Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC3.61□□□□□ -1.83
COL9A1P20849 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC3.61□□□□□ -1.83
COL9A1P20849 SNORA40.18-201ENST00000391200 128 ntBASIC3.61□□□□□ -1.83
COL9A1P20849 RNU6-380P-201ENST00000410207 107 ntBASIC3.61□□□□□ -1.83
COL9A1P20849 AC245047.7-201ENST00000440265 293 ntBASIC3.61□□□□□ -1.83
COL9A1P20849 RNU7-12P-201ENST00000516030 62 ntBASIC3.61□□□□□ -1.83
COL9A1P20849 SNORA25.13-201ENST00000516395 103 ntBASIC3.61□□□□□ -1.83
COL9A1P20849 SNORA31.10-201ENST00000516482 106 ntBASIC3.61□□□□□ -1.83
COL9A1P20849 DEFB122-202ENST00000569013 197 ntBASIC3.61□□□□□ -1.83
COL9A1P20849 ADGRL2-211ENST00000370730 6173 ntTSL 5 BASIC3.61□□□□□ -1.83
COL9A1P20849 PCDH11X-206ENST00000373097 9146 ntAPPRIS ALT2 TSL 1 (best) BASIC3.61□□□□□ -1.83
COL9A1P20849 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
COL9A1P20849 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC3.6□□□□□ -1.83
COL9A1P20849 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
COL9A1P20849 MTUS1-216ENST00000519263 4089 ntTSL 2 BASIC3.6□□□□□ -1.83
COL9A1P20849 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
COL9A1P20849 RNU6-23P-201ENST00000363283 107 ntBASIC3.6□□□□□ -1.83
COL9A1P20849 SNORD114-10-201ENST00000363409 72 ntBASIC3.6□□□□□ -1.83
COL9A1P20849 RNU6-1019P-201ENST00000364424 107 ntBASIC3.6□□□□□ -1.83
COL9A1P20849 MIR181B2-201ENST00000385004 89 ntBASIC3.6□□□□□ -1.83
COL9A1P20849 MIR516B2-201ENST00000385190 85 ntBASIC3.6□□□□□ -1.83
COL9A1P20849 Z98742.3-201ENST00000418637 326 ntBASIC3.6□□□□□ -1.83
COL9A1P20849 RNU6-523P-201ENST00000516304 54 ntBASIC3.6□□□□□ -1.83
COL9A1P20849 RNA5SP168-201ENST00000516642 112 ntBASIC3.6□□□□□ -1.83
COL9A1P20849 AC012676.2-201ENST00000619258 186 ntBASIC3.6□□□□□ -1.83
COL9A1P20849 CYSLTR2-201ENST00000282018 4672 ntAPPRIS P1 BASIC3.6□□□□□ -1.83
COL9A1P20849 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC3.6□□□□□ -1.83
COL9A1P20849 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC3.6□□□□□ -1.83
COL9A1P20849 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
COL9A1P20849 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
COL9A1P20849 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
COL9A1P20849 ANKRD36C-202ENST00000456556 5428 ntAPPRIS P1 TSL 5 BASIC3.59□□□□□ -1.83
COL9A1P20849 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC3.59□□□□□ -1.83
COL9A1P20849 MIR448-201ENST00000362131 111 ntBASIC3.59□□□□□ -1.83
COL9A1P20849 Y_RNA.98-201ENST00000363109 102 ntBASIC3.59□□□□□ -1.83
COL9A1P20849 RNA5SP138-201ENST00000365098 114 ntBASIC3.59□□□□□ -1.83
COL9A1P20849 RNU6-342P-201ENST00000384521 104 ntBASIC3.59□□□□□ -1.83
COL9A1P20849 TRAJ42-201ENST00000390495 66 ntAPPRIS P1 BASIC3.59□□□□□ -1.83
COL9A1P20849 RNU4-47P-201ENST00000410876 114 ntBASIC3.59□□□□□ -1.83
COL9A1P20849 U3.44-201ENST00000458938 192 ntBASIC3.59□□□□□ -1.83
COL9A1P20849 SNORA70.19-201ENST00000516717 90 ntBASIC3.59□□□□□ -1.83
COL9A1P20849 MTND5P40-201ENST00000559945 246 ntBASIC3.59□□□□□ -1.83
COL9A1P20849 AC069114.2-201ENST00000604699 304 ntBASIC3.59□□□□□ -1.83
COL9A1P20849 RAD17-206ENST00000358030 2648 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
COL9A1P20849 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
COL9A1P20849 PIGN-229ENST00000638936 4233 ntAPPRIS P1 TSL 5 BASIC3.59□□□□□ -1.84
COL9A1P20849 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC3.59□□□□□ -1.84
COL9A1P20849 GABRG2-213ENST00000639046 3058 ntTSL 5 BASIC3.58□□□□□ -1.84
COL9A1P20849 N4BP2L2-201ENST00000267068 9427 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
COL9A1P20849 ADGRG2-206ENST00000360279 4702 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
