Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 AC012433.1-201ENST00000588916 398 ntBASIC1.22□□□□□ -2.21
ZNF541Q9H0D2 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC1.22□□□□□ -2.21
ZNF541Q9H0D2 RNU6-211P-201ENST00000384047 107 ntBASIC1.21□□□□□ -2.22
ZNF541Q9H0D2 MIR532-201ENST00000385025 91 ntBASIC1.21□□□□□ -2.22
ZNF541Q9H0D2 SNORD41-201ENST00000386967 70 ntBASIC1.21□□□□□ -2.22
ZNF541Q9H0D2 RNU2-38P-201ENST00000410856 79 ntBASIC1.21□□□□□ -2.22
ZNF541Q9H0D2 MTND3P2-201ENST00000438452 342 ntBASIC1.21□□□□□ -2.22
ZNF541Q9H0D2 SNORA31.4-201ENST00000516049 129 ntBASIC1.21□□□□□ -2.22
ZNF541Q9H0D2 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC1.21□□□□□ -2.22
ZNF541Q9H0D2 AL590095.2-201ENST00000604136 117 ntBASIC1.21□□□□□ -2.22
ZNF541Q9H0D2 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.2□□□□□ -2.22
ZNF541Q9H0D2 SNORD127-201ENST00000458892 86 ntBASIC1.2□□□□□ -2.22
ZNF541Q9H0D2 AC048334.1-201ENST00000477975 159 ntBASIC1.2□□□□□ -2.22
ZNF541Q9H0D2 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC1.2□□□□□ -2.22
ZNF541Q9H0D2 SNORA31.2-201ENST00000516019 134 ntBASIC1.2□□□□□ -2.22
ZNF541Q9H0D2 Y_RNA.679-201ENST00000516416 91 ntBASIC1.2□□□□□ -2.22
ZNF541Q9H0D2 AC090142.3-201ENST00000519012 385 ntBASIC1.2□□□□□ -2.22
ZNF541Q9H0D2 MIR4714-201ENST00000580728 77 ntBASIC1.2□□□□□ -2.22
ZNF541Q9H0D2 U2.14-201ENST00000615943 113 ntBASIC1.2□□□□□ -2.22
ZNF541Q9H0D2 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC1.2□□□□□ -2.22
ZNF541Q9H0D2 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.2□□□□□ -2.22
ZNF541Q9H0D2 RNU4-10P-201ENST00000364383 140 ntBASIC1.19□□□□□ -2.22
ZNF541Q9H0D2 Y_RNA.433-201ENST00000384089 102 ntBASIC1.19□□□□□ -2.22
ZNF541Q9H0D2 RNU6-574P-201ENST00000384265 107 ntBASIC1.19□□□□□ -2.22
ZNF541Q9H0D2 RNU6-1067P-201ENST00000384752 107 ntBASIC1.19□□□□□ -2.22
ZNF541Q9H0D2 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC1.19□□□□□ -2.22
ZNF541Q9H0D2 SNORD11-201ENST00000459124 84 ntBASIC1.19□□□□□ -2.22
ZNF541Q9H0D2 SNORD111.1-201ENST00000516421 86 ntBASIC1.19□□□□□ -2.22
ZNF541Q9H0D2 RNU6-165P-201ENST00000517170 99 ntBASIC1.19□□□□□ -2.22
ZNF541Q9H0D2 AL049861.1-201ENST00000603130 150 ntBASIC1.19□□□□□ -2.22
ZNF541Q9H0D2 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.18□□□□□ -2.22
ZNF541Q9H0D2 RNU6-910P-201ENST00000390844 107 ntBASIC1.18□□□□□ -2.22
ZNF541Q9H0D2 AL603910.2-201ENST00000407268 136 ntBASIC1.18□□□□□ -2.22
