Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 SNORD115-1-201ENST00000364961 82 ntBASIC-2.26□□□□□ -2.77
CCDC88BA6NC98 SNORD115-26-201ENST00000365067 82 ntBASIC-2.26□□□□□ -2.77
CCDC88BA6NC98 SNORD115-10-201ENST00000365073 81 ntBASIC-2.26□□□□□ -2.77
CCDC88BA6NC98 SNORD115-43-201ENST00000365503 82 ntBASIC-2.26□□□□□ -2.77
CCDC88BA6NC98 SNORD115-36-201ENST00000365629 82 ntBASIC-2.26□□□□□ -2.77
CCDC88BA6NC98 RNU6-540P-201ENST00000384622 101 ntBASIC-2.26□□□□□ -2.77
CCDC88BA6NC98 RNU6-298P-201ENST00000390888 96 ntBASIC-2.26□□□□□ -2.77
CCDC88BA6NC98 RNU6-1190P-201ENST00000410811 104 ntBASIC-2.26□□□□□ -2.77
CCDC88BA6NC98 RNU6-732P-201ENST00000516033 103 ntBASIC-2.26□□□□□ -2.77
CCDC88BA6NC98 AC022166.2-201ENST00000566030 536 ntTSL 4 BASIC-2.26□□□□□ -2.77
CCDC88BA6NC98 AC141846.1-201ENST00000568348 142 ntBASIC-2.26□□□□□ -2.77
CCDC88BA6NC98 MIR3920-201ENST00000581751 86 ntBASIC-2.26□□□□□ -2.77
CCDC88BA6NC98 SNORD115-40-201ENST00000606510 82 ntBASIC-2.26□□□□□ -2.77
CCDC88BA6NC98 RNU4-75P-201ENST00000364621 146 ntBASIC-2.26□□□□□ -2.77
CCDC88BA6NC98 MTND2P18-201ENST00000419962 1030 ntBASIC-2.26□□□□□ -2.77
CCDC88BA6NC98 AC098614.3-201ENST00000438957 440 ntBASIC-2.26□□□□□ -2.77
CCDC88BA6NC98 AL353813.1-201ENST00000440700 253 ntBASIC-2.26□□□□□ -2.77
CCDC88BA6NC98 MTCO1P29-201ENST00000496868 288 ntBASIC-2.26□□□□□ -2.77
CCDC88BA6NC98 RNU6-966P-201ENST00000516479 104 ntBASIC-2.26□□□□□ -2.77
CCDC88BA6NC98 RNU6-759P-201ENST00000516740 103 ntBASIC-2.26□□□□□ -2.77
CCDC88BA6NC98 AC080013.3-201ENST00000606839 578 ntBASIC-2.26□□□□□ -2.77
CCDC88BA6NC98 RNU6-949P-201ENST00000384040 107 ntBASIC-2.27□□□□□ -2.77
CCDC88BA6NC98 AC018714.1-201ENST00000605028 208 ntBASIC-2.27□□□□□ -2.77
CCDC88BA6NC98 AC008536.2-201ENST00000607284 349 ntBASIC-2.27□□□□□ -2.77
CCDC88BA6NC98 AC079248.2-201ENST00000623779 326 ntBASIC-2.27□□□□□ -2.77
CCDC88BA6NC98 SNORD114-7-201ENST00000362520 77 ntBASIC-2.28□□□□□ -2.77
CCDC88BA6NC98 SNORA40.2-201ENST00000390847 128 ntBASIC-2.28□□□□□ -2.77
CCDC88BA6NC98 RNU6-159P-201ENST00000391080 106 ntBASIC-2.28□□□□□ -2.77
CCDC88BA6NC98 AC104576.1-201ENST00000524225 88 ntBASIC-2.28□□□□□ -2.77
CCDC88BA6NC98 AP005120.1-201ENST00000579321 352 ntTSL 3 BASIC-2.28□□□□□ -2.77
CCDC88BA6NC98 TUSC7.1-201ENST00000610969 165 ntBASIC-2.28□□□□□ -2.77
CCDC88BA6NC98 JPX_2.1-201ENST00000614161 69 ntBASIC-2.28□□□□□ -2.77
CCDC88BA6NC98 AL391262.2-201ENST00000622466 494 ntBASIC-2.28□□□□□ -2.77