COL9A1P20849 RNU6-624P-201ENST00000363411 107 ntBASIC3.58□□□□□ -1.84
COL9A1P20849 Y_RNA.537-201ENST00000384626 109 ntBASIC3.58□□□□□ -1.84
COL9A1P20849 RNU6-602P-201ENST00000411155 105 ntBASIC3.58□□□□□ -1.84
COL9A1P20849 CST9LP2-201ENST00000437612 320 ntBASIC3.58□□□□□ -1.84
COL9A1P20849 SNORD67.1-201ENST00000516618 108 ntBASIC3.58□□□□□ -1.84
COL9A1P20849 FAM106DP-201ENST00000586416 501 ntBASIC3.58□□□□□ -1.84
COL9A1P20849 AC005786.1-201ENST00000588553 154 ntBASIC3.58□□□□□ -1.84
COL9A1P20849 Y_RNA.57-201ENST00000362806 113 ntBASIC3.57□□□□□ -1.84
COL9A1P20849 RNU6-478P-201ENST00000363904 110 ntBASIC3.57□□□□□ -1.84
COL9A1P20849 snoU13.16-201ENST00000459350 104 ntBASIC3.57□□□□□ -1.84
COL9A1P20849 RNU6-557P-201ENST00000516842 110 ntBASIC3.57□□□□□ -1.84
COL9A1P20849 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC3.57□□□□□ -1.84
COL9A1P20849 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
COL9A1P20849 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
COL9A1P20849 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC3.57□□□□□ -1.84
COL9A1P20849 FKTN-201ENST00000223528 7364 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
COL9A1P20849 MEI4-201ENST00000602452 4800 ntAPPRIS P1 TSL 5 BASIC3.56□□□□□ -1.84
COL9A1P20849 CD24P4-201ENST00000382840 243 ntBASIC3.56□□□□□ -1.84
COL9A1P20849 RNU6-1321P-201ENST00000390905 107 ntBASIC3.56□□□□□ -1.84
COL9A1P20849 RNU6-1086P-201ENST00000410930 100 ntBASIC3.56□□□□□ -1.84
COL9A1P20849 RNA5SP184-201ENST00000411071 108 ntBASIC3.56□□□□□ -1.84
COL9A1P20849 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC3.56□□□□□ -1.84
COL9A1P20849 RNU7-48P-201ENST00000458875 63 ntBASIC3.56□□□□□ -1.84
COL9A1P20849 AC125388.1-201ENST00000459631 156 ntBASIC3.56□□□□□ -1.84
COL9A1P20849 AC025445.1-201ENST00000502728 300 ntBASIC3.56□□□□□ -1.84
COL9A1P20849 MIR4319-201ENST00000577285 85 ntBASIC3.56□□□□□ -1.84
COL9A1P20849 AC046143.2-201ENST00000609789 160 ntBASIC3.56□□□□□ -1.84
COL9A1P20849 PWAR6-201ENST00000552334 4618 ntBASIC3.56□□□□□ -1.84
COL9A1P20849 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC3.56□□□□□ -1.84
COL9A1P20849 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
COL9A1P20849 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
COL9A1P20849 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
COL9A1P20849 RNU6-220P-201ENST00000390919 107 ntBASIC3.55□□□□□ -1.84
COL9A1P20849 RNU7-79P-201ENST00000516082 62 ntBASIC3.55□□□□□ -1.84
COL9A1P20849 RNU6-871P-201ENST00000516122 100 ntBASIC3.55□□□□□ -1.84
COL9A1P20849 IGKV2-26-201ENST00000518305 343 ntBASIC3.55□□□□□ -1.84
COL9A1P20849 MIR548AR-201ENST00000582191 57 ntBASIC3.55□□□□□ -1.84
COL9A1P20849 MIR8055-201ENST00000610739 97 ntBASIC3.55□□□□□ -1.84
COL9A1P20849 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC3.55□□□□□ -1.84
COL9A1P20849 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
COL9A1P20849 OTUD6B-AS1-201ENST00000522817 4275 ntTSL 2 BASIC3.55□□□□□ -1.84
COL9A1P20849 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC3.55□□□□□ -1.84
COL9A1P20849 KLRD1-204ENST00000381908 15549 ntAPPRIS P4 TSL 1 (best) BASIC3.54□□□□□ -1.84
COL9A1P20849 SNORD123-201ENST00000459473 70 ntBASIC3.54□□□□□ -1.84
COL9A1P20849 AC006483.1-201ENST00000487308 313 ntBASIC3.54□□□□□ -1.84
COL9A1P20849 AC008413.1-201ENST00000511864 177 ntBASIC3.54□□□□□ -1.84
COL9A1P20849 RNU7-153P-201ENST00000516455 62 ntBASIC3.54□□□□□ -1.84
COL9A1P20849 RNU7-137P-201ENST00000516788 62 ntBASIC3.54□□□□□ -1.84
COL9A1P20849 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC3.54□□□□□ -1.84
COL9A1P20849 MIR3616-201ENST00000584070 92 ntBASIC3.54□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 187.7 ms