Protein–RNA interactions for Protein: Q9H1E3

NUCKS1, Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1, humanhuman

Known RBP Predictions only

Length 243 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUCKS1Q9H1E3 MIR422A-201ENST00000362286 90 ntBASIC3.2□□□□□ -1.9
NUCKS1Q9H1E3 Y_RNA.377-201ENST00000365644 108 ntBASIC3.2□□□□□ -1.9
NUCKS1Q9H1E3 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC3.2□□□□□ -1.9
NUCKS1Q9H1E3 MIR515-2-201ENST00000384883 83 ntBASIC3.2□□□□□ -1.9
NUCKS1Q9H1E3 MIR515-1-201ENST00000384884 83 ntBASIC3.2□□□□□ -1.9
NUCKS1Q9H1E3 MIR592-201ENST00000384959 97 ntBASIC3.2□□□□□ -1.9
NUCKS1Q9H1E3 POLR2J4-204ENST00000418424 324 ntBASIC3.2□□□□□ -1.9
NUCKS1Q9H1E3 ATP5J2P3-201ENST00000451550 258 ntBASIC3.2□□□□□ -1.9
NUCKS1Q9H1E3 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC3.2□□□□□ -1.9
NUCKS1Q9H1E3 RNU6-998P-201ENST00000515894 101 ntBASIC3.2□□□□□ -1.9
NUCKS1Q9H1E3 Y_RNA.705-201ENST00000516862 110 ntBASIC3.2□□□□□ -1.9
NUCKS1Q9H1E3 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC3.2□□□□□ -1.9
NUCKS1Q9H1E3 AL162274.2-201ENST00000614406 332 ntBASIC3.2□□□□□ -1.9
NUCKS1Q9H1E3 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC3.19□□□□□ -1.9
NUCKS1Q9H1E3 SNORD114-6-201ENST00000364393 72 ntBASIC3.19□□□□□ -1.9
NUCKS1Q9H1E3 Y_RNA.467-201ENST00000384297 102 ntBASIC3.19□□□□□ -1.9
NUCKS1Q9H1E3 RNA5SP482-201ENST00000391269 118 ntBASIC3.19□□□□□ -1.9
NUCKS1Q9H1E3 RNU6-887P-201ENST00000410660 100 ntBASIC3.19□□□□□ -1.9
NUCKS1Q9H1E3 RNU4-69P-201ENST00000410677 143 ntBASIC3.19□□□□□ -1.9
NUCKS1Q9H1E3 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC3.19□□□□□ -1.9
NUCKS1Q9H1E3 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC3.19□□□□□ -1.9
NUCKS1Q9H1E3 RPL23AP63-201ENST00000498752 471 ntBASIC3.19□□□□□ -1.9
NUCKS1Q9H1E3 Y_RNA.241-201ENST00000364470 117 ntBASIC3.18□□□□□ -1.9
NUCKS1Q9H1E3 Y_RNA.299-201ENST00000364973 94 ntBASIC3.18□□□□□ -1.9
NUCKS1Q9H1E3 RNU6-1201P-201ENST00000384227 107 ntBASIC3.18□□□□□ -1.9
NUCKS1Q9H1E3 RNU6-24P-201ENST00000384440 107 ntBASIC3.18□□□□□ -1.9
NUCKS1Q9H1E3 Y_RNA.620-201ENST00000411009 88 ntBASIC3.18□□□□□ -1.9
NUCKS1Q9H1E3 RPS29P6-201ENST00000438196 145 ntBASIC3.18□□□□□ -1.9
NUCKS1Q9H1E3 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC3.18□□□□□ -1.9
NUCKS1Q9H1E3 RNU7-96P-201ENST00000459535 64 ntBASIC3.18□□□□□ -1.9
NUCKS1Q9H1E3 Y_RNA.659-201ENST00000515994 113 ntBASIC3.18□□□□□ -1.9
NUCKS1Q9H1E3 RNU6-667P-201ENST00000517186 102 ntBASIC3.18□□□□□ -1.9
