Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 Y_RNA.242-201ENST00000364473 110 ntBASIC0.43□□□□□ -2.34
MSH6P52701 SNORA1.2-201ENST00000365189 134 ntBASIC0.43□□□□□ -2.34
MSH6P52701 SNORA72.4-201ENST00000384174 132 ntBASIC0.43□□□□□ -2.34
MSH6P52701 SNORA51.10-201ENST00000384418 136 ntBASIC0.43□□□□□ -2.34
MSH6P52701 RNU6-21P-201ENST00000384710 107 ntBASIC0.43□□□□□ -2.34
MSH6P52701 RNU6-1248P-201ENST00000391096 64 ntBASIC0.43□□□□□ -2.34
MSH6P52701 Z95118.1-201ENST00000421372 247 ntBASIC0.43□□□□□ -2.34
MSH6P52701 MTND1P14-201ENST00000427400 950 ntBASIC0.43□□□□□ -2.34
MSH6P52701 SNORD11-201ENST00000459124 84 ntBASIC0.43□□□□□ -2.34
MSH6P52701 snoU13.19-201ENST00000459148 104 ntBASIC0.43□□□□□ -2.34
MSH6P52701 SEPT14P8-201ENST00000508026 178 ntBASIC0.43□□□□□ -2.34
MSH6P52701 SNORA72.1-201ENST00000363485 129 ntBASIC0.42□□□□□ -2.34
MSH6P52701 RNU6ATAC11P-201ENST00000408541 125 ntBASIC0.42□□□□□ -2.34
MSH6P52701 RNU6-847P-201ENST00000411115 108 ntBASIC0.42□□□□□ -2.34
MSH6P52701 AL844175.1-201ENST00000455153 323 ntTSL 5 BASIC0.42□□□□□ -2.34
MSH6P52701 Y_RNA.661-201ENST00000516003 99 ntBASIC0.42□□□□□ -2.34
MSH6P52701 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC0.42□□□□□ -2.34
MSH6P52701 SNORD113-5-201ENST00000607261 78 ntBASIC0.42□□□□□ -2.34
MSH6P52701 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.41□□□□□ -2.34
MSH6P52701 SNORD18A-201ENST00000363753 72 ntBASIC0.41□□□□□ -2.34
MSH6P52701 SNORD45.3-201ENST00000363836 72 ntBASIC0.41□□□□□ -2.34
MSH6P52701 Y_RNA.222-201ENST00000364264 102 ntBASIC0.41□□□□□ -2.34
MSH6P52701 Y_RNA.286-201ENST00000364813 102 ntBASIC0.41□□□□□ -2.34
MSH6P52701 RNY3-201ENST00000365484 102 ntBASIC0.41□□□□□ -2.34
MSH6P52701 Y_RNA.376-201ENST00000365638 108 ntBASIC0.41□□□□□ -2.34
MSH6P52701 Y_RNA.526-201ENST00000384572 110 ntBASIC0.41□□□□□ -2.34
MSH6P52701 RNU6-1237P-201ENST00000384777 107 ntBASIC0.41□□□□□ -2.34
MSH6P52701 SNORA26.5-201ENST00000391215 123 ntBASIC0.41□□□□□ -2.34
MSH6P52701 RNU6ATAC19P-201ENST00000408096 110 ntBASIC0.41□□□□□ -2.34
MSH6P52701 RNU6-976P-201ENST00000516086 111 ntBASIC0.41□□□□□ -2.34
MSH6P52701 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC0.41□□□□□ -2.34
MSH6P52701 AC122108.2-201ENST00000611946 526 ntBASIC0.41□□□□□ -2.34
MSH6P52701 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.41□□□□□ -2.34
MSH6P52701 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC0.4□□□□□ -2.35
MSH6P52701 MIR377-201ENST00000362145 69 ntBASIC0.4□□□□□ -2.35
MSH6P52701 RNU4-80P-201ENST00000363200 141 ntBASIC0.4□□□□□ -2.35
MSH6P52701 SNORA2A-201ENST00000383885 135 ntBASIC0.4□□□□□ -2.35
MSH6P52701 RNU6-945P-201ENST00000383947 107 ntBASIC0.4□□□□□ -2.35
MSH6P52701 RNA5SP222-201ENST00000411039 105 ntBASIC0.4□□□□□ -2.35
MSH6P52701 RNU6-130P-201ENST00000411112 103 ntBASIC0.4□□□□□ -2.35
MSH6P52701 POLR2KP2-201ENST00000438155 177 ntBASIC0.4□□□□□ -2.35
MSH6P52701 SCARNA8-201ENST00000515924 131 ntBASIC0.4□□□□□ -2.35
MSH6P52701 RNU6-875P-201ENST00000516488 106 ntBASIC0.4□□□□□ -2.35
MSH6P52701 AC005357.1-201ENST00000588399 301 ntBASIC0.4□□□□□ -2.35
MSH6P52701 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC0.4□□□□□ -2.35
MSH6P52701 AC015726.2-201ENST00000620112 122 ntBASIC0.4□□□□□ -2.35
MSH6P52701 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC0.39□□□□□ -2.35
MSH6P52701 RNU6-125P-201ENST00000384505 107 ntBASIC0.39□□□□□ -2.35
MSH6P52701 RNA5SP25-201ENST00000410815 110 ntBASIC0.39□□□□□ -2.35
MSH6P52701 RNU6-177P-201ENST00000411257 104 ntBASIC0.39□□□□□ -2.35
