Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 MIR802-201ENST00000390235 94 ntBASIC1.92□□□□□ -2.1
SMARCA1P28370 MIR934-201ENST00000401241 83 ntBASIC1.92□□□□□ -2.1
SMARCA1P28370 SNORA79-201ENST00000408376 140 ntBASIC1.92□□□□□ -2.1
SMARCA1P28370 MIR1287-201ENST00000408492 90 ntBASIC1.92□□□□□ -2.1
SMARCA1P28370 HMGN2P32-201ENST00000444648 269 ntBASIC1.92□□□□□ -2.1
SMARCA1P28370 RNU6-1212P-201ENST00000517023 104 ntBASIC1.92□□□□□ -2.1
SMARCA1P28370 SUMO2P16-201ENST00000519475 264 ntBASIC1.92□□□□□ -2.1
SMARCA1P28370 Y_RNA.8-201ENST00000362353 102 ntBASIC1.91□□□□□ -2.1
SMARCA1P28370 RNU6-457P-201ENST00000363999 107 ntBASIC1.91□□□□□ -2.1
SMARCA1P28370 Y_RNA.226-201ENST00000364337 114 ntBASIC1.91□□□□□ -2.1
SMARCA1P28370 RNU6-978P-201ENST00000364371 103 ntBASIC1.91□□□□□ -2.1
SMARCA1P28370 Y_RNA.398-201ENST00000383952 99 ntBASIC1.91□□□□□ -2.1
SMARCA1P28370 Y_RNA.580-201ENST00000391004 95 ntBASIC1.91□□□□□ -2.1
SMARCA1P28370 SNORA67.5-201ENST00000391036 107 ntBASIC1.91□□□□□ -2.1
SMARCA1P28370 snoU13.9-201ENST00000458927 103 ntBASIC1.91□□□□□ -2.1
SMARCA1P28370 AC107027.2-201ENST00000512197 115 ntBASIC1.91□□□□□ -2.1
SMARCA1P28370 RNU6-126P-201ENST00000516685 103 ntBASIC1.91□□□□□ -2.1
SMARCA1P28370 MTND5P41-201ENST00000517498 206 ntBASIC1.91□□□□□ -2.1
SMARCA1P28370 AC007751.1-201ENST00000529260 376 ntBASIC1.91□□□□□ -2.1
SMARCA1P28370 MIR8081-201ENST00000611533 95 ntBASIC1.91□□□□□ -2.1
SMARCA1P28370 Y_RNA.242-201ENST00000364473 110 ntBASIC1.9□□□□□ -2.11
SMARCA1P28370 RNU6-818P-201ENST00000364837 108 ntBASIC1.9□□□□□ -2.11
SMARCA1P28370 RNA5SP190-201ENST00000365222 118 ntBASIC1.9□□□□□ -2.11
SMARCA1P28370 SNORD24-201ENST00000383884 75 ntBASIC1.9□□□□□ -2.11
SMARCA1P28370 SNORA26-201ENST00000391286 122 ntBASIC1.9□□□□□ -2.11
SMARCA1P28370 SNRPGP13-201ENST00000442212 177 ntBASIC1.9□□□□□ -2.11
SMARCA1P28370 RNU6-504P-201ENST00000516568 104 ntBASIC1.9□□□□□ -2.11
SMARCA1P28370 AC090142.3-201ENST00000519012 385 ntBASIC1.9□□□□□ -2.11
SMARCA1P28370 AL442644.1-201ENST00000454390 3105 ntBASIC1.89□□□□□ -2.11
SMARCA1P28370 MIR337-201ENST00000362281 93 ntBASIC1.89□□□□□ -2.11
SMARCA1P28370 RNU6-768P-201ENST00000384683 107 ntBASIC1.89□□□□□ -2.11
SMARCA1P28370 MIR526A1-201ENST00000384897 85 ntBASIC1.89□□□□□ -2.11
SMARCA1P28370 MIR548A2-201ENST00000384956 97 ntBASIC1.89□□□□□ -2.11
SMARCA1P28370 AC015922.2-201ENST00000435593 184 ntBASIC1.89□□□□□ -2.11
SMARCA1P28370 RNU6-693P-201ENST00000516134 107 ntBASIC1.89□□□□□ -2.11
SMARCA1P28370 RNU6-1270P-201ENST00000517128 108 ntBASIC1.89□□□□□ -2.11
SMARCA1P28370 AP000942.3-201ENST00000603702 160 ntBASIC1.89□□□□□ -2.11
SMARCA1P28370 MIR3658-201ENST00000636291 56 ntBASIC1.89□□□□□ -2.11
SMARCA1P28370 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.88□□□□□ -2.11
SMARCA1P28370 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC1.88□□□□□ -2.11
SMARCA1P28370 RNU6-888P-201ENST00000363010 101 ntBASIC1.88□□□□□ -2.11
SMARCA1P28370 Y_RNA.170-201ENST00000363746 110 ntBASIC1.88□□□□□ -2.11
SMARCA1P28370 Y_RNA.337-201ENST00000365312 102 ntBASIC1.88□□□□□ -2.11
SMARCA1P28370 SNORA1-201ENST00000384107 130 ntBASIC1.88□□□□□ -2.11
SMARCA1P28370 Y_RNA.521-201ENST00000384560 114 ntBASIC1.88□□□□□ -2.11
SMARCA1P28370 Y_RNA.547-201ENST00000384654 119 ntBASIC1.88□□□□□ -2.11
SMARCA1P28370 MIR518F-201ENST00000384973 87 ntBASIC1.88□□□□□ -2.11
SMARCA1P28370 AC005908.1-201ENST00000468701 347 ntBASIC1.88□□□□□ -2.11
SMARCA1P28370 RNU7-25P-201ENST00000516544 62 ntBASIC1.88□□□□□ -2.11
SMARCA1P28370 AC015688.6-201ENST00000577737 104 ntBASIC1.88□□□□□ -2.11
SMARCA1P28370 MIR4285-201ENST00000581001 85 ntBASIC1.88□□□□□ -2.11
