Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 MIR6078-201ENST00000611069 100 ntBASIC1.27□□□□□ -2.21
PDLIM3Q53GG5 AL078604.3-201ENST00000615580 211 ntBASIC1.27□□□□□ -2.21
PDLIM3Q53GG5 MIR6788-201ENST00000618842 66 ntBASIC1.27□□□□□ -2.21
PDLIM3Q53GG5 UBE2WP1-201ENST00000362030 340 ntBASIC1.26□□□□□ -2.21
PDLIM3Q53GG5 Y_RNA.65-201ENST00000362846 100 ntBASIC1.26□□□□□ -2.21
PDLIM3Q53GG5 RNU6-969P-201ENST00000383900 105 ntBASIC1.26□□□□□ -2.21
PDLIM3Q53GG5 RNY1P4-201ENST00000384595 115 ntBASIC1.26□□□□□ -2.21
PDLIM3Q53GG5 MIR520E-201ENST00000384867 87 ntBASIC1.26□□□□□ -2.21
PDLIM3Q53GG5 MIR320A-201ENST00000385302 82 ntBASIC1.26□□□□□ -2.21
PDLIM3Q53GG5 AC023051.1-201ENST00000414098 876 ntTSL 5 BASIC1.26□□□□□ -2.21
PDLIM3Q53GG5 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC1.26□□□□□ -2.21
PDLIM3Q53GG5 RNU6-1132P-201ENST00000459214 107 ntBASIC1.26□□□□□ -2.21
PDLIM3Q53GG5 RPL30P7-201ENST00000479312 323 ntBASIC1.26□□□□□ -2.21
PDLIM3Q53GG5 NDUFA4P2-201ENST00000489989 244 ntBASIC1.26□□□□□ -2.21
PDLIM3Q53GG5 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.26□□□□□ -2.21
PDLIM3Q53GG5 MIR4643-201ENST00000577473 78 ntBASIC1.26□□□□□ -2.21
PDLIM3Q53GG5 MIR2681-201ENST00000581814 105 ntBASIC1.26□□□□□ -2.21
PDLIM3Q53GG5 AL162730.1-201ENST00000605734 292 ntBASIC1.26□□□□□ -2.21
PDLIM3Q53GG5 AL353770.2-201ENST00000620024 78 ntBASIC1.26□□□□□ -2.21
PDLIM3Q53GG5 FAS-AS1.2-201ENST00000620386 170 ntBASIC1.26□□□□□ -2.21
PDLIM3Q53GG5 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC1.26□□□□□ -2.21
PDLIM3Q53GG5 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.25□□□□□ -2.21
PDLIM3Q53GG5 MIR335-201ENST00000362173 94 ntBASIC1.25□□□□□ -2.21
PDLIM3Q53GG5 RNU6-833P-201ENST00000363486 107 ntBASIC1.25□□□□□ -2.21
PDLIM3Q53GG5 U8.5-201ENST00000364528 136 ntBASIC1.25□□□□□ -2.21
PDLIM3Q53GG5 RNU1-93P-201ENST00000364704 169 ntBASIC1.25□□□□□ -2.21
PDLIM3Q53GG5 RNU6-144P-201ENST00000383951 107 ntBASIC1.25□□□□□ -2.21
PDLIM3Q53GG5 MIR150-201ENST00000385048 84 ntBASIC1.25□□□□□ -2.21
PDLIM3Q53GG5 SNORD72-201ENST00000390994 80 ntBASIC1.25□□□□□ -2.21
PDLIM3Q53GG5 SNORA67.6-201ENST00000391093 99 ntBASIC1.25□□□□□ -2.21
PDLIM3Q53GG5 AL451046.2-201ENST00000403074 277 ntBASIC1.25□□□□□ -2.21
PDLIM3Q53GG5 AC023449.1-201ENST00000454464 154 ntBASIC1.25□□□□□ -2.21
PDLIM3Q53GG5 RPL39P38-201ENST00000467018 153 ntBASIC1.25□□□□□ -2.21