NUCKS1Q9H1E3 AC092881.1-201ENST00000638218 2733 ntBASIC3.18□□□□□ -1.9
NUCKS1Q9H1E3 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
NUCKS1Q9H1E3 SNORA9.2-201ENST00000365361 133 ntBASIC3.17□□□□□ -1.9
NUCKS1Q9H1E3 Y_RNA.494-201ENST00000384432 111 ntBASIC3.17□□□□□ -1.9
NUCKS1Q9H1E3 RNU2-63P-201ENST00000410792 194 ntBASIC3.17□□□□□ -1.9
NUCKS1Q9H1E3 SRIP3-201ENST00000413200 219 ntBASIC3.17□□□□□ -1.9
NUCKS1Q9H1E3 RN7SL636P-201ENST00000497504 294 ntBASIC3.17□□□□□ -1.9
NUCKS1Q9H1E3 AC019288.1-201ENST00000557918 224 ntBASIC3.17□□□□□ -1.9
NUCKS1Q9H1E3 MIR4668-201ENST00000582284 70 ntBASIC3.17□□□□□ -1.9
NUCKS1Q9H1E3 RPL12P50-201ENST00000603116 116 ntBASIC3.17□□□□□ -1.9
NUCKS1Q9H1E3 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC3.17□□□□□ -1.9
NUCKS1Q9H1E3 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC3.17□□□□□ -1.9
NUCKS1Q9H1E3 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC3.17□□□□□ -1.9
NUCKS1Q9H1E3 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
NUCKS1Q9H1E3 Y_RNA.171-201ENST00000363760 102 ntBASIC3.16□□□□□ -1.9
NUCKS1Q9H1E3 RNU6-616P-201ENST00000384353 107 ntBASIC3.16□□□□□ -1.9
NUCKS1Q9H1E3 SNORD38C-201ENST00000384381 69 ntBASIC3.16□□□□□ -1.9
NUCKS1Q9H1E3 Z92545.1-201ENST00000411782 234 ntBASIC3.16□□□□□ -1.9
NUCKS1Q9H1E3 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC3.16□□□□□ -1.9
NUCKS1Q9H1E3 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC3.16□□□□□ -1.9
NUCKS1Q9H1E3 CST2P1-201ENST00000425770 87 ntBASIC3.16□□□□□ -1.9
NUCKS1Q9H1E3 AL606517.2-201ENST00000442855 241 ntBASIC3.16□□□□□ -1.9
NUCKS1Q9H1E3 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC3.16□□□□□ -1.9
NUCKS1Q9H1E3 RN7SL297P-201ENST00000483161 293 ntBASIC3.16□□□□□ -1.9
NUCKS1Q9H1E3 AC090821.2-201ENST00000523552 176 ntBASIC3.16□□□□□ -1.9
NUCKS1Q9H1E3 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC3.16□□□□□ -1.9
NUCKS1Q9H1E3 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC3.15□□□□□ -1.9
NUCKS1Q9H1E3 SNORA25.6-201ENST00000364121 118 ntBASIC3.15□□□□□ -1.91
NUCKS1Q9H1E3 Y_RNA.426-201ENST00000384068 113 ntBASIC3.15□□□□□ -1.91
NUCKS1Q9H1E3 RNU6-851P-201ENST00000384565 107 ntBASIC3.15□□□□□ -1.91
NUCKS1Q9H1E3 MIR512-1-201ENST00000384913 84 ntBASIC3.15□□□□□ -1.91
NUCKS1Q9H1E3 RNU7-113P-201ENST00000459273 62 ntBASIC3.15□□□□□ -1.91
NUCKS1Q9H1E3 S100A11P2-201ENST00000467589 312 ntBASIC3.15□□□□□ -1.91
NUCKS1Q9H1E3 AC018868.1-201ENST00000491307 315 ntBASIC3.15□□□□□ -1.91
NUCKS1Q9H1E3 AC114811.1-201ENST00000507207 168 ntBASIC3.15□□□□□ -1.91