SMARCA1P28370 AC106754.2-201ENST00000623006 233 ntBASIC1.88□□□□□ -2.11
SMARCA1P28370 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC1.87□□□□□ -2.11
SMARCA1P28370 RNU6-199P-201ENST00000362954 107 ntBASIC1.87□□□□□ -2.11
SMARCA1P28370 RNU6-1336P-201ENST00000383886 109 ntBASIC1.87□□□□□ -2.11
SMARCA1P28370 RNU6-449P-201ENST00000383914 107 ntBASIC1.87□□□□□ -2.11
SMARCA1P28370 MIR516B2-201ENST00000385190 85 ntBASIC1.87□□□□□ -2.11
SMARCA1P28370 MIR548O-201ENST00000408583 114 ntBASIC1.87□□□□□ -2.11
SMARCA1P28370 SNORD116-25-201ENST00000516517 92 ntBASIC1.87□□□□□ -2.11
SMARCA1P28370 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.87□□□□□ -2.11
SMARCA1P28370 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.87□□□□□ -2.11
SMARCA1P28370 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.86□□□□□ -2.11
SMARCA1P28370 Y_RNA.393-201ENST00000383936 102 ntBASIC1.86□□□□□ -2.11
SMARCA1P28370 SNORD116-18-201ENST00000383961 92 ntBASIC1.86□□□□□ -2.11
SMARCA1P28370 SNORD38C-201ENST00000384381 69 ntBASIC1.86□□□□□ -2.11
SMARCA1P28370 MIR452-201ENST00000385020 85 ntBASIC1.86□□□□□ -2.11
SMARCA1P28370 RNU6-917P-201ENST00000516294 104 ntBASIC1.86□□□□□ -2.11
SMARCA1P28370 RNU6-830P-201ENST00000516353 107 ntBASIC1.86□□□□□ -2.11
SMARCA1P28370 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC1.86□□□□□ -2.11
SMARCA1P28370 MIR4781-201ENST00000585250 76 ntBASIC1.86□□□□□ -2.11
SMARCA1P28370 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC1.86□□□□□ -2.11
SMARCA1P28370 DNAJC19P2-201ENST00000593340 302 ntBASIC1.86□□□□□ -2.11
SMARCA1P28370 RNU6-597P-201ENST00000365620 102 ntBASIC1.85□□□□□ -2.11
SMARCA1P28370 MIR513A1-201ENST00000385138 129 ntBASIC1.85□□□□□ -2.11
SMARCA1P28370 HSPE1P24-201ENST00000450782 238 ntBASIC1.85□□□□□ -2.11
SMARCA1P28370 SNORD13-201ENST00000459299 104 ntBASIC1.85□□□□□ -2.11
SMARCA1P28370 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC1.85□□□□□ -2.11
SMARCA1P28370 AC015726.2-201ENST00000620112 122 ntBASIC1.85□□□□□ -2.11
SMARCA1P28370 RNU6-1082P-201ENST00000364574 107 ntBASIC1.84□□□□□ -2.11
SMARCA1P28370 RNA5SP259-201ENST00000365541 109 ntBASIC1.84□□□□□ -2.11
SMARCA1P28370 Y_RNA.506-201ENST00000384494 102 ntBASIC1.84□□□□□ -2.11
SMARCA1P28370 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC1.84□□□□□ -2.11
SMARCA1P28370 RNU1-78P-201ENST00000391248 165 ntBASIC1.84□□□□□ -2.11
SMARCA1P28370 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC1.84□□□□□ -2.11
SMARCA1P28370 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC1.84□□□□□ -2.11
SMARCA1P28370 AF228730.3-201ENST00000436691 102 ntBASIC1.84□□□□□ -2.11
SMARCA1P28370 RNU7-200P-201ENST00000516105 62 ntBASIC1.84□□□□□ -2.11
SMARCA1P28370 MIR4422-201ENST00000581938 83 ntBASIC1.84□□□□□ -2.11
SMARCA1P28370 Y_RNA.778-201ENST00000620203 90 ntBASIC1.84□□□□□ -2.11
SMARCA1P28370 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.84□□□□□ -2.12
SMARCA1P28370 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.83□□□□□ -2.12
SMARCA1P28370 MIR302D-201ENST00000362275 68 ntBASIC1.83□□□□□ -2.12
SMARCA1P28370 RNY1P11-201ENST00000363759 113 ntBASIC1.83□□□□□ -2.12
SMARCA1P28370 RNU6-151P-201ENST00000364158 107 ntBASIC1.83□□□□□ -2.12
SMARCA1P28370 MIR136-201ENST00000385207 82 ntBASIC1.83□□□□□ -2.12
SMARCA1P28370 RNU6-938P-201ENST00000411285 103 ntBASIC1.83□□□□□ -2.12
SMARCA1P28370 AC092991.1-201ENST00000477176 376 ntBASIC1.83□□□□□ -2.12
SMARCA1P28370 RNU4-57P-201ENST00000515980 135 ntBASIC1.83□□□□□ -2.12
SMARCA1P28370 MIR4498-201ENST00000577599 66 ntBASIC1.83□□□□□ -2.12
SMARCA1P28370 MIR3129-201ENST00000581095 76 ntBASIC1.83□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 594.4 ms