Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 Y_RNA.512-201ENST00000384518 102 ntBASIC1.03□□□□□ -2.24
LIME1Q9H400 MIR222-201ENST00000384992 110 ntBASIC1.03□□□□□ -2.24
LIME1Q9H400 MIR136-201ENST00000385207 82 ntBASIC1.03□□□□□ -2.24
LIME1Q9H400 AL603910.2-201ENST00000407268 136 ntBASIC1.03□□□□□ -2.24
LIME1Q9H400 MIR1278-201ENST00000408753 81 ntBASIC1.03□□□□□ -2.24
LIME1Q9H400 BTF3P11-201ENST00000426582 477 ntBASIC1.03□□□□□ -2.24
LIME1Q9H400 AC245047.7-201ENST00000440265 293 ntBASIC1.03□□□□□ -2.24
LIME1Q9H400 SNORD2.1-201ENST00000458762 69 ntBASIC1.03□□□□□ -2.24
LIME1Q9H400 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC1.03□□□□□ -2.24
LIME1Q9H400 RPL23AP91-201ENST00000569211 455 ntBASIC1.03□□□□□ -2.24
LIME1Q9H400 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC1.03□□□□□ -2.24
LIME1Q9H400 AL096861.1-201ENST00000610899 123 ntBASIC1.03□□□□□ -2.24
LIME1Q9H400 RNA5SP327-201ENST00000362494 101 ntBASIC1.02□□□□□ -2.25
LIME1Q9H400 SNORD14E-201ENST00000364009 85 ntBASIC1.02□□□□□ -2.25
LIME1Q9H400 Y_RNA.237-201ENST00000364439 102 ntBASIC1.02□□□□□ -2.25
LIME1Q9H400 RNU6-442P-201ENST00000383968 104 ntBASIC1.02□□□□□ -2.25
LIME1Q9H400 MIR516B2-201ENST00000385190 85 ntBASIC1.02□□□□□ -2.25
LIME1Q9H400 MT-TW-201ENST00000387382 68 ntBASIC1.02□□□□□ -2.25
LIME1Q9H400 MIR526A2-201ENST00000390198 65 ntBASIC1.02□□□□□ -2.25
LIME1Q9H400 AL358176.2-201ENST00000425769 204 ntBASIC1.02□□□□□ -2.25
LIME1Q9H400 snoU13.25-201ENST00000458945 104 ntBASIC1.02□□□□□ -2.25
LIME1Q9H400 RNU6-830P-201ENST00000516353 107 ntBASIC1.02□□□□□ -2.25
LIME1Q9H400 SNORA74.3-201ENST00000517108 154 ntBASIC1.02□□□□□ -2.25
LIME1Q9H400 DEFB108E-201ENST00000524692 240 ntBASIC1.02□□□□□ -2.25
LIME1Q9H400 AC019288.1-201ENST00000557918 224 ntBASIC1.02□□□□□ -2.25
LIME1Q9H400 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC1.01□□□□□ -2.25
LIME1Q9H400 Y_RNA.44-201ENST00000362676 108 ntBASIC1.01□□□□□ -2.25
LIME1Q9H400 Y_RNA.82-201ENST00000363000 102 ntBASIC1.01□□□□□ -2.25
LIME1Q9H400 Y_RNA.92-201ENST00000363043 102 ntBASIC1.01□□□□□ -2.25
LIME1Q9H400 Y_RNA.235-201ENST00000364412 102 ntBASIC1.01□□□□□ -2.25
LIME1Q9H400 Y_RNA.306-201ENST00000365015 102 ntBASIC1.01□□□□□ -2.25
LIME1Q9H400 Y_RNA.312-201ENST00000365089 102 ntBASIC1.01□□□□□ -2.25
LIME1Q9H400 Y_RNA.322-201ENST00000365151 102 ntBASIC1.01□□□□□ -2.25
LIME1Q9H400 Y_RNA.483-201ENST00000384380 101 ntBASIC1.01□□□□□ -2.25
LIME1Q9H400 RNA5SP496-201ENST00000391240 109 ntBASIC1.01□□□□□ -2.25
LIME1Q9H400 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC1.01□□□□□ -2.25
LIME1Q9H400 AC245047.8-201ENST00000456455 284 ntBASIC1.01□□□□□ -2.25
LIME1Q9H400 Y_RNA.650-201ENST00000459002 102 ntBASIC1.01□□□□□ -2.25
LIME1Q9H400 AC087343.1-201ENST00000477341 475 ntBASIC1.01□□□□□ -2.25
LIME1Q9H400 SNORA31.2-201ENST00000516019 134 ntBASIC1.01□□□□□ -2.25
LIME1Q9H400 Y_RNA.777-201ENST00000516982 102 ntBASIC1.01□□□□□ -2.25
LIME1Q9H400 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC1.01□□□□□ -2.25
LIME1Q9H400 MIR5688-201ENST00000580619 83 ntBASIC1.01□□□□□ -2.25
LIME1Q9H400 MIR4295-201ENST00000585286 85 ntBASIC1.01□□□□□ -2.25
LIME1Q9H400 Y_RNA.771-201ENST00000598668 102 ntBASIC1.01□□□□□ -2.25
LIME1Q9H400 AL391903.3-201ENST00000612158 163 ntBASIC1.01□□□□□ -2.25
LIME1Q9H400 AC006441.5-201ENST00000612680 209 ntBASIC1.01□□□□□ -2.25
LIME1Q9H400 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC1.01□□□□□ -2.25
LIME1Q9H400 Y_RNA.789-201ENST00000622480 102 ntBASIC1.01□□□□□ -2.25
LIME1Q9H400 AC027335.2-201ENST00000624030 375 ntBASIC1.01□□□□□ -2.25