CCDC88BA6NC98 Y_RNA.220-201ENST00000364244 109 ntBASIC-2.29□□□□□ -2.78
CCDC88BA6NC98 RNU6-1201P-201ENST00000384227 107 ntBASIC-2.29□□□□□ -2.78
CCDC88BA6NC98 MIR29B1-201ENST00000385015 81 ntBASIC-2.29□□□□□ -2.78
CCDC88BA6NC98 AL606845.1-201ENST00000404881 255 ntBASIC-2.29□□□□□ -2.78
CCDC88BA6NC98 RNU4-61P-201ENST00000411243 107 ntBASIC-2.29□□□□□ -2.78
CCDC88BA6NC98 Z82188.1-201ENST00000436709 154 ntBASIC-2.29□□□□□ -2.78
CCDC88BA6NC98 AC244090.1-201ENST00000441884 93 ntBASIC-2.29□□□□□ -2.78
CCDC88BA6NC98 AC027807.2-201ENST00000616099 408 ntBASIC-2.29□□□□□ -2.78
CCDC88BA6NC98 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC-2.29□□□□□ -2.78
CCDC88BA6NC98 RNU4-92P-201ENST00000363783 136 ntBASIC-2.3□□□□□ -2.78
CCDC88BA6NC98 Y_RNA.247-201ENST00000364500 92 ntBASIC-2.3□□□□□ -2.78
CCDC88BA6NC98 Y_RNA.361-201ENST00000365515 120 ntBASIC-2.3□□□□□ -2.78
CCDC88BA6NC98 RNU6-597P-201ENST00000365620 102 ntBASIC-2.3□□□□□ -2.78
CCDC88BA6NC98 Y_RNA.407-201ENST00000383986 113 ntBASIC-2.3□□□□□ -2.78
CCDC88BA6NC98 Y_RNA.578-201ENST00000390903 88 ntBASIC-2.3□□□□□ -2.78
CCDC88BA6NC98 RNU6-588P-201ENST00000410281 105 ntBASIC-2.3□□□□□ -2.78
CCDC88BA6NC98 RPS27AP14-201ENST00000422868 454 ntBASIC-2.3□□□□□ -2.78
CCDC88BA6NC98 MTCO2P29-201ENST00000465212 189 ntBASIC-2.3□□□□□ -2.78
CCDC88BA6NC98 AC005828.6-201ENST00000606610 232 ntBASIC-2.3□□□□□ -2.78
CCDC88BA6NC98 RNU4-1-201ENST00000363925 141 ntBASIC-2.31□□□□□ -2.78
CCDC88BA6NC98 Y_RNA.223-201ENST00000364290 113 ntBASIC-2.31□□□□□ -2.78
CCDC88BA6NC98 Y_RNA.323-201ENST00000365157 109 ntBASIC-2.31□□□□□ -2.78
CCDC88BA6NC98 MIR521-1-201ENST00000384902 87 ntBASIC-2.31□□□□□ -2.78
CCDC88BA6NC98 MRPL42P2-201ENST00000403169 426 ntBASIC-2.31□□□□□ -2.78
CCDC88BA6NC98 RNA5SP272-201ENST00000516095 111 ntBASIC-2.31□□□□□ -2.78
CCDC88BA6NC98 Y_RNA.683-201ENST00000516508 93 ntBASIC-2.31□□□□□ -2.78
CCDC88BA6NC98 AC145423.2-201ENST00000610631 239 ntBASIC-2.31□□□□□ -2.78
CCDC88BA6NC98 AC007671.2-201ENST00000637344 619 ntBASIC-2.31□□□□□ -2.78
CCDC88BA6NC98 Y_RNA.204-201ENST00000364112 102 ntBASIC-2.32□□□□□ -2.78
CCDC88BA6NC98 Y_RNA.214-201ENST00000364201 112 ntBASIC-2.32□□□□□ -2.78
CCDC88BA6NC98 RNU6-1138P-201ENST00000365359 106 ntBASIC-2.32□□□□□ -2.78
CCDC88BA6NC98 RNU6-484P-201ENST00000384016 107 ntBASIC-2.32□□□□□ -2.78
CCDC88BA6NC98 SNORA72-201ENST00000384339 132 ntBASIC-2.32□□□□□ -2.78
CCDC88BA6NC98 MIR124-2-201ENST00000385081 109 ntBASIC-2.32□□□□□ -2.78