PDLIM3Q53GG5 Y_RNA.681-201ENST00000516445 113 ntBASIC1.25□□□□□ -2.21
PDLIM3Q53GG5 CYP3A52P-201ENST00000563326 91 ntBASIC1.25□□□□□ -2.21
PDLIM3Q53GG5 MIR4762-201ENST00000585261 75 ntBASIC1.25□□□□□ -2.21
PDLIM3Q53GG5 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC1.25□□□□□ -2.21
PDLIM3Q53GG5 RNU6-674P-201ENST00000363831 107 ntBASIC1.24□□□□□ -2.21
PDLIM3Q53GG5 Y_RNA.416-201ENST00000384014 113 ntBASIC1.24□□□□□ -2.21
PDLIM3Q53GG5 RNU6-322P-201ENST00000516010 103 ntBASIC1.24□□□□□ -2.21
PDLIM3Q53GG5 RN7SKP88-201ENST00000516847 250 ntBASIC1.24□□□□□ -2.21
PDLIM3Q53GG5 7SK.8-201ENST00000612110 250 ntBASIC1.24□□□□□ -2.21
PDLIM3Q53GG5 Y_RNA.802-201ENST00000614892 130 ntBASIC1.24□□□□□ -2.21
PDLIM3Q53GG5 7SK.11-201ENST00000615477 250 ntBASIC1.24□□□□□ -2.21
PDLIM3Q53GG5 U4.1-201ENST00000620349 87 ntBASIC1.24□□□□□ -2.21
PDLIM3Q53GG5 7SK.13-201ENST00000622040 250 ntBASIC1.24□□□□□ -2.21
PDLIM3Q53GG5 AC027279.3-201ENST00000625055 122 ntBASIC1.24□□□□□ -2.21
PDLIM3Q53GG5 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC1.24□□□□□ -2.21
PDLIM3Q53GG5 SNORA25.8-201ENST00000364831 128 ntBASIC1.23□□□□□ -2.21
PDLIM3Q53GG5 Y_RNA.587-201ENST00000391210 103 ntBASIC1.23□□□□□ -2.21
PDLIM3Q53GG5 MIR1304-201ENST00000408243 91 ntBASIC1.23□□□□□ -2.21
PDLIM3Q53GG5 AC245047.8-201ENST00000456455 284 ntBASIC1.23□□□□□ -2.21
PDLIM3Q53GG5 SNORD11-201ENST00000459124 84 ntBASIC1.23□□□□□ -2.21
PDLIM3Q53GG5 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC1.23□□□□□ -2.21
PDLIM3Q53GG5 SNORD116-28-201ENST00000516123 91 ntBASIC1.23□□□□□ -2.21
PDLIM3Q53GG5 SNORA18.7-201ENST00000516910 131 ntBASIC1.23□□□□□ -2.21
PDLIM3Q53GG5 AL512310.8-201ENST00000550183 120 ntBASIC1.23□□□□□ -2.21
PDLIM3Q53GG5 MIR3128-201ENST00000581957 66 ntBASIC1.23□□□□□ -2.21
PDLIM3Q53GG5 MIR3149-201ENST00000584629 83 ntBASIC1.23□□□□□ -2.21
PDLIM3Q53GG5 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC1.23□□□□□ -2.21
PDLIM3Q53GG5 Y_RNA.144-201ENST00000363521 113 ntBASIC1.22□□□□□ -2.21
PDLIM3Q53GG5 RNU6-702P-201ENST00000364982 107 ntBASIC1.22□□□□□ -2.21
PDLIM3Q53GG5 Y_RNA.352-201ENST00000365439 102 ntBASIC1.22□□□□□ -2.21
PDLIM3Q53GG5 SNORA2.2-201ENST00000365473 135 ntBASIC1.22□□□□□ -2.21
PDLIM3Q53GG5 RNU6-939P-201ENST00000384634 107 ntBASIC1.22□□□□□ -2.21
PDLIM3Q53GG5 Y_RNA.556-201ENST00000384677 113 ntBASIC1.22□□□□□ -2.21
PDLIM3Q53GG5 SNORA8.3-201ENST00000384679 139 ntBASIC1.22□□□□□ -2.21