MSH6P52701 AC236972.2-201ENST00000434979 310 ntBASIC0.39□□□□□ -2.35
MSH6P52701 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC0.39□□□□□ -2.35
MSH6P52701 MIR5190-201ENST00000581537 80 ntBASIC0.39□□□□□ -2.35
MSH6P52701 PART1_1.1-201ENST00000611761 217 ntBASIC0.39□□□□□ -2.35
MSH6P52701 uc_338.4-201ENST00000616635 176 ntBASIC0.39□□□□□ -2.35
MSH6P52701 AC022140.2-201ENST00000623500 188 ntBASIC0.39□□□□□ -2.35
MSH6P52701 RNU6-934P-201ENST00000365154 107 ntBASIC0.38□□□□□ -2.35
MSH6P52701 RNU6-144P-201ENST00000383951 107 ntBASIC0.38□□□□□ -2.35
MSH6P52701 Y_RNA.529-201ENST00000384586 119 ntBASIC0.38□□□□□ -2.35
MSH6P52701 MTCO2P12-201ENST00000427426 682 ntBASIC0.38□□□□□ -2.35
MSH6P52701 snoU13.21-201ENST00000459368 105 ntBASIC0.38□□□□□ -2.35
MSH6P52701 RNU6-191P-201ENST00000516295 94 ntBASIC0.38□□□□□ -2.35
MSH6P52701 Z83818.1-201ENST00000603584 150 ntBASIC0.38□□□□□ -2.35
MSH6P52701 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.37□□□□□ -2.35
MSH6P52701 RNU6-899P-201ENST00000363947 107 ntBASIC0.37□□□□□ -2.35
MSH6P52701 Y_RNA.197-201ENST00000364004 102 ntBASIC0.37□□□□□ -2.35
MSH6P52701 Y_RNA.813-201ENST00000364639 102 ntBASIC0.37□□□□□ -2.35
MSH6P52701 Y_RNA.263-201ENST00000364659 114 ntBASIC0.37□□□□□ -2.35
MSH6P52701 Y_RNA.315-201ENST00000365117 102 ntBASIC0.37□□□□□ -2.35
MSH6P52701 SNORA36.2-201ENST00000384004 127 ntBASIC0.37□□□□□ -2.35
MSH6P52701 SNORA24-201ENST00000384096 131 ntBASIC0.37□□□□□ -2.35
MSH6P52701 Y_RNA.476-201ENST00000384347 108 ntBASIC0.37□□□□□ -2.35
MSH6P52701 Y_RNA.547-201ENST00000384654 119 ntBASIC0.37□□□□□ -2.35
MSH6P52701 MIR1302-11-201ENST00000408051 138 ntBASIC0.37□□□□□ -2.35
MSH6P52701 MIR1302-9-201ENST00000408365 138 ntBASIC0.37□□□□□ -2.35
MSH6P52701 MIR1302-10-201ENST00000408734 138 ntBASIC0.37□□□□□ -2.35
MSH6P52701 RNU6-1170P-201ENST00000515974 106 ntBASIC0.37□□□□□ -2.35
MSH6P52701 RNU6-475P-201ENST00000516073 104 ntBASIC0.37□□□□□ -2.35
MSH6P52701 RN7SKP12-201ENST00000516275 143 ntBASIC0.37□□□□□ -2.35
MSH6P52701 AC040926.1-201ENST00000530195 238 ntBASIC0.37□□□□□ -2.35
MSH6P52701 MIR4264-201ENST00000583520 66 ntBASIC0.37□□□□□ -2.35
MSH6P52701 AP000753.3-201ENST00000604083 169 ntBASIC0.37□□□□□ -2.35
MSH6P52701 MIR1302-2-201ENST00000607096 138 ntBASIC0.37□□□□□ -2.35
MSH6P52701 Y_RNA.418-201ENST00000384029 102 ntBASIC0.36□□□□□ -2.35
MSH6P52701 Y_RNA.494-201ENST00000384432 111 ntBASIC0.36□□□□□ -2.35
MSH6P52701 MIR573-201ENST00000384964 99 ntBASIC0.36□□□□□ -2.35
MSH6P52701 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC0.36□□□□□ -2.35
MSH6P52701 snoU13.16-201ENST00000459350 104 ntBASIC0.36□□□□□ -2.35
MSH6P52701 RNU6-764P-201ENST00000516396 105 ntBASIC0.36□□□□□ -2.35
MSH6P52701 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.36□□□□□ -2.35
MSH6P52701 LARP7P1-201ENST00000605576 316 ntBASIC0.36□□□□□ -2.35
MSH6P52701 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.36□□□□□ -2.35
MSH6P52701 AC006157.1-201ENST00000611750 366 ntBASIC0.36□□□□□ -2.35
MSH6P52701 Y_RNA.136-201ENST00000363444 102 ntBASIC0.35□□□□□ -2.35
MSH6P52701 RNY1P8-201ENST00000383970 114 ntBASIC0.35□□□□□ -2.35
MSH6P52701 RNU6-205P-201ENST00000390858 107 ntBASIC0.35□□□□□ -2.35
MSH6P52701 AC107297.1-201ENST00000459991 176 ntBASIC0.35□□□□□ -2.35
MSH6P52701 RNU6-977P-201ENST00000516411 103 ntBASIC0.35□□□□□ -2.35
MSH6P52701 MIR4305-201ENST00000583252 102 ntBASIC0.35□□□□□ -2.35
MSH6P52701 Y_RNA.58-201ENST00000362807 102 ntBASIC0.34□□□□□ -2.35
Retrieved 100 of 98,524 protein–RNA pairs in 234.5 ms