CCDC88BA6NC98 SNORA40.5-201ENST00000391061 128 ntBASIC-2.32□□□□□ -2.78
CCDC88BA6NC98 AC055872.1-201ENST00000570978 278 ntBASIC-2.32□□□□□ -2.78
CCDC88BA6NC98 MIR4460-201ENST00000577862 86 ntBASIC-2.32□□□□□ -2.78
CCDC88BA6NC98 MIR6818-201ENST00000621576 65 ntBASIC-2.32□□□□□ -2.78
CCDC88BA6NC98 RNU6-433P-201ENST00000363216 104 ntBASIC-2.33□□□□□ -2.78
CCDC88BA6NC98 RNY1P12-201ENST00000364251 105 ntBASIC-2.33□□□□□ -2.78
CCDC88BA6NC98 RNU6-1264P-201ENST00000383891 107 ntBASIC-2.33□□□□□ -2.78
CCDC88BA6NC98 Y_RNA.465-201ENST00000384293 102 ntBASIC-2.33□□□□□ -2.78
CCDC88BA6NC98 MTATP6P15-201ENST00000527233 835 ntBASIC-2.33□□□□□ -2.78
CCDC88BA6NC98 AC022441.3-201ENST00000605737 136 ntBASIC-2.33□□□□□ -2.78
CCDC88BA6NC98 AC064836.2-201ENST00000609491 462 ntBASIC-2.33□□□□□ -2.78
CCDC88BA6NC98 Y_RNA.7-201ENST00000362352 102 ntBASIC-2.33□□□□□ -2.78
CCDC88BA6NC98 RNU6-454P-201ENST00000364292 107 ntBASIC-2.33□□□□□ -2.78
CCDC88BA6NC98 Y_RNA.244-201ENST00000364484 109 ntBASIC-2.33□□□□□ -2.78
CCDC88BA6NC98 RNU6-476P-201ENST00000384726 107 ntBASIC-2.33□□□□□ -2.78
CCDC88BA6NC98 snoR1.1-201ENST00000628177 80 ntBASIC-2.33□□□□□ -2.78
CCDC88BA6NC98 RNA5SP133-201ENST00000363368 119 ntBASIC-2.34□□□□□ -2.78
CCDC88BA6NC98 Y_RNA.225-201ENST00000364326 97 ntBASIC-2.34□□□□□ -2.78
CCDC88BA6NC98 Y_RNA.430-201ENST00000384081 110 ntBASIC-2.34□□□□□ -2.78
CCDC88BA6NC98 MIR599-201ENST00000385069 95 ntBASIC-2.34□□□□□ -2.78
CCDC88BA6NC98 RNA5SP86-201ENST00000390869 98 ntBASIC-2.34□□□□□ -2.78
CCDC88BA6NC98 SNORD72-201ENST00000390994 80 ntBASIC-2.34□□□□□ -2.78
CCDC88BA6NC98 RNU6-1203P-201ENST00000410703 110 ntBASIC-2.34□□□□□ -2.78
CCDC88BA6NC98 BIRC6-AS1-201ENST00000455572 697 ntTSL 3 BASIC-2.34□□□□□ -2.78
CCDC88BA6NC98 RNU7-13P-201ENST00000516413 62 ntBASIC-2.34□□□□□ -2.78
CCDC88BA6NC98 RNU7-25P-201ENST00000516544 62 ntBASIC-2.34□□□□□ -2.78
CCDC88BA6NC98 MTND4LP18-201ENST00000526864 291 ntBASIC-2.34□□□□□ -2.78
CCDC88BA6NC98 AP003181.2-201ENST00000528941 181 ntBASIC-2.34□□□□□ -2.78
CCDC88BA6NC98 MIR548H5-201ENST00000580314 60 ntBASIC-2.34□□□□□ -2.78
CCDC88BA6NC98 Y_RNA.172-201ENST00000363765 102 ntBASIC-2.35□□□□□ -2.79
CCDC88BA6NC98 Y_RNA.243-201ENST00000364481 109 ntBASIC-2.35□□□□□ -2.79
CCDC88BA6NC98 SNORA27-201ENST00000384323 126 ntBASIC-2.35□□□□□ -2.79
CCDC88BA6NC98 SNORD77.3-201ENST00000391113 65 ntBASIC-2.35□□□□□ -2.79
Retrieved 100 of 98,524 protein–RNA pairs in 228.3 ms