NUCKS1Q9H1E3 RNU6-1018P-201ENST00000516577 106 ntBASIC3.15□□□□□ -1.91
NUCKS1Q9H1E3 RNU6-1258P-201ENST00000516911 111 ntBASIC3.15□□□□□ -1.91
NUCKS1Q9H1E3 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC3.15□□□□□ -1.91
NUCKS1Q9H1E3 ZNF861P-201ENST00000588126 639 ntBASIC3.15□□□□□ -1.91
NUCKS1Q9H1E3 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC3.15□□□□□ -1.91
NUCKS1Q9H1E3 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC3.15□□□□□ -1.91
NUCKS1Q9H1E3 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC3.15□□□□□ -1.91
NUCKS1Q9H1E3 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC3.14□□□□□ -1.91
NUCKS1Q9H1E3 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC3.14□□□□□ -1.91
NUCKS1Q9H1E3 RNU6-862P-201ENST00000362804 105 ntBASIC3.14□□□□□ -1.91
NUCKS1Q9H1E3 SNORA71.1-201ENST00000364523 117 ntBASIC3.14□□□□□ -1.91
NUCKS1Q9H1E3 RNU2-40P-201ENST00000410833 196 ntBASIC3.14□□□□□ -1.91
NUCKS1Q9H1E3 AC245047.3-201ENST00000429428 127 ntBASIC3.14□□□□□ -1.91
NUCKS1Q9H1E3 RNU7-45P-201ENST00000459460 63 ntBASIC3.14□□□□□ -1.91
NUCKS1Q9H1E3 RNU7-28P-201ENST00000516759 62 ntBASIC3.14□□□□□ -1.91
NUCKS1Q9H1E3 SNORA31.15-201ENST00000516771 132 ntBASIC3.14□□□□□ -1.91
NUCKS1Q9H1E3 AL355297.2-201ENST00000604792 129 ntBASIC3.14□□□□□ -1.91
NUCKS1Q9H1E3 HNRNPDLP4-201ENST00000605144 301 ntBASIC3.14□□□□□ -1.91
NUCKS1Q9H1E3 AC096644.4-201ENST00000563417 2912 ntBASIC3.14□□□□□ -1.91
NUCKS1Q9H1E3 SNORD115-34-201ENST00000362441 82 ntBASIC3.13□□□□□ -1.91
NUCKS1Q9H1E3 SNORD115-12-201ENST00000362583 82 ntBASIC3.13□□□□□ -1.91
NUCKS1Q9H1E3 SNORD115-29-201ENST00000362834 82 ntBASIC3.13□□□□□ -1.91
NUCKS1Q9H1E3 SNORD115-9-201ENST00000362912 82 ntBASIC3.13□□□□□ -1.91
NUCKS1Q9H1E3 SNORD115-21-201ENST00000362963 81 ntBASIC3.13□□□□□ -1.91
NUCKS1Q9H1E3 SNORD115-14-201ENST00000363090 81 ntBASIC3.13□□□□□ -1.91
NUCKS1Q9H1E3 SNORD115-41-201ENST00000363608 82 ntBASIC3.13□□□□□ -1.91
NUCKS1Q9H1E3 SNORD115-11-201ENST00000363616 82 ntBASIC3.13□□□□□ -1.91
NUCKS1Q9H1E3 SNORD115-5-201ENST00000363633 82 ntBASIC3.13□□□□□ -1.91
NUCKS1Q9H1E3 SNORD115-39-201ENST00000363694 82 ntBASIC3.13□□□□□ -1.91
NUCKS1Q9H1E3 SNORD115-4-201ENST00000363810 82 ntBASIC3.13□□□□□ -1.91
NUCKS1Q9H1E3 SNORD115-6-201ENST00000363942 82 ntBASIC3.13□□□□□ -1.91
NUCKS1Q9H1E3 SNORD115-42-201ENST00000364273 82 ntBASIC3.13□□□□□ -1.91
NUCKS1Q9H1E3 SNORD115-15-201ENST00000364809 81 ntBASIC3.13□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 180.6 ms