ZNF541Q9H0D2 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC1.18□□□□□ -2.22
ZNF541Q9H0D2 SNORD2.1-201ENST00000458762 69 ntBASIC1.18□□□□□ -2.22
ZNF541Q9H0D2 Y_RNA.668-201ENST00000516233 93 ntBASIC1.18□□□□□ -2.22
ZNF541Q9H0D2 SNORA74.3-201ENST00000517108 154 ntBASIC1.18□□□□□ -2.22
ZNF541Q9H0D2 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC1.18□□□□□ -2.22
ZNF541Q9H0D2 MIR4698-201ENST00000577795 80 ntBASIC1.18□□□□□ -2.22
ZNF541Q9H0D2 MIR4503-201ENST00000582187 83 ntBASIC1.18□□□□□ -2.22
ZNF541Q9H0D2 BX284668.6-201ENST00000606899 438 ntBASIC1.18□□□□□ -2.22
ZNF541Q9H0D2 MIR6857-201ENST00000613267 93 ntBASIC1.18□□□□□ -2.22
ZNF541Q9H0D2 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC1.18□□□□□ -2.22
ZNF541Q9H0D2 Y_RNA.802-201ENST00000614892 130 ntBASIC1.18□□□□□ -2.22
ZNF541Q9H0D2 Y_RNA.82-201ENST00000363000 102 ntBASIC1.17□□□□□ -2.22
ZNF541Q9H0D2 Y_RNA.92-201ENST00000363043 102 ntBASIC1.17□□□□□ -2.22
ZNF541Q9H0D2 Y_RNA.115-201ENST00000363272 98 ntBASIC1.17□□□□□ -2.22
ZNF541Q9H0D2 Y_RNA.235-201ENST00000364412 102 ntBASIC1.17□□□□□ -2.22
ZNF541Q9H0D2 Y_RNA.306-201ENST00000365015 102 ntBASIC1.17□□□□□ -2.22
ZNF541Q9H0D2 Y_RNA.312-201ENST00000365089 102 ntBASIC1.17□□□□□ -2.22
ZNF541Q9H0D2 Y_RNA.322-201ENST00000365151 102 ntBASIC1.17□□□□□ -2.22
ZNF541Q9H0D2 SNORA25-201ENST00000384384 134 ntBASIC1.17□□□□□ -2.22
ZNF541Q9H0D2 Y_RNA.562-201ENST00000384695 113 ntBASIC1.17□□□□□ -2.22
ZNF541Q9H0D2 Y_RNA.572-201ENST00000384757 98 ntBASIC1.17□□□□□ -2.22
ZNF541Q9H0D2 RNA5SP496-201ENST00000391240 109 ntBASIC1.17□□□□□ -2.22
ZNF541Q9H0D2 Y_RNA.650-201ENST00000459002 102 ntBASIC1.17□□□□□ -2.22
ZNF541Q9H0D2 MTND1P19-201ENST00000511780 315 ntBASIC1.17□□□□□ -2.22
ZNF541Q9H0D2 Y_RNA.777-201ENST00000516982 102 ntBASIC1.17□□□□□ -2.22
ZNF541Q9H0D2 Y_RNA.771-201ENST00000598668 102 ntBASIC1.17□□□□□ -2.22
ZNF541Q9H0D2 AL021707.8-201ENST00000609428 183 ntBASIC1.17□□□□□ -2.22
ZNF541Q9H0D2 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC1.17□□□□□ -2.22
ZNF541Q9H0D2 Y_RNA.789-201ENST00000622480 102 ntBASIC1.17□□□□□ -2.22
ZNF541Q9H0D2 Y_RNA.24-201ENST00000362508 103 ntBASIC1.16□□□□□ -2.22
ZNF541Q9H0D2 Y_RNA.54-201ENST00000362766 105 ntBASIC1.16□□□□□ -2.22
ZNF541Q9H0D2 Y_RNA.288-201ENST00000364854 92 ntBASIC1.16□□□□□ -2.22
ZNF541Q9H0D2 Y_RNA.587-201ENST00000391210 103 ntBASIC1.16□□□□□ -2.22
ZNF541Q9H0D2 Y_RNA.590-201ENST00000410140 107 ntBASIC1.16□□□□□ -2.22
