2.2
LIMA1Q9UHB6 Y_RNA.571-201ENST00000384753 98 ntBASIC1.31□□□□□ -2.2
LIMA1Q9UHB6 RNU6-907P-201ENST00000390924 102 ntBASIC1.31□□□□□ -2.2
LIMA1Q9UHB6 RNU4-62P-201ENST00000410125 130 ntBASIC1.31□□□□□ -2.2
LIMA1Q9UHB6 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC1.31□□□□□ -2.2
LIMA1Q9UHB6 Y_RNA.644-201ENST00000459006 113 ntBASIC1.31□□□□□ -2.2
LIMA1Q9UHB6 RN7SKP164-201ENST00000516138 266 ntBASIC1.31□□□□□ -2.2
LIMA1Q9UHB6 Y_RNA.674-201ENST00000516362 113 ntBASIC1.31□□□□□ -2.2
LIMA1Q9UHB6 RNU6-1007P-201ENST00000516586 107 ntBASIC1.31□□□□□ -2.2
LIMA1Q9UHB6 MIR4421-201ENST00000578133 69 ntBASIC1.31□□□□□ -2.2
LIMA1Q9UHB6 Y_RNA.7-201ENST00000362352 102 ntBASIC1.3□□□□□ -2.2
LIMA1Q9UHB6 Y_RNA.238-201ENST00000364441 102 ntBASIC1.3□□□□□ -2.2
LIMA1Q9UHB6 RNU6-484P-201ENST00000384016 107 ntBASIC1.3□□□□□ -2.2
LIMA1Q9UHB6 Y_RNA.785-201ENST00000384290 109 ntBASIC1.3□□□□□ -2.2
LIMA1Q9UHB6 Y_RNA.587-201ENST00000391210 103 ntBASIC1.3□□□□□ -2.2
LIMA1Q9UHB6 AL606845.1-201ENST00000404881 255 ntBASIC1.3□□□□□ -2.2
LIMA1Q9UHB6 RNU6-1054P-201ENST00000411293 104 ntBASIC1.3□□□□□ -2.2
LIMA1Q9UHB6 AC048334.1-201ENST00000477975 159 ntBASIC1.3□□□□□ -2.2
LIMA1Q9UHB6 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC1.3□□□□□ -2.2
LIMA1Q9UHB6 RNU7-149P-201ENST00000516739 59 ntBASIC1.3□□□□□ -2.2
LIMA1Q9UHB6 SNORA74.3-201ENST00000517108 154 ntBASIC1.3□□□□□ -2.2
LIMA1Q9UHB6 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC1.3□□□□□ -2.2
LIMA1Q9UHB6 AL096861.1-201ENST00000610899 123 ntBASIC1.3□□□□□ -2.2
LIMA1Q9UHB6 AC108706.1-201ENST00000611053 297 ntBASIC1.3□□□□□ -2.2
LIMA1Q9UHB6 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC1.3□□□□□ -2.2
LIMA1Q9UHB6 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC1.3□□□□□ -2.2
LIMA1Q9UHB6 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC1.3□□□□□ -2.2
LIMA1Q9UHB6 RNU6-1138P-201ENST00000365359 106 ntBASIC1.29□□□□□ -2.2
LIMA1Q9UHB6 Y_RNA.412-201ENST00000384001 104 ntBASIC1.29□□□□□ -2.2
LIMA1Q9UHB6 AC108667.1-201ENST00000428618 249 ntBASIC1.29□□□□□ -2.2
LIMA1Q9UHB6 AC245047.7-201ENST00000440265 293 ntBASIC1.29□□□□□ -2.2
LIMA1Q9UHB6 AC009474.2-201ENST00000451383 136 ntBASIC1.29□□□□□ -2.2
LIMA1Q9UHB6 AL133373.1-201ENST00000497098 94 ntBASIC1.29□□□□□ -2.2
LIMA1Q9UHB6 SNORA31.4-201ENST00000516049 129 ntBASIC1.29□□□□□ -2.2
LIMA1Q9UHB6 AL022345.2-201ENST00000606307 135 ntBASIC1.29□□□□□ -2.2
LIMA1Q9UHB6 RNU6-1020P-201ENST00000363684 107 ntBASIC1.28□□□□□ -2.2
LIMA1Q9UHB6 RNU6-103P-201ENST00000363686 107 ntBASIC1.28□□□□□ -2.2
LIMA1Q9UHB6 RNU6-682P-201ENST00000363843 106 ntBASIC1.28□□□□□ -2.2
LIMA1Q9UHB6 SNORD38C-201ENST00000384381 69 ntBASIC1.28□□□□□ -2.2
LIMA1Q9UHB6 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.28□□□□□ -2.2
LIMA1Q9UHB6 RNU2-64P-201ENST00000411315 191 ntBASIC1.28□□□□□ -2.2
LIMA1Q9UHB6 AL591704.2-201ENST00000421658 181 ntBASIC1.28□□□□□ -2.2
LIMA1Q9UHB6 SNRPGP8-201ENST00000454064 226 ntBASIC1.28□□□□□ -2.2
LIMA1Q9UHB6 RNU6-1219P-201ENST00000516143 112 ntBASIC1.28□□□□□ -2.2
LIMA1Q9UHB6 Y_RNA.700-201ENST00000516806 100 ntBASIC1.28□□□□□ -2.2
LIMA1Q9UHB6 SNORA18.7-201ENST00000516910 131 ntBASIC1.28□□□□□ -2.2