LIME1Q9H400 snoU18.1-201ENST00000629629 71 ntBASIC1.01□□□□□ -2.25
LIME1Q9H400 RNU6-268P-201ENST00000364174 107 ntBASIC1□□□□□ -2.25
LIME1Q9H400 Y_RNA.242-201ENST00000364473 110 ntBASIC1□□□□□ -2.25
LIME1Q9H400 Y_RNA.461-201ENST00000384263 103 ntBASIC1□□□□□ -2.25
LIME1Q9H400 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1□□□□□ -2.25
LIME1Q9H400 SNORD72-201ENST00000390994 80 ntBASIC1□□□□□ -2.25
LIME1Q9H400 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC1□□□□□ -2.25
LIME1Q9H400 RPL39P39-201ENST00000455840 151 ntBASIC1□□□□□ -2.25
LIME1Q9H400 AC048334.1-201ENST00000477975 159 ntBASIC1□□□□□ -2.25
LIME1Q9H400 RPS23P4-201ENST00000487908 423 ntBASIC1□□□□□ -2.25
LIME1Q9H400 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC1□□□□□ -2.25
LIME1Q9H400 SNORA31.4-201ENST00000516049 129 ntBASIC1□□□□□ -2.25
LIME1Q9H400 SNORD116-28-201ENST00000516123 91 ntBASIC1□□□□□ -2.25
LIME1Q9H400 RN7SKP179-201ENST00000516126 217 ntBASIC1□□□□□ -2.25
LIME1Q9H400 RNU6-113P-201ENST00000516653 101 ntBASIC1□□□□□ -2.25
LIME1Q9H400 SCARNA24.2-201ENST00000516968 130 ntBASIC1□□□□□ -2.25
LIME1Q9H400 AP003716.2-201ENST00000528260 108 ntBASIC1□□□□□ -2.25
LIME1Q9H400 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC1□□□□□ -2.25
LIME1Q9H400 AC008737.2-201ENST00000599446 118 ntBASIC1□□□□□ -2.25
LIME1Q9H400 AL360085.1-201ENST00000604713 532 ntBASIC1□□□□□ -2.25
LIME1Q9H400 AL022345.2-201ENST00000606307 135 ntBASIC1□□□□□ -2.25
LIME1Q9H400 SNORA25.8-201ENST00000364831 128 ntBASIC0.99□□□□□ -2.25
LIME1Q9H400 RNU6-1138P-201ENST00000365359 106 ntBASIC0.99□□□□□ -2.25
LIME1Q9H400 Y_RNA.393-201ENST00000383936 102 ntBASIC0.99□□□□□ -2.25
LIME1Q9H400 RNU6-211P-201ENST00000384047 107 ntBASIC0.99□□□□□ -2.25
LIME1Q9H400 SNORA25-201ENST00000384384 134 ntBASIC0.99□□□□□ -2.25
LIME1Q9H400 RNU6-1289P-201ENST00000384431 106 ntBASIC0.99□□□□□ -2.25
LIME1Q9H400 RNU6-939P-201ENST00000384634 107 ntBASIC0.99□□□□□ -2.25
LIME1Q9H400 RNU6-383P-201ENST00000410864 94 ntBASIC0.99□□□□□ -2.25
LIME1Q9H400 SNORD123-201ENST00000459473 70 ntBASIC0.99□□□□□ -2.25
LIME1Q9H400 AL133373.1-201ENST00000497098 94 ntBASIC0.99□□□□□ -2.25
LIME1Q9H400 SCARNA15.1-201ENST00000516384 125 ntBASIC0.99□□□□□ -2.25
LIME1Q9H400 RNU7-43P-201ENST00000516554 64 ntBASIC0.99□□□□□ -2.25
LIME1Q9H400 RNU6-1007P-201ENST00000516586 107 ntBASIC0.99□□□□□ -2.25
LIME1Q9H400 AC100767.1-201ENST00000528178 123 ntBASIC0.99□□□□□ -2.25
LIME1Q9H400 MIR3192-201ENST00000584920 77 ntBASIC0.99□□□□□ -2.25
LIME1Q9H400 U6.104-201ENST00000637979 90 ntBASIC0.99□□□□□ -2.25
LIME1Q9H400 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC0.99□□□□□ -2.25
LIME1Q9H400 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC0.99□□□□□ -2.25
LIME1Q9H400 MIR367-201ENST00000362299 68 ntBASIC0.98□□□□□ -2.25
LIME1Q9H400 Y_RNA.133-201ENST00000363428 110 ntBASIC0.98□□□□□ -2.25
LIME1Q9H400 Y_RNA.176-201ENST00000363815 109 ntBASIC0.98□□□□□ -2.25
LIME1Q9H400 RNU6-740P-201ENST00000364734 105 ntBASIC0.98□□□□□ -2.25
LIME1Q9H400 Y_RNA.363-201ENST00000365529 113 ntBASIC0.98□□□□□ -2.25
LIME1Q9H400 Y_RNA.374-201ENST00000365606 101 ntBASIC0.98□□□□□ -2.25
LIME1Q9H400 SNORD38C-201ENST00000384381 69 ntBASIC0.98□□□□□ -2.25
LIME1Q9H400 SNORD12-201ENST00000391002 90 ntBASIC0.98□□□□□ -2.25
LIME1Q9H400 POLR2J4-204ENST00000418424 324 ntBASIC0.98□□□□□ -2.25
LIME1Q9H400 MTCO2P24-201ENST00000515611 426 ntBASIC0.98□□□□□ -2.25
LIME1Q9H400 SNORD77.4-201ENST00000516158 81 ntBASIC0.98□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 202.7 ms