ZNF541Q9H0D2 AL133373.1-201ENST00000497098 94 ntBASIC1.16□□□□□ -2.22
ZNF541Q9H0D2 MIR4282-201ENST00000583613 67 ntBASIC1.16□□□□□ -2.22
ZNF541Q9H0D2 AC008507.4-201ENST00000585464 127 ntBASIC1.16□□□□□ -2.22
ZNF541Q9H0D2 AL022345.2-201ENST00000606307 135 ntBASIC1.16□□□□□ -2.22
ZNF541Q9H0D2 Pinc.1-201ENST00000616452 154 ntBASIC1.16□□□□□ -2.22
ZNF541Q9H0D2 AC015726.2-201ENST00000620112 122 ntBASIC1.16□□□□□ -2.22
ZNF541Q9H0D2 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.16□□□□□ -2.22
ZNF541Q9H0D2 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC1.16□□□□□ -2.22
ZNF541Q9H0D2 Y_RNA.193-201ENST00000363979 102 ntBASIC1.15□□□□□ -2.22
ZNF541Q9H0D2 Y_RNA.277-201ENST00000364754 102 ntBASIC1.15□□□□□ -2.22
ZNF541Q9H0D2 Y_RNA.352-201ENST00000365439 102 ntBASIC1.15□□□□□ -2.22
ZNF541Q9H0D2 SNORA8.3-201ENST00000384679 139 ntBASIC1.15□□□□□ -2.22
ZNF541Q9H0D2 MIR618-201ENST00000385287 98 ntBASIC1.15□□□□□ -2.22
ZNF541Q9H0D2 SNORD72-201ENST00000390994 80 ntBASIC1.15□□□□□ -2.22
ZNF541Q9H0D2 SNRPGP14-201ENST00000435400 219 ntBASIC1.15□□□□□ -2.22
ZNF541Q9H0D2 AC245047.7-201ENST00000440265 293 ntBASIC1.15□□□□□ -2.22
ZNF541Q9H0D2 SNORD123-201ENST00000459473 70 ntBASIC1.15□□□□□ -2.22
ZNF541Q9H0D2 RN7SKP179-201ENST00000516126 217 ntBASIC1.15□□□□□ -2.22
ZNF541Q9H0D2 MIR4764-201ENST00000580680 88 ntBASIC1.15□□□□□ -2.22
ZNF541Q9H0D2 AC011921.3-201ENST00000605540 361 ntBASIC1.15□□□□□ -2.22
ZNF541Q9H0D2 AL162730.1-201ENST00000605734 292 ntBASIC1.15□□□□□ -2.22
ZNF541Q9H0D2 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC1.15□□□□□ -2.22
ZNF541Q9H0D2 uc_338.4-201ENST00000616635 176 ntBASIC1.15□□□□□ -2.22
ZNF541Q9H0D2 Y_RNA.76-201ENST00000362931 109 ntBASIC1.15□□□□□ -2.23
ZNF541Q9H0D2 RNU6-268P-201ENST00000364174 107 ntBASIC1.15□□□□□ -2.23
ZNF541Q9H0D2 RNU6-196P-201ENST00000384315 107 ntBASIC1.15□□□□□ -2.23
ZNF541Q9H0D2 Y_RNA.556-201ENST00000384677 113 ntBASIC1.15□□□□□ -2.23
ZNF541Q9H0D2 MIR1302-3-201ENST00000408128 138 ntBASIC1.15□□□□□ -2.23
ZNF541Q9H0D2 MIR1285-1-201ENST00000408593 84 ntBASIC1.15□□□□□ -2.23
ZNF541Q9H0D2 RNU6-1054P-201ENST00000411293 104 ntBASIC1.15□□□□□ -2.23
ZNF541Q9H0D2 AC023051.1-201ENST00000414098 876 ntTSL 5 BASIC1.15□□□□□ -2.23
ZNF541Q9H0D2 Y_RNA.680-201ENST00000516441 93 ntBASIC1.15□□□□□ -2.23
ZNF541Q9H0D2 RNU7-43P-201ENST00000516554 64 ntBASIC1.15□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 169.2 ms