PDLIM3Q53GG5 MIR452-201ENST00000385020 85 ntBASIC1.22□□□□□ -2.21
PDLIM3Q53GG5 MIR548J-201ENST00000408833 112 ntBASIC1.22□□□□□ -2.21
PDLIM3Q53GG5 AC015922.2-201ENST00000435593 184 ntBASIC1.22□□□□□ -2.21
PDLIM3Q53GG5 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC1.22□□□□□ -2.21
PDLIM3Q53GG5 RNY3P16-201ENST00000516338 101 ntBASIC1.22□□□□□ -2.21
PDLIM3Q53GG5 AC090142.3-201ENST00000519012 385 ntBASIC1.22□□□□□ -2.21
PDLIM3Q53GG5 AC090049.2-201ENST00000550377 109 ntBASIC1.22□□□□□ -2.21
PDLIM3Q53GG5 AC019288.1-201ENST00000557918 224 ntBASIC1.22□□□□□ -2.21
PDLIM3Q53GG5 AC062037.2-201ENST00000610137 73 ntBASIC1.22□□□□□ -2.21
PDLIM3Q53GG5 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC1.22□□□□□ -2.21
PDLIM3Q53GG5 7SK.10-201ENST00000621414 298 ntBASIC1.22□□□□□ -2.21
PDLIM3Q53GG5 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.21□□□□□ -2.22
PDLIM3Q53GG5 Y_RNA.76-201ENST00000362931 109 ntBASIC1.21□□□□□ -2.22
PDLIM3Q53GG5 RNU6-442P-201ENST00000383968 104 ntBASIC1.21□□□□□ -2.22
PDLIM3Q53GG5 MIR517C-201ENST00000385103 95 ntBASIC1.21□□□□□ -2.22
PDLIM3Q53GG5 MIR136-201ENST00000385207 82 ntBASIC1.21□□□□□ -2.22
PDLIM3Q53GG5 SNORD41-201ENST00000386967 70 ntBASIC1.21□□□□□ -2.22
PDLIM3Q53GG5 MT-TT-201ENST00000387460 66 ntBASIC1.21□□□□□ -2.22
PDLIM3Q53GG5 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.21□□□□□ -2.22
PDLIM3Q53GG5 Y_RNA.680-201ENST00000516441 93 ntBASIC1.21□□□□□ -2.22
PDLIM3Q53GG5 RNA5SP395-201ENST00000516567 118 ntBASIC1.21□□□□□ -2.22
PDLIM3Q53GG5 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC1.21□□□□□ -2.22
PDLIM3Q53GG5 MIR3664-201ENST00000579074 99 ntBASIC1.21□□□□□ -2.22
PDLIM3Q53GG5 AC015726.2-201ENST00000620112 122 ntBASIC1.21□□□□□ -2.22
PDLIM3Q53GG5 AL365265.1-201ENST00000621045 234 ntBASIC1.21□□□□□ -2.22
PDLIM3Q53GG5 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.21□□□□□ -2.22
PDLIM3Q53GG5 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC1.2□□□□□ -2.22
PDLIM3Q53GG5 Y_RNA.60-201ENST00000362831 98 ntBASIC1.2□□□□□ -2.22
PDLIM3Q53GG5 RNA5SP457-201ENST00000363657 124 ntBASIC1.2□□□□□ -2.22
PDLIM3Q53GG5 Y_RNA.193-201ENST00000363979 102 ntBASIC1.2□□□□□ -2.22
PDLIM3Q53GG5 Y_RNA.307-201ENST00000365022 117 ntBASIC1.2□□□□□ -2.22
PDLIM3Q53GG5 MIR216A-201ENST00000385063 110 ntBASIC1.2□□□□□ -2.22
PDLIM3Q53GG5 MIR548H3-201ENST00000408771 118 ntBASIC1.2□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 179.4 ms