LIMA1Q9UHB6 SNORA81.3-201ENST00000517283 198 ntBASIC1.28□□□□□ -2.2
LIMA1Q9UHB6 AC109810.1-201ENST00000534066 224 ntBASIC1.28□□□□□ -2.2
LIMA1Q9UHB6 MIR4744-201ENST00000581563 82 ntBASIC1.28□□□□□ -2.2
LIMA1Q9UHB6 MIR4769-201ENST00000584126 77 ntBASIC1.28□□□□□ -2.2
LIMA1Q9UHB6 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC1.28□□□□□ -2.2
LIMA1Q9UHB6 U6.106-201ENST00000636360 105 ntBASIC1.28□□□□□ -2.2
LIMA1Q9UHB6 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.28□□□□□ -2.21
LIMA1Q9UHB6 Y_RNA.121-201ENST00000363309 113 ntBASIC1.27□□□□□ -2.21
LIMA1Q9UHB6 SNORD45.3-201ENST00000363836 72 ntBASIC1.27□□□□□ -2.21
LIMA1Q9UHB6 Y_RNA.233-201ENST00000364407 101 ntBASIC1.27□□□□□ -2.21
LIMA1Q9UHB6 Y_RNA.242-201ENST00000364473 110 ntBASIC1.27□□□□□ -2.21
LIMA1Q9UHB6 SNORA25.8-201ENST00000364831 128 ntBASIC1.27□□□□□ -2.21
LIMA1Q9UHB6 RNY3P5-201ENST00000384127 102 ntBASIC1.27□□□□□ -2.21
LIMA1Q9UHB6 SNORA25-201ENST00000384384 134 ntBASIC1.27□□□□□ -2.21
LIMA1Q9UHB6 Y_RNA.486-201ENST00000384398 107 ntBASIC1.27□□□□□ -2.21
LIMA1Q9UHB6 RNU6-939P-201ENST00000384634 107 ntBASIC1.27□□□□□ -2.21
LIMA1Q9UHB6 RNU6-578P-201ENST00000390980 103 ntBASIC1.27□□□□□ -2.21
LIMA1Q9UHB6 RNU6-1228P-201ENST00000391014 107 ntBASIC1.27□□□□□ -2.21
LIMA1Q9UHB6 Y_RNA.622-201ENST00000411091 108 ntBASIC1.27□□□□□ -2.21
LIMA1Q9UHB6 MTND5P15-201ENST00000434246 349 ntBASIC1.27□□□□□ -2.21
LIMA1Q9UHB6 RNU7-120P-201ENST00000459334 63 ntBASIC1.27□□□□□ -2.21
LIMA1Q9UHB6 AP002392.1-201ENST00000537692 208 ntBASIC1.27□□□□□ -2.21
LIMA1Q9UHB6 AC004792.1-201ENST00000614523 137 ntBASIC1.27□□□□□ -2.21
LIMA1Q9UHB6 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.26□□□□□ -2.21
LIMA1Q9UHB6 Y_RNA.29-201ENST00000362570 113 ntBASIC1.26□□□□□ -2.21
LIMA1Q9UHB6 Y_RNA.91-201ENST00000363042 107 ntBASIC1.26□□□□□ -2.21
LIMA1Q9UHB6 RNU6-268P-201ENST00000364174 107 ntBASIC1.26□□□□□ -2.21
LIMA1Q9UHB6 RNU6-275P-201ENST00000364910 107 ntBASIC1.26□□□□□ -2.21
LIMA1Q9UHB6 RNU4-70P-201ENST00000384579 139 ntBASIC1.26□□□□□ -2.21
LIMA1Q9UHB6 MIR548A2-201ENST00000384956 97 ntBASIC1.26□□□□□ -2.21
LIMA1Q9UHB6 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.26□□□□□ -2.21
LIMA1Q9UHB6 RNU6-910P-201ENST00000390844 107 ntBASIC1.26□□□□□ -2.21
LIMA1Q9UHB6 MIR1285-1-201ENST00000408593 84 ntBASIC1.26□□□□□ -2.21
LIMA1Q9UHB6 Y_RNA.793-201ENST00000411222 111 ntBASIC1.26□□□□□ -2.21
LIMA1Q9UHB6 AL138752.1-201ENST00000452964 351 ntBASIC1.26□□□□□ -2.21
LIMA1Q9UHB6 AC023449.1-201ENST00000454464 154 ntBASIC1.26□□□□□ -2.21
LIMA1Q9UHB6 RNU7-95P-201ENST00000459222 64 ntBASIC1.26□□□□□ -2.21
LIMA1Q9UHB6 SNORD123-201ENST00000459473 70 ntBASIC1.26□□□□□ -2.21
LIMA1Q9UHB6 SNORA70.22-201ENST00000517160 124 ntBASIC1.26□□□□□ -2.21
LIMA1Q9UHB6 MIR3124-201ENST00000582636 67 ntBASIC1.26□□□□□ -2.21
LIMA1Q9UHB6 MIR3192-201ENST00000584920 77 ntBASIC1.26□□□□□ -2.21
LIMA1Q9UHB6 AC097639.2-201ENST00000603159 172 ntBASIC1.26□□□□□ -2.21
LIMA1Q9UHB6 Pinc.1-201ENST00000616452 154 ntBASIC1.26□□□□□ -2.21
LIMA1Q9UHB6 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.25□□□□□ -2.21
LIMA1Q9UHB6 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.25□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 185.7 ms